Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Associated disease: infection due to Citrobacter freundii [ICD11:
XN0M3 
];
infection due to Escherichia coli [ICD11:
XN6P4 
]
The structure was elucidated in this paperNCBI PubMed ID: 10799808Journal NLM ID: 9315554Publisher: Elsevier
Correspondence: nishiuchi

med.osaka-cu.ac.jp
Institutions: Department of Bacteriology, Osaka City University Medical School, Osaka 545-8585, Japan, Department of Chemistry, Faculty of Science, Osaka City University, Osaka 558-8585, Japan
Citrobacter freundii OCU158 is a serologically cross-reactive strain with Escherichia coli O157:H7. To explore the close relationship between two strains, we have analyzed the chemical structures of O-specific polysaccharides and antigenic properties of lipopolysaccharides (LPSs) of both strains. The structure of O-specific polysaccharides from both strains was found to be identical by chemical and nuclear magnetic resonance analyses, in which D-PerNAc was 4-acetamido-4,6-dideoxy-D-mannose: [→4)-β-D-Glc-(1→3)-α-D-PerNAc-(1→4)-α-D-GalNAc-(1→3)-α-L-Fuc-(1→](n). The enzyme immunoassay using LPS derived either from E. coli O157 or from C. freundii could equally detect high levels of serum antibodies against LPS in patients with enterohemorrhagic E. coli (EHEC) O157 infection. Absorption of antibodies in EHEC patient serum by LPS from E. coli O157 or C. freundii, however, showed a difference in the epitopes. This difference was attributable to the epitope specificity of the core region and/or lipid A structure in LPS.
Lipopolysaccharide, structure, polysaccharide, property, Escherichia, Escherichia coli, Escherichia coli O157:H7, O-specific, O-specific polysaccharide, serologic, cross-reactivity, crossreactivity, Citrobacter, Citrobacter freundii, epitope specificity
Structure type: polymer chemical repeating unit
Location inside paper: Fig. 4
Compound class: O-polysaccharide
Contained glycoepitopes: IEDB_130648,IEDB_136045,IEDB_137473,IEDB_1391961,IEDB_141584,IEDB_142488,IEDB_142489,IEDB_144562,IEDB_146664,IEDB_152214,IEDB_174333,IEDB_885822,IEDB_983931,SB_192,SB_86
Methods: NMR-2D, NMR, serological methods
Biological activity: serological data
NCBI Taxonomy refs (TaxIDs): 546,
83334Reference(s) to other database(s): GTC:G51578RE, GlycomeDB:
26116
Show glycosyltransferases
NMR conditions: in D2O at 343 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
3,4,3 bDGlcp 103.3 73.0 74.0 77.8 74.7 59.8
3,4,4 Ac ? ?
3,4 aDRhap4N 99.5 66.6 70.8 48.6 68.2 14.7
3,2 Ac ? ?
3 aDGalpN 100.2 52.9 67.8 77.7 ? 60.9
aLFucp 98.9 66.8 71.4 76.8 ? 16.5
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
3,4,3 bDGlcp 4.42 3.16 3.42 3.67 3.38 3.76
3,4,4 Ac
3,4 aDRhap4N 4.95 4.18 3.92 4.12 4.07 1.01
3,2 Ac
3 aDGalpN 5.08 3.77 3.90 3.88 ? 3.59
aLFucp 4.80 3.74 3.69 3.95 3.57 1.03
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
3,4,3 bDGlcp 103.3/4.42 73.0/3.16 74.0/3.42 77.8/3.67 74.7/3.38 59.8/3.76
3,4,4 Ac NMR TSV error 2: unequal length of 13C and 1H datasets
3,4 aDRhap4N 99.5/4.95 66.6/4.18 70.8/3.92 48.6/4.12 68.2/4.07 14.7/1.01
3,2 Ac NMR TSV error 2: unequal length of 13C and 1H datasets
3 aDGalpN 100.2/5.08 52.9/3.77 67.8/3.90 77.7/3.88 ?/? 60.9/3.59
aLFucp 98.9/4.80 66.8/3.74 71.4/3.69 76.8/3.95 ?/3.57 16.5/1.03
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| 3,4,3 | bDGlcp | 4.42 | 3.16 | 3.42 | 3.67 | 3.38 | 3.76 |
| 3,4,4 | Ac | |
| 3,4 | aDRhap4N | 4.95 | 4.18 | 3.92 | 4.12 | 4.07 | 1.01 |
| 3,2 | Ac | |
| 3 | aDGalpN | 5.08 | 3.77 | 3.90 | 3.88 | ? | 3.59 |
| | aLFucp | 4.80 | 3.74 | 3.69 | 3.95 | 3.57 | 1.03 |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 3,4,3 | bDGlcp | 103.3 | 73.0 | 74.0 | 77.8 | 74.7 | 59.8 |
| 3,4,4 | Ac | ? | ? | |
| 3,4 | aDRhap4N | 99.5 | 66.6 | 70.8 | 48.6 | 68.2 | 14.7 |
| 3,2 | Ac | ? | ? | |
| 3 | aDGalpN | 100.2 | 52.9 | 67.8 | 77.7 | ? | 60.9 |
| | aLFucp | 98.9 | 66.8 | 71.4 | 76.8 | ? | 16.5 |
|
 The spectrum also has 6 signals at unknown positions (not plotted). |
There is only one chemically distinct structure: