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Du R, Qiao X, Zhao F, Song Q, Zhou Q, Wang Y, Pan L, Han Y, Zhou Z
Purification, characterization and antioxidant activity of dextran produced by Leuconostoc pseudomesenteroides from homemade wine
Carbohydrate Polymers 198 (2018)
529-536
Leuconostoc pseudomesenteroides DRP-5
(Ancestor NCBI TaxID 33968,
species name lookup)
Taxonomic group: bacteria / Firmicutes
(Phylum: Firmicutes)
The structure was elucidated in this paperNCBI PubMed ID: 30093031Publication DOI: 10.1016/j.carbpol.2018.06.116Journal NLM ID: 8307156Publisher: Elsevier
Correspondence: zzj

tju.edu.cn
Institutions: School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China
An exopolysaccharide (EPS) was produced by Leuconostoc pseudomesenteroides DRP-5 isolated from homemade wine. The EPS was obtained with ethanol extraction, which was further purified by chromatography of Sephadex G-100 to get a purified fraction. The monosaccharide composition of the EPS was glucose, and its molecular weight (Mw) was 6.23x10(6) Da, as determined by gas chromatography (GC) and high-performance size-exclusion chromatography (HPSEC). Fourier transform infrared spectra (FT-IR) and nuclear magnetic resonance spectra (NMR) showed that the EPS was a linear glucan with α-(1→6)-linked glucosidic bonds. The water holding capacity (WHC), water solubility index (WSI) and emulsifying activity (EA) of DRP-5 EPS were 296.76+/-18.93%, 98.62+/-3.57% and 87.22+/-2.18%, respectively. DRP-5 EPS have a higher degradation temperature of 278.36 degrees C, suggesting high thermal stability of the EPS. Also, DRP-5 EPS was found to have moderate 1,1-diphenyl-2-picrylhydrazyl (DPPH) radical, hydroxyl radical, superoxide anion radical, 2,2'-Azinobis-(3-ethylbenzthiazoline-6-sulphonate) (ABTS) radical, Fe(2+) scavenging activities and reducing power. All these characteristics suggest that DRP-5 EPS might have potential applications in the pharmaceutical, cosmetic and food industries.
characterization, structural analysis, purification, Antioxidant activity, Leuconostoc pseudomesenteroides dextran
Structure type: structural motif or average structure ; 6230000
Location inside paper: abstract, p.532
Trivial name: dextran
Compound class: EPS
Contained glycoepitopes: IEDB_142488,IEDB_144998,IEDB_146664,IEDB_158538,IEDB_983931,SB_192
Methods: gel filtration, 13C NMR, 1H NMR, GC, FTIR, composition analysis, HPSEC, statistical analysis, SEM, emulsifying activity, thermodynamic stability analysis, antioxidant activity
NCBI Taxonomy refs (TaxIDs): 33968Reference(s) to other database(s): GTC:G69605LY
Show glycosyltransferases
1H NMR data: present in publication
|
13C NMR data: present in publication
|
There is only one chemically distinct structure:
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Gan L, Li X, Wang H, Peng B, Tian Y
Structural characterization and functional evaluation of a novel exopolysaccharide from the moderate halophile Gracilibacillus sp. SCU50
International Journal of Biological Macromolecules 154 (2020)
1140-1148
SUG-(1-6)-a-D-Manp-(1-3)-+
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SUG-(1-6)-a-D-Manp-(1-2)-+ |
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a-D-Manp-(1-2)-+ a-D-Manp-(1-3)-+ | |
| | | |
a-D-Manp-(1-6)-{{{-a-D-Manp-(1-6)-}}}a-D-Manp-(1-6)-a-D-Manp-(1-6)-a-D-Manp |
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Gracilibacillus sp. SCU50
(NCBI TaxID 2663022,
species name lookup)
Taxonomic group: bacteria / Firmicutes
(Phylum: Firmicutes)
The structure was elucidated in this paperNCBI PubMed ID: 31756464Publication DOI: 10.1016/j.ijbiomac.2019.11.143Journal NLM ID: 7909578Publisher: Butterworth-Heinemann
Correspondence: yqtian

scu.edu.cn
Institutions: College of Biomass Science and Engineering, Sichuan University, Chengdu 610065, PR China, Key Laboratory of Leather Chemistry and Engineering (Sichuan University), Ministry of Education, Chengdu 610065, PR China
A novel exopolysaccharide (named mhEPS) with a molecular weight of 5.881 × 104 g/mol was isolated from Gracilibacillus sp. SCU50's high-salt fermentation broth by ethanol precipitation, anion-exchange and gel-filtration chromatography before being structurally characterized and functionally evaluated. mhEPS consists of mannose, galactose, glucose and fucose in a molar ratio of 90.81:5.76:2.22:1.21. The backbone of mhEPS was (1→3,6)-linked α-D-mannopyranose residues, branched by single α-D-mannopyranose units attached to the main chain at C-2 position of every residue. The water solubility index, water holding capacity and oil holding capacity of mhEPS were 93.53, 14.89 and 1023.34%, respectively. mhEPS showed to possess good emulsifying activity against all tested substrates, and it could potentially increase the high-salinity tolerance of strain SCU50. The lack of toxicity of mhEPS was also preliminarily determined. Due to the functional properties of mhEPS, it is a good candidate to develop as an active ingredient in food, cosmetics and detergents.
exopolysaccharide, Structural characterization, functional evaluation, Gracilibacillus sp.
Structure type: structural motif or average structure ; 58810
Location inside paper: p.1147, Fig.5
Compound class: EPS
Contained glycoepitopes: IEDB_130701,IEDB_136104,IEDB_140116,IEDB_141793,IEDB_141828,IEDB_141829,IEDB_141831,IEDB_143632,IEDB_144983,IEDB_152206,IEDB_153220,IEDB_153762,IEDB_153763,IEDB_164174,IEDB_76933,IEDB_857732,IEDB_857733,IEDB_857734,IEDB_857735,IEDB_983930,SB_136,SB_191,SB_196,SB_197,SB_198,SB_44,SB_67,SB_72,SB_73,SB_77
Methods: gel filtration, 13C NMR, 1H NMR, NMR-2D, GC-MS, sugar analysis, FTIR, genetic methods, SEM, emulsifying activity, HPSEC-RI-MALLS, WSI, WHC, OHC
Comments, role: One of the possible chemical structures of EPS. Published NMR chemical shifts of #6,6,3_aDManp (C4 and C5) and #6,6,6,2_aDManp (C4 and C5) that seemed erroneously interchanged in the published assignment were swapped by CSDB staff.
NCBI Taxonomy refs (TaxIDs): 2663022
Show glycosyltransferases
NMR conditions: in D2O at 298 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
6,6,6,2 aDManp 103.97 71.60 71.74 67.93 74.82 62.52
6,6,6 aDManp 102.06 79.93 71.89 67.5 68.21 68.43
3,6 SUG
3 aDManp 103.69 71.14 71.52 67.47 67.87 68.23
6,2,6 SUG
6,2 aDManp 103.69 71.74 71.52 67.47 67.87 68.23
6,6,6,6 aDManp
6,6,3 aDManp 103.97 71.60 71.74 67.93 74.82 62.52
6,6 aDManp 99.74 71.22 79.40 67.33 ? ?
6 aDManp 102.06 79.93 71.89 67.5 68.21 68.43
aDManp 99.74 71.22 79.40 67.33 ? ?
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
6,6,6,2 aDManp 5.20 4.11 3.88 3.80 3.78 3.77-3.79
6,6,6 aDManp 5.34 4.16 3.94 3.81 3.70 3.68-3.72
3,6 SUG
3 aDManp 5.08 4.26 3.99 3.84 3.73 3.75
6,2,6 SUG
6,2 aDManp 5.17 4.26 3.99 3.84 3.73 3.75
6,6,6,6 aDManp
6,6,3 aDManp 5.10 4.10 3.96 3.80 3.78 3.77-3.79
6,6 aDManp 5.14 4.07 4.00 3.82 ? ?
6 aDManp 5.34 4.16 3.94 3.81 3.70 3.68-3.72
aDManp 5.14 4.07 4.00 3.82 ? ?
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
6,6,6,2 aDManp 103.97/5.20 71.60/4.11 71.74/3.88 67.93/3.80 74.82/3.78 62.52/3.77-3.79
6,6,6 aDManp 102.06/5.34 79.93/4.16 71.89/3.94 67.5/3.81 68.21/3.70 68.43/3.68-3.72
3,6 SUG
3 aDManp 103.69/5.08 71.14/4.26 71.52/3.99 67.47/3.84 67.87/3.73 68.23/3.75
6,2,6 SUG
6,2 aDManp 103.69/5.17 71.74/4.26 71.52/3.99 67.47/3.84 67.87/3.73 68.23/3.75
6,6,6,6 aDManp
6,6,3 aDManp 103.97/5.10 71.60/4.10 71.74/3.96 67.93/3.80 74.82/3.78 62.52/3.77-3.79
6,6 aDManp 99.74/5.14 71.22/4.07 79.40/4.00 67.33/3.82 ?/? ?/?
6 aDManp 102.06/5.34 79.93/4.16 71.89/3.94 67.5/3.81 68.21/3.70 68.43/3.68-3.72
aDManp 99.74/5.14 71.22/4.07 79.40/4.00 67.33/3.82 ?/? ?/?
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
6,6,6,2 | aDManp | 5.20 | 4.11 | 3.88 | 3.80 | 3.78 | 3.77 3.79 |
6,6,6 | aDManp | 5.34 | 4.16 | 3.94 | 3.81 | 3.70 | 3.68 3.72 |
3,6 | SUG | |
3 | aDManp | 5.08 | 4.26 | 3.99 | 3.84 | 3.73 | 3.75 |
6,2,6 | SUG | |
6,2 | aDManp | 5.17 | 4.26 | 3.99 | 3.84 | 3.73 | 3.75 |
6,6,6,6 | aDManp | |
6,6,3 | aDManp | 5.10 | 4.10 | 3.96 | 3.80 | 3.78 | 3.77 3.79 |
6,6 | aDManp | 5.14 | 4.07 | 4.00 | 3.82 | ? | ? |
6 | aDManp | 5.34 | 4.16 | 3.94 | 3.81 | 3.70 | 3.68 3.72 |
| aDManp | 5.14 | 4.07 | 4.00 | 3.82 | ? | ? |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
6,6,6,2 | aDManp | 103.97 | 71.60 | 71.74 | 67.93 | 74.82 | 62.52 |
6,6,6 | aDManp | 102.06 | 79.93 | 71.89 | 67.5 | 68.21 | 68.43 |
3,6 | SUG | |
3 | aDManp | 103.69 | 71.14 | 71.52 | 67.47 | 67.87 | 68.23 |
6,2,6 | SUG | |
6,2 | aDManp | 103.69 | 71.74 | 71.52 | 67.47 | 67.87 | 68.23 |
6,6,6,6 | aDManp | |
6,6,3 | aDManp | 103.97 | 71.60 | 71.74 | 67.93 | 74.82 | 62.52 |
6,6 | aDManp | 99.74 | 71.22 | 79.40 | 67.33 | ? | ? |
6 | aDManp | 102.06 | 79.93 | 71.89 | 67.5 | 68.21 | 68.43 |
| aDManp | 99.74 | 71.22 | 79.40 | 67.33 | ? | ? |
|
 The spectrum also has 4 signals at unknown positions (not plotted). |
There is only one chemically distinct structure:
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Grinev VS, Tregubova KV, Anis'kov AA, Sigida EN, Shirokov AA, Fedonenko YP, Yegorenkova IV
Isolation, structure, and potential biotechnological applications of the exopolysaccharide from Paenibacillus polymyxa 92
Carbohydrate Polymers 232 (2020)
115780
Paenibacillus polymyxa 92 (VNIISHM 92)
(Ancestor NCBI TaxID 1406,
species name lookup)
Taxonomic group: bacteria / Firmicutes
(Phylum: Firmicutes)
The structure was elucidated in this paperNCBI PubMed ID: 31952589Publication DOI: 10.1016/j.carbpol.2019.115780Journal NLM ID: 8307156Publisher: Elsevier
Correspondence: V.S. Grinev <grinev

ibppm.ru>
Institutions: Institute of Biochemistry and Physiology of Plants and Microorganisms, Russian Academy of Sciences, 13 Prospekt Entuziastov, Saratov 410049, Russia, Chernyshevsky Saratov State University, 83 Ulitsa Astrakhanskaya, Saratov 410012, Russia, VIC Animal Health, VIC GROUP, 46G Berezovaya Ulitsa, Severny 1, Belgorodskaya Oblast, 8570, Russia
Paenibacillus polymyxa 92, isolated from wheat roots, produced large amounts (38.4 g L-1) of exopolysaccharide (EPS) in a liquid nutrient medium containing 10 % (w/v) sucrose. The EPS was precipitated from the culture broth with cold acetone and was purified by gel filtration and anion-exchange chromatography. The molecular mass of the EPS was 2.29-1.10 × 105 Da. Diffuse reflectance infrared Fourier transform and nuclear magnetic resonance spectra showed that the EPS was a linear β-(2→6)-linked fructan (levan). Aqueous EPS solutions showed pseudoplastic behavior when shear stress was applied at different temperatures. By using the Ostwald-de Waele model, the rheological characteristics of the EPS solution were ascertained. The sorption capacity of the EPS for Zn(II), Cd(II), Pb(II), and Cu(II) was investigated. Sorption was maximal (q = 481 mg g-1) for Cu(II) ions. In model experiments, treatment of wheat seeds with EPS solution significantly increased the length of seedling roots and shoots.
exopolysaccharide, Rheology, levan, Paenibacillus polymyxa, Plant-growth-promoting activity
Structure type: homopolymer ; 110000-229000
Location inside paper: table 2
Trivial name: levan-type polysaccharide
Compound class: EPS
Contained glycoepitopes: IEDB_923066
Methods: 13C NMR, 1H NMR, NMR-2D, chemical analysis, GPC, HPAEC-PAD, metal adsorption assays, SEM, emulsifying activity, rheological analysis, DRIFT spectroscopy
NCBI Taxonomy refs (TaxIDs): 1406Reference(s) to other database(s): GTC:G29465PK
Show glycosyltransferases
NMR conditions: in D2O at 303 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
bDFruf 61.7 105.3 78.0 76.7 81.4 64.6
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
bDFruf 3.70-3.77 - 4.19 4.09 3.95 3.60-3.90
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
bDFruf 61.7/3.70-3.77 78.0/4.19 76.7/4.09 81.4/3.95 64.6/3.60-3.90
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| bDFruf | 3.70 3.77 |
| 4.19 | 4.09 | 3.95 | 3.60 3.90 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| bDFruf | 61.7 | 105.3 | 78.0 | 76.7 | 81.4 | 64.6 |
|
There is only one chemically distinct structure:
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