Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Associated disease: infection due to Burkholderia pseudomallei [ICD11:
XN3LD 
];
infection due to Pseudomonas pseudomallei [ICD11:
XN8AA 
]
The structure was elucidated in this paperNCBI PubMed ID: 9294419Publication DOI: 10.1128/jb.179.18.5663-5669.1997Journal NLM ID: 2985120RPublisher: American Society for Microbiology
Institutions: Departmentof Microbiology and Infectious Diseases, Heslth Science Centre, Calgary, Canada
Burkholderia (Pseudomonas) pseudomallei is the causative agent of melioidosis, a bacterial infection of considerable morbidity in areas of endemicity of Southeast Asia and northern Australia. Clinical isolates of B. pseudomallei have been demonstrated to produce a lipopolysaccharide (LPS) containing two separate and chemically distinct antigenic O polysaccharides against which infected patients produced antibodies. A putative capsular polysaccharide (CPS) has also been reported and is thought to be antigenically conserved based on results of serological studies with clinical B. pseudomallei isolates. In the present study, the CPS isolated from B. pseudomallei 304b from northeastern Thailand was found to have an [α]D of +99 degrees (water), was composed of D-galactose (D-Gal), 3-deoxy-D-manno-2-octulosonic acid (KDO), and O-acetyl 3:1:1), and was a linear unbranched polymer of repeating tetrasaccharide units having the following structure: -3)-2-O-Ac-β-D-Galp-(1-4)-α-D-Galp-(1-3)-β-D-Galp-(1-5)-β-D-KDOp-(2-. Sera from 13 of 15 patients with different clinical manifestations of melioidosis but not normal controls recognize the CPS, which suggests that it is immunogenic and raises the possibility that it may have a role as a vaccine candidate and/or diagnostic agent.
structure, capsular, characterization, polysaccharide, Burkholderia, Pseudomonas, Kdo, capsular polysaccharide
Structure type: polymer chemical repeating unit
Location inside paper: Table 1
Compound class: CPS, EPS
Contained glycoepitopes: IEDB_115013,IEDB_130645,IEDB_136044,IEDB_136906,IEDB_137472,IEDB_141794,IEDB_149558,IEDB_151528,IEDB_190606,IEDB_918314,SB_165,SB_166,SB_187,SB_195,SB_7,SB_87,SB_88
Methods: NMR, MS
Biological activity: serological data
Comments, role: formerly Pseudomonas pseudomallei, O-deacetylated polysaccharide
Related record ID(s): 3412, 3590, 3859
NCBI Taxonomy refs (TaxIDs): 28450Reference(s) to other database(s): GTC:G98903ZV, GlycomeDB:
26055
Show glycosyltransferases
NMR conditions: in D2O at 319 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6 C7 C8
5,3,4 bDGalp 105.16 70.79 79.04 69.30 75.39 61.41
5,3 aDGalp 96.32 69.80 70.80 79.45 71.05 61.82
5 bDGalp 105.16 70.59 78.40 65.72 75.78 61.67
bXKdop 175.30 104.70 36.74 68.30 76.07 74.28 69.94 64.70
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6 H7 H8
5,3,4 bDGalp 4.62 3.63 3.78 4.12 3.70 ?
5,3 aDGalp 5.15 3.93 4.03 4.27 4.26 3.72-3.83
5 bDGalp 4.69 3.77 3.79 4.16 3.72 ?
bXKdop - - 1.97-2.54 3.87 4.19 3.86 4.07 3.68-3.77
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6 C7/H7 C8/H8
5,3,4 bDGalp 105.16/4.62 70.79/3.63 79.04/3.78 69.30/4.12 75.39/3.70 61.41/?
5,3 aDGalp 96.32/5.15 69.80/3.93 70.80/4.03 79.45/4.27 71.05/4.26 61.82/3.72-3.83
5 bDGalp 105.16/4.69 70.59/3.77 78.40/3.79 65.72/4.16 75.78/3.72 61.67/?
bXKdop 36.74/1.97-2.54 68.30/3.87 76.07/4.19 74.28/3.86 69.94/4.07 64.70/3.68-3.77
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 | H7 | H8 |
| 5,3,4 | bDGalp | 4.62 | 3.63 | 3.78 | 4.12 | 3.70 | ? | |
| 5,3 | aDGalp | 5.15 | 3.93 | 4.03 | 4.27 | 4.26 | 3.72 3.83 | |
| 5 | bDGalp | 4.69 | 3.77 | 3.79 | 4.16 | 3.72 | ? | |
| | bXKdop |
|
| 1.97 2.54 | 3.87 | 4.19 | 3.86 | 4.07 | 3.68 3.77 |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 | C7 | C8 |
| 5,3,4 | bDGalp | 105.16 | 70.79 | 79.04 | 69.30 | 75.39 | 61.41 | |
| 5,3 | aDGalp | 96.32 | 69.80 | 70.80 | 79.45 | 71.05 | 61.82 | |
| 5 | bDGalp | 105.16 | 70.59 | 78.40 | 65.72 | 75.78 | 61.67 | |
| | bXKdop | 175.30 | 104.70 | 36.74 | 68.30 | 76.07 | 74.28 | 69.94 | 64.70 |
|
There is only one chemically distinct structure: