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1. (Article ID: 5792)
Knirel YA, Shneider MM, Popova AV, Kasimova AA, Senchenkova SN, Shashkov AS, Chizhov AO
Mechanisms of Acinetobacter baumannii Capsular Polysaccharide Cleavage by Phage Depolymerases
Biochemistry (Moscow) 85(5) (2020)
567-574
Aerobic gram-negative bacterium Acinetobacter baumannii has recently become one of the most relevant pathogens associated with hospital-acquired infections worldwide. A. baumannii produces a capsule around the cell, which represents a thick viscous layer of structurally variable capsular polysaccharide (CPS). The capsule protects the bacteria against unfavorable environmental factors and biological systems, including bacteriophages and host immune system. Many A. baumannii phages have structural depolymerases (tailspikes) that specifically recognize and digest bacterial CPS. In this work, we studied the interaction of tailspike proteins of four lytic depolymerase-carrying phages with A. baumannii CPS. Depolymerases of three bacteriophages (Fri1, AS12, and BS46) were identified as specific glycosidases that cleave the CPS of A. baumannii strains 28, 1432, and B05, respectively, by the hydrolytic mechanism. The gp54 depolymerase from bacteriophage AP22 was characterized as a polysaccharide lyase that cleaves the CPS of A. baumannii strain 1053 by β-elimination at hexuronic acid (ManNAcA) residues.
Acinetobacter baumannii, capsular polysaccharide, NMR spectroscopy, bacteriophage, Polysaccharide lyase, Tailspike, depolymerase, glycosidase, hexuronic acid, receptor binding protein
NCBI PubMed ID: 32571186Publication DOI: 10.1134/S0006297920050053Journal NLM ID: 0376536Publisher: Nauka/Interperiodica
Correspondence: yknirel

gmail.com
Institutions: Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia, State Research Center for Applied Microbiology and Biotechnology, Obolensk, Moscow Region, 142279, Russia, Higher Chemical College of the Russian Academy of Sciences, D. I. Mendeleev University of Chemical Technology of Russia, Moscow, Russia, Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia, Institute of Antimicrobial Chemotherapy, Smolensk State Medical University, Smolensk, 214019, Russia, Moscow Institute of Physics and Technology (National Research University), Dolgoprudny, Moscow Region, 141701, Russia
Methods: 13C NMR, 1H NMR, NMR-2D, DNA techniques, GPC, enzymatic digestion, HR-ESI-MS
The publication contains the following compound(s):
- Compound ID: 12026
Structure type: polymer chemical repeating unit
Compound class: CPS
Reference(s) to other database(s): GTC:G52976SY
- Compound ID: 14740
Structure type: oligomer
; 620.1951 [M-H]−
Compound class: CPS
Reference(s) to other database(s): GTC:G28149EE
- Compound ID: 14741
Structure type: oligomer
; 620.1951 [M-H]−
Compound class: CPS
Reference(s) to other database(s): GTC:G27597HT
- Compound ID: 14742
|
a-L-4deryHexp4enNAcA-(1-3)-a-D-FucpNAc-(1-4)-b-D-ManpNAcA-(1-4)-b-D-ManpNAcA-(1-3)-a-D-FucpNAc-(1-4)-a-D-ManpNAcA |
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Structure type: oligomer
Compound class: CPS
Reference(s) to other database(s): GTC:G27828BP
- Compound ID: 12344
|
-3)-a-D-GalpNAc6(25%)Ac-(1-4)-a-D-GalpNAcA-(1-3)-b-D-QuipNAc4NAc-(1- |
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Structure type: polymer chemical repeating unit
Compound class: CPS
Reference(s) to other database(s): GTC:G84186XU
- Compound ID: 14743
|
a-D-GalpNAc-(1-4)-a-D-GalpNAcA-(1-3)-b-D-QuipNAc4NAc-(1-3)-{{{-a-D-GalpNAc-(1-4)-a-D-GalpNAcA-(1-3)-b-D-QuipNAc4NAc-(1-3)-}}}/n=0-4/-a-D-GalpNAc-(1-4)-a-D-GalpNAcA-(1-3)-b-D-QuipNAc4NAc |
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Structure type: oligomer
Compound class: CPS
- Compound ID: 12253
|
a-D-GlcpNAc-(1-3)-+
|
/Variants 0/-a-Legp5Ac-(2-6)-+ |
| |
-4)-b-D-Galp-(1-6)-b-D-Galp-(1-3)-b-D-GalpNAc-(1-
/Variants 0/ is:
S-3HOBut-(1-7)-
OR (exclusively)
Ac-7)- |
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Structure type: polymer chemical repeating unit
Compound class: CPS
- Compound ID: 14745
|
a-D-GlcpNAc-(1-3)-+
|
/Variants 0/-a-Legp5Ac-(2-6)-b-D-Galp-(1-6)-b-D-Galp-(1-3)-a-D-GalpNAc
/Variants 0/ is:
S-3HOBut-(1-7)-
OR (exclusively)
Ac-7)- |
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Structure type: oligomer
Compound class: CPS
- Compound ID: 14746
|
a-D-GlcpNAc-(1-3)-+
|
/Variants 0/-a-Legp5Ac-(2-6)-b-D-Galp-(1-6)-b-D-Galp-(1-3)-b-D-GalpNAc
/Variants 0/ is:
S-3HOBut-(1-7)-
OR (exclusively)
Ac-7)- |
Show graphically |
Structure type: oligomer
Compound class: CPS
- Compound ID: 14747
|
a-D-GlcpNAc-(1-3)-+
|
a-D-GlcpNAc-(1-3)-+ /Variants 0/-a-Legp5Ac-(2-6)-+ |
| | |
/Variants 1/-a-Legp5Ac-(2-6)-b-D-Galp-(1-6)-b-D-Galp-(1-3)-b-D-GalpNAc-(1-4)-b-D-Galp-(1-6)-b-D-Galp-(1-3)-D-GalpNAc
/Variants 0/ is:
S-3HOBut-(1-7)-
OR (exclusively)
Ac-7)-
/Variants 1/ is:
S-3HOBut-(1-7)-
OR (exclusively)
Ac-7)- |
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Structure type: oligomer
Compound class: CPS
- Compound ID: 728
|
a-L-FucpNAc-(1-4)-+
|
-3)-a-D-GalpNAcA-(1-3)-a-L-FucpNAc-(1-3)-b-D-GlcpNAc-(1- |
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Structure type: polymer chemical repeating unit
Compound class: CPS, O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G73635WZ, GlycomeDB:
25208
- Compound ID: 14748
|
a-L-FucpNAc-(1-4)-+
|
a-L-FucpNAc-(1-4)-a-D-GalpNAcA-(1-3)-a-L-FucpNAc-(1-3)-b-D-GlcpNAc-(1-3)-a-D-GalpNAcA-(1-3)-a-L-FucpNAc-(1-3)-a-D-GlcpNAc |
Show graphically |
Structure type: oligomer
; 802.3092 [M-H]2−
Compound class: CPS
Reference(s) to other database(s): GTC:G27114UK
- Compound ID: 14749
|
a-L-FucpNAc-(1-4)-+ a-L-FucpNAc-(1-4)-+
| |
a-L-FucpNAc-(1-4)-a-D-GalpNAcA-(1-3)-a-L-FucpNAc-(1-3)-b-D-GlcpNAc-(1-3)-a-D-GalpNAcA-(1-3)-a-L-FucpNAc-(1-3)-b-D-GlcpNAc-(1-3)-a-D-GalpNAcA-(1-3)-a-L-FucpNAc-(1-3)-D-GlcpNAc |
Show graphically |
Structure type: oligomer
Compound class: CPS
Reference(s) to other database(s): GTC:G40384XW
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