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1. (Article ID: 6411)
Kasimova AA, Sharar NS, Ambrose SJ, Knirel YA, Shneider MM, Timoshina OY, Popova AV, Perepelov AV, Dmitrenok AS, Hsu LY, Hall RM, Kenyon JJ
The Acinetobacter baumannii K70 and K9 capsular polysaccharides consist of related K-units linked by the same Wzy polymerase and cleaved by the same phage depolymerases
Microbiology Spectrum 11(6) (2023)
e0302523
Bacteriophage show promise for the treatment of Acinetobacter baumannii infections that resist all therapeutically suitable antibiotics. Many tail-spike depolymerases encoded by phage that are able to degrade A. baumannii capsular polysaccharide (CPS) exhibit specificity for the linkage present between K-units that make up CPS polymers. This linkage is formed by a specific Wzy polymerase, and the ability to predict this linkage using sequence-based methods that identify the Wzy at the K locus could assist with the selection of phage for therapy. However, little is known about the specificity of Wzy polymerase enzymes. Here, we describe a Wzy polymerase that can accommodate two different but similar sugars as one of the residues it links and phage depolymerases that can cleave both types of bond that Wzy forms.
Acinetobacter baumannii, capsular polysaccharide, Wzy polymerase, phage depolymerase, K70
NCBI PubMed ID: 37975684Publication DOI: 10.1128/spectrum.03025-23Journal NLM ID: 101634614Publisher: Washington, DC: ASM Press
Correspondence: J.J. Kenyon
griffith.edu.au>
Institutions: N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia, State Research Center for Applied Microbiology and Biotechnology, Obolensk, Moscow Region, Russia, M. M. Shemyakin and Y. A. Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, Russia, Centre for Immunology and Infection Control, School of Biomedical Sciences, Faculty of Health, Queensland University of Technology, Brisbane, Australia, School of Life and Environmental Sciences, Faculty of Science, University of Sydney, Sydney, Australia, Saw Swee Hock School of Public Health, National University of Singapore, Queenstown, Singapore, Yong Loo Lin School of Medicine, National University of Singapore, Queenstown, Singapore
Methods: 13C NMR, 1H NMR, NMR-2D, DNA sequencing, sugar analysis, DNA techniques, GLC, Smith degradation, HPLC, GPC, bioinformatic analysis, phage depolymerisation, HR-ESI-MS
The publication contains the following compound(s):
- Compound ID: 10547
|
/Variants 0/-+
|
-4)-a-D-GlcpNAc6(%)Ac-(1-4)-a-D-GalpNAcA-(1-3)-b-D-QuipNAc4N-(1-
/Variants 0/ is:
S-3HOBut-(1-4)-
OR (exclusively)
Ac-4)- |
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Structure type: polymer chemical repeating unit
Compound class: CPS, O-polysaccharide
- Compound ID: 12581
|
a-Acip5Ac7Ac-(2-6)-+
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-4)-a-D-Galp-(1-3)-a-L-FucpNAc-(1-3)-a-D-FucpNAc-(1- |
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Structure type: polymer chemical repeating unit
Trivial name: K13 CPS
Compound class: CPS
Reference(s) to other database(s): GTC:G01535IF
- Compound ID: 2079
|
D-Ala-(2-6)-+
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-4)-a-D-GalpNAcA-(1-4)-a-D-GalpNAcA-(1-3)-b-D-QuipNAc4NAc-(1- |
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Structure type: polymer chemical repeating unit
Compound class: CPS, O-polysaccharide, O-antigen
Reference(s) to other database(s): GlycomeDB:
33545
- Compound ID: 12014
|
R-3HOBut-(1-7)-a-Psep5Ac-(2-4)-+
|
-3)-b-D-Ribp-(1-3)-b-D-GalpNAc-(1- |
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Structure type: polymer chemical repeating unit
Compound class: CPS
- Compound ID: 13942
|
R-Pyr-(2-6:2-4)-a-D-GalpNAc-(1-6)-+
|
-4)-a-D-GalpNAc-(1-4)-a-D-GalpNAcA-(1-3)-a-D-QuipNAc-(1- |
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Structure type: polymer chemical repeating unit
Compound class: CPS
- Compound ID: 728
|
a-L-FucpNAc-(1-4)-+
|
-3)-a-D-GalpNAcA-(1-3)-a-L-FucpNAc-(1-3)-b-D-GlcpNAc-(1- |
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Structure type: polymer chemical repeating unit
Compound class: CPS, O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G73635WZ, GlycomeDB:
25208
- Compound ID: 12583
|
a-Acip5Ac7Ac-(2-6)-+
|
-3)-a-D-GalpNAc-(1-3)-a-L-FucpNAc-(1-3)-a-D-FucpNAc-(1- |
Show graphically |
Structure type: polymer chemical repeating unit
Trivial name: K12 CPS
Compound class: CPS
Reference(s) to other database(s): GTC:G90675WE
- Compound ID: 12883
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a-D-GalpNAc-(1-3)-+
|
-4)-b-D-ManpNAcA-(1-4)-a-L-FucpNAc-(1-3)-a-D-FucpNAc-(1- |
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Structure type: polymer chemical repeating unit
Trivial name: K125 CPS
Compound class: CPS
Reference(s) to other database(s): GTC:G70961ID
- Compound ID: 14650
|
/Variants 0/-+
|
-3)-b-D-ManpNAcA-(1-4)-b-D-ManpNAcA-(1-3)-a-D-QuipNAc4N-(1-
/Variants 0/ is:
?%S-3HOBut-(1-4)-
OR (exclusively)
?%Ac-4)- |
Show graphically |
Structure type: polymer chemical repeating unit
Compound class: CPS
- Compound ID: 13035
|
R-Pyr-(2-6:2-4)-+ S-3HOBut-(1-4)-+
| |
-2)-b-D-Galp-(1-3)-b-D-GlcpNAc-(1-4)-b-D-GlcpA-(1-3)-b-D-QuipNAc4N-(1- |
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Structure type: polymer chemical repeating unit
Trivial name: type K20 CPS
Compound class: CPS
- Compound ID: 12681
|
-3)-a-D-QuipNAc4NAc-(1-4)-b-D-GlcpNAc3NAcA-(1-4)-b-D-GlcpNAc3NAcA-(1-3)-a-D-QuipNAc4NAc-(1- |
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Structure type: polymer chemical repeating unit
Compound class: CPS
Reference(s) to other database(s): GTC:G41730DS
- Compound ID: 16504
|
a-L-FucpNAc-(1-4)-+
|
-3)-a-D-GalpNAcA-(1-3)-a-L-FucpNAc-(1-3)-b-D-FucpNAc-(1- |
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Structure type: polymer chemical repeating unit
Compound class: CPS
- Compound ID: 16505
Structure type: polymer chemical repeating unit
Compound class: CPS
- Compound ID: 16506
|
a-L-FucpNAc-(1-4)-a-D-GalpNAcA-(1-3)-a-L-FucpNAc-(1-3)-D-FucpNAc |
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Structure type: fragment of a bigger structure
; 795.3147 [M-H]-
Compound class: CPS
- Compound ID: 16507
|
a-L-FucpNAc-(1-4)-+
|
a-L-FucpNAc-(1-4)-a-D-GalpNAcA-(1-3)-a-L-FucpNAc-(1-3)-b-D-FucpNAc-(1-3)-a-D-GalpNAcA-(1-3)-a-L-FucpNAc-(1-3)-D-FucpNAc |
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Structure type: fragment of a bigger structure
; 1573.6280 [M-H]-
Compound class: CPS
- Compound ID: 12026
Structure type: polymer chemical repeating unit
Compound class: CPS
Reference(s) to other database(s): GTC:G52976SY
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