Taxonomic group: fungi / Ascomycota
(Phylum: Ascomycota)
Host organism: Homo sapiens
Organ / tissue: conidia,
cell wallAssociated disease: chromoblastomycosis [ICD11:
1F24 
]
The structure was elucidated in this paperNCBI PubMed ID: 20833653Publication DOI: 10.1093/glycob/cwq132Journal NLM ID: 9104124Publisher: IRL Press at Oxford University Press
Correspondence: Shibata N <nshibata

tohoku-pharm.ac.jp>
Institutions: Department of Infection and Host Defense, Tohoku Pharmaceutical University, Sendai, Japan
Fonsecaea pedrosoi is the main etiologic agent of chromoblastomycosis, usually occurring in tropical and subtropical areas. The cell wall components of pathogenic microorganisms behave as an antigen and/or ligand of the innate immune response. The cells of F. pedrosoi reacted with the α-galactopyranose-binding lectin (Griffonia simplicifolia lectin 1B4 isolectin, GSL 1B4), as well as the α-mannose-binding lectin, concanavalin A. The cell wall glycoprotein was isolated from conidial cells of F. pedrosoi, and its structure was analyzed by (1)H-nuclear magnetic resonance (NMR) and (13)C-NMR experiments. The N-linked polysaccharide moiety consists of a backbone β-1,6-linked galactofuranose and α-1,6-linked mannose polymers, both of which are substituted with α-1,2-linked glucose side-chains. Furthermore, the glycoprotein contained a large amount of O-linked oligosaccharides, especially a hexaose that constituted approximately 20% of the glycoprotein. Unexpectedly, the hexaose had a highly branched structure which consisted of galactofuranose, galactopyranose, glucose and mannose residues as follows: aDGlcp(1-2)bDGalf(1-6)[aDGalp(1-3),aDGalp(1-2)]aDManp(1-2)?DManp. An anti-F. pedrosoi antibody specifically reacted with the cells of F. pedrosoi, whereas other fungal cells that contain galactofuranose residues did not react. The reactivity of the antibody was strongly inhibited by the branched hexaose, suggesting that the characteristic structure of the O-linked hexaose involves the antigenic specificity of the cells.
oligosaccharide, polysaccharide, NMR spectroscopy, Galactomannan, β-elimination
Structure type: oligomer
Location inside paper: fig. 8 (22%), fig. 6, fig. 7, Table III, FP-06
Aglycon: (->3) L-Thr/L-Ser (protein)
Compound class: glycoprotein, O-glycan, polysaccharide, cell wall glucan
Contained glycoepitopes: IEDB_130701,IEDB_136095,IEDB_136104,IEDB_136906,IEDB_137472,IEDB_141794,IEDB_142488,IEDB_143632,IEDB_144983,IEDB_144998,IEDB_146664,IEDB_151528,IEDB_152206,IEDB_190606,IEDB_983930,IEDB_983931,SB_136,SB_192,SB_196,SB_44,SB_67,SB_7,SB_72
Methods: 13C NMR, 1H NMR, methylation, NMR-2D, GC-MS, ELISA, acid hydrolysis, HPLC, ion-exchange chromatography, extraction, acetolysis, ROESY, TOCSY, methylation analysis, reduction, CC, GS-MS, flow cytometry analysis, DQF-COSY, HMBC, DEPT
Biological activity: After implantation in the host organism the conidia cells differentiate into mycelial forms which produce the sclerotic cells - an etiologic agent of chromoblastomycosis in Homo sapiens.
Comments, role: This O-glycan comprizes 22% of glycan moiety of the glycoprotein.
Related record ID(s): 43541, 43542, 43543, 43544, 43545, 43546, 43547
NCBI Taxonomy refs (TaxIDs): 40355Reference(s) to other database(s): GTC:G50859CR
Show glycosyltransferases
NMR conditions: in H2O at 318 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
2,2 aDGalp 101.77 69.54 70.26 70.26 ? 62.17
2,3 aDGalp 101.77 69.54 70.26 70.26 ? 62.17
2,6,2 aDGlcp 99.08 72.01 73.74 70.26 73.17 61.44
2,6 bDGalf 107.02 87.65 76.15 83.02 71.38 63.77
2 aDManp 101.53 79.50 78.35 67.49 ? 67.49
aDManp 93.46 80.24 70.84 68.00 ? 61.91
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
2,2 aDGalp 5.287 3.850 3.998 4.091 ? ?
2,3 aDGalp 5.225 3.801 3.883 4.029 ? ?
2,6,2 aDGlcp 5.059 3.584 3.715 3.451 3.781 3.878
2,6 bDGalf 5.160 4.133 4.253 4.021 3.853 3.672-3.724
2 aDManp 5.332 4.219 4.034 3.755 ? ?
aDManp 5.366 3.915 3.929 3.780 ? ?
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
2,2 aDGalp 101.77/5.287 69.54/3.850 70.26/3.998 70.26/4.091 ?/? 62.17/?
2,3 aDGalp 101.77/5.225 69.54/3.801 70.26/3.883 70.26/4.029 ?/? 62.17/?
2,6,2 aDGlcp 99.08/5.059 72.01/3.584 73.74/3.715 70.26/3.451 73.17/3.781 61.44/3.878
2,6 bDGalf 107.02/5.160 87.65/4.133 76.15/4.253 83.02/4.021 71.38/3.853 63.77/3.672-3.724
2 aDManp 101.53/5.332 79.50/4.219 78.35/4.034 67.49/3.755 ?/? 67.49/?
aDManp 93.46/5.366 80.24/3.915 70.84/3.929 68.00/3.780 ?/? 61.91/?
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| 2,2 | aDGalp | 5.287 | 3.850 | 3.998 | 4.091 | ? | ? |
| 2,3 | aDGalp | 5.225 | 3.801 | 3.883 | 4.029 | ? | ? |
| 2,6,2 | aDGlcp | 5.059 | 3.584 | 3.715 | 3.451 | 3.781 | 3.878 |
| 2,6 | bDGalf | 5.160 | 4.133 | 4.253 | 4.021 | 3.853 | 3.672 3.724 |
| 2 | aDManp | 5.332 | 4.219 | 4.034 | 3.755 | ? | ? |
| | aDManp | 5.366 | 3.915 | 3.929 | 3.780 | ? | ? |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 2,2 | aDGalp | 101.77 | 69.54 | 70.26 | 70.26 | ? | 62.17 |
| 2,3 | aDGalp | 101.77 | 69.54 | 70.26 | 70.26 | ? | 62.17 |
| 2,6,2 | aDGlcp | 99.08 | 72.01 | 73.74 | 70.26 | 73.17 | 61.44 |
| 2,6 | bDGalf | 107.02 | 87.65 | 76.15 | 83.02 | 71.38 | 63.77 |
| 2 | aDManp | 101.53 | 79.50 | 78.35 | 67.49 | ? | 67.49 |
| | aDManp | 93.46 | 80.24 | 70.84 | 68.00 | ? | 61.91 |
|
 The spectrum also has 4 signals at unknown positions (not plotted). |
There is only one chemically distinct structure: