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1. (Article ID: 8967)
Tienaho J, Karonen M, Muilu-Mäkelä R, Wähälä K, Leon Denegri E, Franzén R, Karp M, Santala V, Sarjala T
Metabolic profiling of water-soluble compounds from the extracts of dark septate endophytic fungi (DSE) isolated from Scots pine (Pinus sylvestris L.) seedlings using UPLC–Orbitrap–MS
Molecules 24(12) (2019)
ID 2330
Endophytes are microorganisms living inside plant hosts and are known to be beneficial for the host plant vitality. In this study, we isolated three endophytic fungus species from the roots of Scots pine seedlings growing on Finnish drained peatland setting. The isolated fungi belonged to dark septate endophytes (DSE). The metabolic profiles of the hot water extracts of the fungi were investigated using Ultrahigh Performance Liquid Chromatography with Diode Array Detection and Electron Spray Ionization source Mass Spectrometry with Orbitrap analyzer (UPLC-DAD-ESI-MS-Orbitrap). Out of 318 metabolites, we were able to identify 220, of which a majority was amino acids and peptides. Additionally, opine amino acids, amino acid quinones, Amadori compounds, cholines, nucleobases, nucleosides, nucleotides, siderophores, sugars, sugar alcohols and disaccharides were found, as well as other previously reported metabolites from plants or endophytes. Some differences of the metabolic profiles, regarding the amount and identity of the found metabolites, were observed even though the fungi were isolated from the same host. Many of the discovered metabolites have been described possessing biological activities and properties, which may make a favorable contribution to the host plant nutrient availability or abiotic and biotic stress tolerance.
peptides, endophytes, metabolites, endophytic fungi, Phialocephala fortinii, Acephala applanata, Coniochaeta mutabilis, Humicolopsis cephalosporioides, Scots pine, UPLC–MS
NCBI PubMed ID: 31242564Publication DOI: 10.3390/molecules24122330Journal NLM ID: 100964009Publisher: Basel, Switzerland: MDPI
Correspondence: Karp M
gmail.com>; Santala V tuni.fi>; Muilu-Mäkelä R luke.fi>; Sarjala T luke.fi>; Karonen M utu.fi>; Wähälä K helsinki.fi>; Leon Denegri E outlook.com>; Franzén R aalto.fi>; Tienaho J tuni.fi>; Tienaho J luke.fi>
Institutions: Faculty of Natural Sciences and Engineering, Tampere University, Tampere, Finland, Natural Resources Institute Finland (Luke), Helsinki, Finland, Natural Chemistry Research Group, Department of Chemistry, University of Turku, Turku, Finland, Department of Chemistry, University of Helsinki, Helsinki, Finland, School of Chemical Engineering, Department of Chemistry and Materials Science, Aalto University, Espoo, Finland
Methods: PCR, DNA techniques, extraction, cell growth, centrifugation, Orbitrap MS, BLAST, UHPLC-ESI-HRMS, UHPLC-DAD
The publication contains the following compound(s):
- Compound ID: 22135
Structure type: monomer
; 243.08558
C9H13O5N3
Trivial name: cytidine
Compound class: nucleoside
Reference(s) to other database(s): GenDB:KJ649998
- Compound ID: 22136
|
b-D-Ribf-(1-1)-Subst
Subst = pyridin-1-ium-3-carboxamide = SMILES NC(=O)c1ccc{1}[nH+]c1 |
Show graphically |
Structure type: monomer
; 254.08980
C11H14O5N2
Compound class: nucleoside
Reference(s) to other database(s): GenDB:KJ649998
- Compound ID: 22137
|
b-D-Ribf-(1C-5)-Subst
Subst = uracil = SMILES O=c1{5}cc[nH]c(=O)[nH]1 |
Show graphically |
Structure type: monomer
; 244.06948
C9H12O6N2
Trivial name: pseudouridine
Compound class: nucleoside
Reference(s) to other database(s): GenDB:KJ649998
- Compound ID: 22138
Structure type: monomer
; 244.06915
C9H12O6N2
Trivial name: uridine
Compound class: nucleoside
Reference(s) to other database(s): GenDB:KJ649998
- Compound ID: 22139
Structure type: monomer
; 267.09608
C10H13O4N5
Trivial name: adenosine
Compound class: nucleoside
Reference(s) to other database(s): GenDB:KJ649998
- Compound ID: 22140
Structure type: monomer
; 267.09639
C10H13O4N5
Trivial name: 2'-deoxyguanosine
Compound class: nucleoside
Reference(s) to other database(s): GenDB:KJ649998
- Compound ID: 22141
Structure type: monomer
; 256.10554
C11H16O5N2
Trivial name: 3-methylthymidine
Compound class: nucleoside
Reference(s) to other database(s): GenDB:KJ649998
- Compound ID: 22142
|
b-D-Glcp-(1-4)-Subst-(5-7)-Subst1
Subst = (1R,7S)-1,7-dihydroxy-1,4a,5,6,7,7a-hexahydrocyclopenta[c]pyran-4-carboxylic acid = SMILES O=C(O)/C1=C/O{4}[C@@H](O)C2{5}[C@@H](O)CCC12;
Subst1 = 2,5-dihydroxyterephthalic acid = SMILES O=C(O)c1cc(O)c({7}C(=O)O)cc1O |
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Structure type: monomer
; 556.15074
C24H28O15
Trivial name: blumeoside A
Compound class: glycoside
Reference(s) to other database(s): GenDB:KJ649998
- Compound ID: 22143
Structure type: monomer
; 226.09527
C10H14O4N2
Trivial name: 2'-deoxythymidine
Compound class: nucleoside
Reference(s) to other database(s): GenDB:KJ649998
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