Found 2 publications.
Displayed publications from 1 to 2
Expand all publications
Collapse all publications
Show all as text (SweetDB notation)
Show all graphically (SNFG notation)
1. (Article ID: 6026)
Arbatsky NP, Popova AV, Shneider MM, Shashkov AS, Hall RM, Kenyon JJ, Knirel YA
Structure of the K87 capsular polysaccharide and KL87 gene cluster of Acinetobacter baumannii LUH5547 reveals a heptasaccharide repeating unit
Carbohydrate Research 509 (2021)
108439
K87 capsular polysaccharide (CPS) was isolated from Acinetobacter baumannii isolate LUH5547 that carries the KL87 capsule biosynthesis gene cluster at the chromosomal K locus. Studies by sugar analysis, selective chemical cleavages, and 1D and 2D 1H and 13C NMR spectroscopy showed that the CPS has a branched heptasaccharide repeat (K unit) containing one residue each of d-glucose (d-Glсp), d-glucuronic acid (d-GlсpA), N-acetyl-d-glucosamine (d-GlсpNAc), 6-deoxy-l-talose (l-6dTalp), and three residues of l-rhamnose (l-Rhap). The following structure of the CPS was established: →3)-α-L-Rhap-(1→2)-α-L-Rhap-(1→3)-α-L-6dTalp-(1→3)-β-D-GlcpNAc-(1→2↑1β-D-GlcpA-(4←1)-α-D-Glcp(2←1)-α-L-Rhap The position of a minor O-acetyl group present in the CPS was not determined. Functions of enzymes coded by genes in the KL87 gene cluster were tentatively assigned and found to be consistent with the CPS structure.
biosynthesis, structure, capsular, polysaccharide, group, Acinetobacter, Acinetobacter baumannii, capsular polysaccharide, 6-deoxy-L-talose, K locus, K87
NCBI PubMed ID: 34555685Publication DOI: 10.1016/j.carres.2021.108439Journal NLM ID: 0043535Publisher: Elsevier
Correspondence: johanna.kenyon

qut.edu.au
Institutions: N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia, M. M. Shemyakin & Y. A. Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, Russia, State Research Center for Applied Microbiology and Biotechnology, Obolensk, Moscow Region, Russia, Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region, Russia, School of Life and Environmental Sciences, The University of Sydney, Sydney, Australia, Centre for Immunology and Infection Control, School of Biomedical Sciences, Faculty of Health, Queensland University of Technology. Brisbane, Australia
Methods: 13C NMR, 1H NMR, NMR-2D, partial acid hydrolysis, sugar analysis, GLC, Smith degradation, de-O-acetylation, HPLC, GPC, bioinformatic analysis
The publication contains the following compound(s):
- Compound ID: 15612
|
a-L-Rhap-(1-2)-a-D-Glcp-(1-4)-b-D-GlcpA-(1-2)-+
|
-3)-a-L-Rhap-(1-2)-a-L-Rhap-(1-3)-a-L-6dTalp-(1-3)-b-D-GlcpNAc-(1- |
Show graphically |
Structure type: polymer chemical repeating unit
Compound class: CPS
- Compound ID: 15613
Structure type: oligomer
Compound class: CPS
- Compound ID: 15614
Structure type: oligomer
Compound class: CPS
- Compound ID: 15615
Structure type: oligomer
Compound class: CPS
- Compound ID: 15616
|
a-L-Rhap-(1-4)-+
|
-3)-b-D-GlcpA-(1-2)-a-L-Rhap-(1-2)-a-L-Rhap-(1-3)-a-L-Rhap-(1-2)-a-L-Rhap-(1-3)-b-D-GlcpNAc-(1- |
Show graphically |
Structure type: polymer chemical repeating unit
Compound class: CPS
- Compound ID: 15617
|
a-L-Rhap-(1-3)-a-L-Rhap-(1-4)-+
|
-3)-b-D-GlcpA-(1-2)-a-L-Rhap-(1-2)-a-L-Rhap-(1-3)-a-L-Rhap-(1-2)-a-L-Rhap-(1-3)-b-D-GlcpNAc-(1- |
Show graphically |
Structure type: polymer chemical repeating unit
Compound class: CPS
- Compound ID: 15618
|
a-L-Rhap-(1-3)-a-L-Rhap-(1-4)-b-D-GlcpA-(1-3)-a-L-Rhap-(1-2)-+
|
-3)-a-L-Rhap-(1-3)-a-L-Rhap-(1-2)-a-L-Rhap-(1-3)-b-D-GlcpNAc-(1- |
Show graphically |
Structure type: polymer chemical repeating unit
Compound class: CPS
Expand this publication
Collapse this publication
2. (Article ID: 6084)
Kenyon JJ, Kasimova AA, Sviridova AN, Shpirt AM, Shneider MM, Mikhailova YV, Shelenkov AA, Popova AV, Perepelov AV, Shashkov AS, Dmitrenok AS, Chizhov AO, Knirel YA
Correlation of Acinetobacter baumannii K144 and K86 capsular polysaccharide structures with genes at the K locus reveals the involvement of a novel multifunctional rhamnosyltransferase for structural synthesis
International Journal of Biological Macromolecules (2021)
1294-1300
Whole genome sequence from Acinetobacter baumannii isolate Ab-46-1632 reveals a novel KL144 capsular polysaccharide (CPS) biosynthesis gene cluster, which carries genes for d-glucuronic acid (D-GlcA) and l-rhamnose (l-Rha) synthesis. The CPS was extracted from Ab-46-1632 and studied by 1H and 13C NMR spectroscopy, including a two-dimensional 1H,13C HMBC experiment and Smith degradation. The CPS was found to have a hexasaccharide repeat unit composed of four l-Rhap residues and one residue each of d-GlcpA and N-acetyl-d-glucosamine (D-GlcpNAc) consistent with sugar synthesis genes present in KL144. The K144 CPS structure was established and found to be related to those of A. baumannii K55, K74, K85, and K86. A comparison of the corresponding gene clusters to KL144 revealed a number of shared glycosyltransferase genes correlating to shared glycosidic linkages in the structures. One from the enzymes, encoded by only KL144 and KL86, is proposed to be a novel multifunctional rhamnosyltransfaerase likely responsible for synthesis of a shared α-l-Rhap-(1→2)-α-L-Rhap-(1→3)-L-Rhap trisaccharide fragment in the K144 and K86 structures.
Acinetobacter baumannii, capsular polysaccharide, K locus, K144, K86, multifunctional glycosyltransferase
NCBI PubMed ID: 34757131Publication DOI: 10.1016/j.ijbiomac.2021.10.178Journal NLM ID: 7909578Publisher: Butterworth-Heinemann
Correspondence: asyashpirt

gmail.com
Institutions: Central Scientific Research Institute of Epidemiology, Moscow, Russia, Centre for Immunology and Infection Control, School of Biomedical Sciences, Faculty of Health, Queensland University of Technology. Brisbane, Australia, D.I. Mendeleev University of Chemical Technology of Russia, Moscow, Russia, N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Science, Moscow, Russia, M.M. Shemyakin and Y.A. Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Science, Moscow, Russia, State Research Center for Applied Microbiology and Biotechnology, Obolensk, Moscow, Region, Russia
Methods: 13C NMR, 1H NMR, NMR-2D, sugar analysis, acid hydrolysis, GLC, Smith degradation, GPC, bioinformatic analysis, HR-ESI-MS, sequencing
The publication contains the following compound(s):
- Compound ID: 15616
|
a-L-Rhap-(1-4)-+
|
-3)-b-D-GlcpA-(1-2)-a-L-Rhap-(1-2)-a-L-Rhap-(1-3)-a-L-Rhap-(1-2)-a-L-Rhap-(1-3)-b-D-GlcpNAc-(1- |
Show graphically |
Structure type: polymer chemical repeating unit
Compound class: CPS
- Compound ID: 15617
|
a-L-Rhap-(1-3)-a-L-Rhap-(1-4)-+
|
-3)-b-D-GlcpA-(1-2)-a-L-Rhap-(1-2)-a-L-Rhap-(1-3)-a-L-Rhap-(1-2)-a-L-Rhap-(1-3)-b-D-GlcpNAc-(1- |
Show graphically |
Structure type: polymer chemical repeating unit
Compound class: CPS
- Compound ID: 15618
|
a-L-Rhap-(1-3)-a-L-Rhap-(1-4)-b-D-GlcpA-(1-3)-a-L-Rhap-(1-2)-+
|
-3)-a-L-Rhap-(1-3)-a-L-Rhap-(1-2)-a-L-Rhap-(1-3)-b-D-GlcpNAc-(1- |
Show graphically |
Structure type: polymer chemical repeating unit
Compound class: CPS
- Compound ID: 15751
|
-3)-a-L-Rhap-(1-4)-b-D-GlcpA-(1-3)-a-L-Rhap-(1-2)-a-L-Rhap-(1-3)-a-L-Rhap-(1-3)-b-D-GlcpNAc-(1- |
Show graphically |
Structure type: polymer chemical repeating unit
Compound class: CPS
- Compound ID: 15752
Structure type: oligomer
Compound class: CPS
- Compound ID: 15753
|
a-L-Rhap-(1-3)-b-D-GlcpNAc-(1-3)-a-L-Rhap-(1-3)-D-Sugf
Sug = D-erythronic acid 1,4-lactone = SMILES O=C1[C@H](O){3}[C@H](O)CO1 |
Show graphically |
Structure type: oligomer
Compound class: CPS
- Compound ID: 15602
|
a-L-Rhap-(1-3)-a-L-Rhap-(1-4)-b-D-GlcpA-(1-2)-+
|
-3)-a-L-Rhap-(1-2)-a-L-Rhap-(1-3)-a-L-Rhap-(1-3)-b-D-GlcpNAc-(1- |
Show graphically |
Structure type: polymer chemical repeating unit
Compound class: CPS
Expand this publication
Collapse this publication
Total list of publication IDs on all result pages of the current query:
Total list of corresponding CSDB IDs (permanent record IDs):
Execution: <1 sec