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Taxonomic group: bacteria / Proteobacteria (Phylum: Proteobacteria)
Associated disease: infection due to Coxiella burnetii [ICD11: XN0QS

]

The structure was elucidated in this paper
NCBI PubMed ID: 8901269
Journal NLM ID: 0043535
Publisher: Elsevier
Institutions: Institute of Virology, Slovak Academy of Sciences, Dubravska cesta 9, 842 46 Bratislava, Slovak Republic

A lipopolysaccharide isolated from Coxiella burnetii strain Nine Mile in avirulent phase II contains in the lipid A proximal region D-mannose, D-glycero-D-manno-heptose, and 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) in the molar ratio 2:2:3. The primary structure 1 of the heptasaccharide was determined by glycose analysis, methylation analysis, ESI-MS, and FABMS. [sequence: see text]

Lipopolysaccharide, LPS, core, phase, strain, structural, D-mannose, Kdo, avirulent, Coxiella burnetii, D-glycero-D-manno-heptose, phase II, structural studies, strain Nine Mile

Structure type: oligomer
Location inside paper: abstract, structure 1, p.183
Aglycon: lipid A
Trivial name: LPS II
Compound class: LPS
Contained glycoepitopes: IEDB_130650,IEDB_130659,IEDB_130701,IEDB_144983,IEDB_150901,IEDB_152206,IEDB_2189046,IEDB_983930,SB_44,SB_67,SB_72

Methods: methylation, FAB-MS, ESI-MS
Comments, role: heptasaccharide from LPS of avirulent phase II

NCBI Taxonomy refs (TaxIDs): 777
Reference(s) to other database(s): GTC:G79603ZC, GlycomeDB:26545
Show glycosyltransferases

There is only one chemically distinct structure:

O=C(O)[C@@]1(O)C[C@@H](O[C@]2(C(=O)O)C[C@@H](O[C@]3(C(=O)O)C[C@@H](O)[C@@H](O)[C@@H]([C@H](O)CO)O3)[C@@H](O)[C@@H]([C@H](O)CO)O2)[C@@H](O[C@H]2O[C@H]([C@H](O)CO)[C@@H](O[C@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]3O)[C@H](O[C@H]3O[C@H]([C@H](O)CO)[C@@H](O)[C@H](O)[C@@H]3O[C@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]3O)[C@@H]2O)[C@@H]([C@H](O)CO)O1

SVG MW SMILES 3D mol Ionize