Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Associated disease: pneumonia [ICD11:
CA40 
];
nosocomial infections [ICD11:
XB25 
];
urinary tract infections (UTI) [ICD11:
GC08 
];
septicemia [ICD11:
MA15.Y 
];
infection due to Klebsiella pneumoniae [ICD11:
XN741 
]
The structure was elucidated in this paperNCBI PubMed ID: 33113762Publication DOI: 10.3390/antibiotics9110732Journal NLM ID: 101637404Publisher: Basel, Switzerland: MDPI AG
Correspondence: nikvol

obolensk.org
Institutions: N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia, State Research Center for Applied Microbiology and Biotechnology, 142279 Obolensk, Moscow Region, Russia
Bacteriophages and phage enzymes are considered as possible alternatives to antibiotics in the treatment of infections caused by antibiotic-resistant bacteria. Due to the ability to cleave the capsular polysaccharides (CPS), one of the main virulence factors of Klebsiella pneumoniae, phage depolymerases, has potential in the treatment of K. pneumoniae infections. Here, we characterized in vivo two novel phage-encoded polysaccharide depolymerases as therapeutics against clinical isolates of K. pneumoniae. The depolymerases Dep_kpv79 and Dep_kpv767 encoded by Klebsiella phages KpV79 (Myoviridae; Jedunavirus) and KpV767 (Autographiviridae, Studiervirinae, Przondovirus), respectively, were identified as specific beta-galactosidases that cleave the K. pneumoniae K57 type CPS by the hydrolytic mechanism. They were found to be highly effective at combating sepsis and hip infection caused by K. pneumoniae in lethal mouse models. Here, 80-100% of animals were protected against death by a single dose (e.g., 50 ?g/mouse) of the enzyme injected 0.5 h after infection by K. pneumoniae strains of the K57 capsular type. The therapeutic effect of the depolymerases is because they strip the capsule and expose the underlying bacterium to the immune attack such as complement-mediated killing. These data provide one more confirmation that phage polysaccharide depolymerases represent a promising tool for antimicrobial therapy.
Klebsiella pneumoniae, bacteriophage, antimicrobial therapy, polysaccharide depolymerase
Structure type: polymer chemical repeating unit
Location inside paper: Fig.4, table 3, CPS
Compound class: CPS, K-antigen
Contained glycoepitopes: IEDB_130701,IEDB_136044,IEDB_137472,IEDB_141794,IEDB_144983,IEDB_152206,IEDB_190606,IEDB_983930,SB_165,SB_166,SB_187,SB_195,SB_44,SB_67,SB_7,SB_72,SB_88
Methods: 13C NMR, 1H NMR, NMR-2D, PCR, DNA techniques, GPC, enzymatic depolymerization, function analysis of gene clusters, HR-ESI-MS, phage characterization
Comments, role: published polymerization frame was shifted for conformity with other records.
Related record ID(s): 7638, 7639
NCBI Taxonomy refs (TaxIDs): 573Reference(s) to other database(s): GTC:G37580AG, GlycomeDB:
68
Show glycosyltransferases
NMR conditions: in D2O at 333 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
3,2,4 aDManp 101.5 71.4 71.6 68.0 74.0 62.2
3,2 aDGalpA 102.1 69.5 78.4 79.0 72.2 174.7
3 aDManp 96.2 81.2 71.6 68.4 74.1 62.3
bDGalp 105.7 71 78 65.9 76.3 62.5
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
3,2,4 aDManp 4.99 3.87 3.82 3.69 4.02 3.80-3.89
3,2 aDGalpA 5.21 4.07 4.16 4.63 4.57 -
3 aDManp 5.21 4.05 4.02 3.77 4.01 3.75-3.84
bDGalp 4.66 3.64 3.72 4.01 3.63 3.77-3.83
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
3,2,4 aDManp 101.5/4.99 71.4/3.87 71.6/3.82 68.0/3.69 74.0/4.02 62.2/3.80-3.89
3,2 aDGalpA 102.1/5.21 69.5/4.07 78.4/4.16 79.0/4.63 72.2/4.57
3 aDManp 96.2/5.21 81.2/4.05 71.6/4.02 68.4/3.77 74.1/4.01 62.3/3.75-3.84
bDGalp 105.7/4.66 71/3.64 78/3.72 65.9/4.01 76.3/3.63 62.5/3.77-3.83
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| 3,2,4 | aDManp | 4.99 | 3.87 | 3.82 | 3.69 | 4.02 | 3.80 3.89 |
| 3,2 | aDGalpA | 5.21 | 4.07 | 4.16 | 4.63 | 4.57 |
|
| 3 | aDManp | 5.21 | 4.05 | 4.02 | 3.77 | 4.01 | 3.75 3.84 |
| | bDGalp | 4.66 | 3.64 | 3.72 | 4.01 | 3.63 | 3.77 3.83 |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 3,2,4 | aDManp | 101.5 | 71.4 | 71.6 | 68.0 | 74.0 | 62.2 |
| 3,2 | aDGalpA | 102.1 | 69.5 | 78.4 | 79.0 | 72.2 | 174.7 |
| 3 | aDManp | 96.2 | 81.2 | 71.6 | 68.4 | 74.1 | 62.3 |
| | bDGalp | 105.7 | 71 | 78 | 65.9 | 76.3 | 62.5 |
|
There is only one chemically distinct structure: