Taxonomic group: bacteria / Firmicutes
(Phylum: Firmicutes)
Associated disease: infection due to Enterococcus faecalis [ICD11:
XN2H4 
]
The structure was elucidated in this paperNCBI PubMed ID: 32345640Publication DOI: 10.1128/mBio.00277-20Journal NLM ID: 101519231Publisher: Washington, DC: American Society for Microbiology
Correspondence: Yann.Guerardel

univ-lille.fr; pascale.serror

inrae.fr
Institutions: Univ. Lille, CNRS, UMR 8576-UGSF-Unité de Glycobiologie Structurale et Fonctionnelle, Lille, France, Univ. Littoral Côte d'Opale, UMR 1158 BioEcoAgro, TERRA Viollette, USC Anses, INRAe, Univ. Lille, Univ. Artois, Univ. Picardie Jules Verne, Univ. Liège, Yncréa, Boulogne-sur-Mer, France, University of Sheffield, Department of Molecular Biology and Biotechnology, Sheffield, United Kingdom, Université Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, Jouy-en-Josas, France
All enterococci produce a complex polysaccharide called the enterococcal polysaccharide antigen (EPA). This polymer is required for normal cell growth and division and for resistance to cephalosporins and plays a critical role in host-pathogen interaction. The EPA contributes to host colonization and is essential for virulence, conferring resistance to phagocytosis during the infection. Recent studies revealed that the "decorations" of the EPA polymer, encoded by genetic loci that are variable between isolates, underpin the biological activity of this surface polysaccharide. In this work, we investigated the structure of the EPA polymer produced by the high-risk enterococcal clonal complex Enterococcus faecalis V583. We analyzed purified EPA from the wild-type strain and a mutant lacking decorations and elucidated the structure of the EPA backbone and decorations. We showed that the rhamnan backbone of EPA is composed of a hexasaccharide repeat unit of C2- and C3-linked rhamnan chains, partially substituted in the C3 position by α-glucose (α-Glc) and in the C2 position by β-N-acetylglucosamine (β-GlcNAc). The so-called "EPA decorations" consist of phosphopolysaccharide chains corresponding to teichoic acids covalently bound to the rhamnan backbone. The elucidation of the complete EPA structure allowed us to propose a biosynthetic pathway, a first essential step toward the design of antimicrobials targeting the synthesis of this virulence factor.IMPORTANCE Enterococci are opportunistic pathogens responsible for hospital- and community-acquired infections. All enterococci produce a surface polysaccharide called EPA (enterococcal polysaccharide antigen) required for biofilm formation, antibiotic resistance, and pathogenesis. Despite the critical role of EPA in cell growth and division and as a major virulence factor, no information is available on its structure. Here, we report the complete structure of the EPA polymer produced by the model strain E. faecalis V583. We describe the structure of the EPA backbone, made of a rhamnan hexasaccharide substituted by Glc and GlcNAc residues, and show that teichoic acids are covalently bound to this rhamnan chain, forming the so-called "EPA decorations" essential for host colonization and pathogenesis. This report represents a key step in efforts to identify the structural properties of EPA that are essential for its biological activity and to identify novel targets to develop preventive and therapeutic approaches against enterococci.
teichoic acids, cell wall polysaccharide, rhamnan, Enterococcus faecalis, E.faecalis, enterococcal polysaccharide antigen
Structure type: polymer chemical repeating unit
Location inside paper: Fig.2, table 1
Trivial name: enterococcal polysaccharide antigen (EPA) rhamnan backbone
Compound class: cell wall polysaccharide
Contained glycoepitopes: IEDB_133754,IEDB_135813,IEDB_136105,IEDB_137340,IEDB_141807,IEDB_142488,IEDB_143253,IEDB_144825,IEDB_144998,IEDB_146664,IEDB_151531,IEDB_158539,IEDB_225177,IEDB_885823,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, methylation, gel filtration, NMR-2D, GC-MS, sugar analysis, 31P NMR, GC, enzymatic degradation, HF treatment, HR-MAS NMR, bioinformatic analysis (BLASTp), HCl treatment
Comments, role: the rhamnan backbone of E. faecalis VE14089 WT (wild type); rhamnan fraction Q1-HF-G1 was obtained by HCl and HF treatment; NMR temperature was not specified.
Related record ID(s): 3689, 3690, 3691
NCBI Taxonomy refs (TaxIDs): 226185,
1351Reference(s) to other database(s): GTC:G51223OV
Show glycosyltransferases
NMR conditions: in D2O
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
2,2,3,3,2,3 aDGlcp 95.95 74.29 74.08 72.93 70.80 61.72
2,2,3,3,2 aLRhap 102.25 75.35 75.10 71.72 70.65 18.01
2,2,3,3 aLRhap 101.84 79.47 71.48 73.11 70.74 18.04
2,2,3,2,2 Ac
2,2,3,2 bDGlcpN 104.05 57.21 71.70 73.47 76.85 61.66
2,2,3 aLRhap 101.82 79.33 76.80 73.45 70.65 18.10
2,2 aLRhap 103.24 71.13 78.70 72.93 70.61 18.11
2 aLRhap 102.16 79.45 71.27 73.52 70.50 18.00
aLRhap 102.07 79.37 71.37 73.49 70.50 18.00
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
2,2,3,3,2,3 aDGlcp 5.095 3.608 3.772 3.919 3.463 3.748-3.782
2,2,3,3,2 aLRhap 5.173 4.347 3.953 3.621 3.738 1.280
2,2,3,3 aLRhap 5.235 4.011 3.861 3.545 3.734 1.333
2,2,3,2,2 Ac
2,2,3,2 bDGlcpN 4.582 3.702 3.628 3.468 3.425 3.766-3.872
2,2,3 aLRhap 5.171 4.210 3.904 3.484 3.728 1.282
2,2 aLRhap 4.966 4.159 3.843 3.558 3.779 1.282
2 aLRhap 5.109 4.106 3.901 3.471 3.740-3.780 1.280
aLRhap 5.159 4.067 3.944 3.513 3.740-3.780 1.280
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
2,2,3,3,2,3 aDGlcp 95.95/5.095 74.29/3.608 74.08/3.772 72.93/3.919 70.80/3.463 61.72/3.748-3.782
2,2,3,3,2 aLRhap 102.25/5.173 75.35/4.347 75.10/3.953 71.72/3.621 70.65/3.738 18.01/1.280
2,2,3,3 aLRhap 101.84/5.235 79.47/4.011 71.48/3.861 73.11/3.545 70.74/3.734 18.04/1.333
2,2,3,2,2 Ac
2,2,3,2 bDGlcpN 104.05/4.582 57.21/3.702 71.70/3.628 73.47/3.468 76.85/3.425 61.66/3.766-3.872
2,2,3 aLRhap 101.82/5.171 79.33/4.210 76.80/3.904 73.45/3.484 70.65/3.728 18.10/1.282
2,2 aLRhap 103.24/4.966 71.13/4.159 78.70/3.843 72.93/3.558 70.61/3.779 18.11/1.282
2 aLRhap 102.16/5.109 79.45/4.106 71.27/3.901 73.52/3.471 70.50/3.740-3.780 18.00/1.280
aLRhap 102.07/5.159 79.37/4.067 71.37/3.944 73.49/3.513 70.50/3.740-3.780 18.00/1.280
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| 2,2,3,3,2,3 | aDGlcp | 5.095 | 3.608 | 3.772 | 3.919 | 3.463 | 3.748 3.782 |
| 2,2,3,3,2 | aLRhap | 5.173 | 4.347 | 3.953 | 3.621 | 3.738 | 1.280 |
| 2,2,3,3 | aLRhap | 5.235 | 4.011 | 3.861 | 3.545 | 3.734 | 1.333 |
| 2,2,3,2,2 | Ac | |
| 2,2,3,2 | bDGlcpN | 4.582 | 3.702 | 3.628 | 3.468 | 3.425 | 3.766 3.872 |
| 2,2,3 | aLRhap | 5.171 | 4.210 | 3.904 | 3.484 | 3.728 | 1.282 |
| 2,2 | aLRhap | 4.966 | 4.159 | 3.843 | 3.558 | 3.779 | 1.282 |
| 2 | aLRhap | 5.109 | 4.106 | 3.901 | 3.471 | 3.740 3.780 | 1.280 |
| | aLRhap | 5.159 | 4.067 | 3.944 | 3.513 | 3.740 3.780 | 1.280 |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 2,2,3,3,2,3 | aDGlcp | 95.95 | 74.29 | 74.08 | 72.93 | 70.80 | 61.72 |
| 2,2,3,3,2 | aLRhap | 102.25 | 75.35 | 75.10 | 71.72 | 70.65 | 18.01 |
| 2,2,3,3 | aLRhap | 101.84 | 79.47 | 71.48 | 73.11 | 70.74 | 18.04 |
| 2,2,3,2,2 | Ac | |
| 2,2,3,2 | bDGlcpN | 104.05 | 57.21 | 71.70 | 73.47 | 76.85 | 61.66 |
| 2,2,3 | aLRhap | 101.82 | 79.33 | 76.80 | 73.45 | 70.65 | 18.10 |
| 2,2 | aLRhap | 103.24 | 71.13 | 78.70 | 72.93 | 70.61 | 18.11 |
| 2 | aLRhap | 102.16 | 79.45 | 71.27 | 73.52 | 70.50 | 18.00 |
| | aLRhap | 102.07 | 79.37 | 71.37 | 73.49 | 70.50 | 18.00 |
|
There is only one chemically distinct structure: