Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
The structure was elucidated in this paperPublication DOI: 10.1016/j.carbpol.2020.117139Journal NLM ID: 8307156Publisher: Elsevier
Correspondence: mousun

ouc.edu.cn
Institutions: College of Food Science and Engineering, Ocean University of China, Qingdao, 266003, Shandong, PR China, School of Medicine and Pharmacy, Ocean University of China, Qingdao, 266003, Shandong, PR China
Fucose-containing oligosaccharides (FCOs) have important applications in the food, medicine, and cosmetics industries owing to their unique biological activities. The degradation of microbial fucose-containing exopolysaccharide (FcEPS) is a promising strategy for obtaining FCOs, and bacteriophage-borne glycanase is a useful tool for degrading FcEPS. Here, we aimed to obtain FCOs using bacteriophage-borne glycanase to depolymerize FcEPS from Enterobacter sakazakii. The FcEPS was mainly composed of l-fucose (42.72 %), d-galactose (20.59 %), and d-glucose (21.81 %). Based on the results of nuclear magnetic resonance and mass spectrometry, the obtained FCOs were disaccharide fragments with backbones of β-d-Glcp-(1→4)-β-l-Fucp and α-d-Galp-(1→3)-β-l-Fucp, respectively. So far, few studies of disaccharides prepared from FcEPS have been reported. This study demonstrated that the FcEPS of E. sakazakii was a reliable fucose-containing disaccharide source and that bacteriophage-borne glycanase was an effective degradation tool for obtaining FCOs fragments from FcEPS.
fucose, Enterobacter sakazakii, bacteriophage-borne glycanase, fucose-containing disaccharide, microbial exopolysaccharide
Structure type: oligomer
Location inside paper: table 2, p. 117139-2
Trivial name: fucose-containing oligosaccharide (FCO), glucofucobiose
Compound class: EPS
Contained glycoepitopes: IEDB_142488,IEDB_142489,IEDB_144562,IEDB_146664,IEDB_152214,IEDB_983931,SB_192,SB_86
Methods: 13C NMR, 1H NMR, NMR-2D, sugar analysis, HPLC, bacteriophage degradation, ESI-CID-MS/MS, TEM, bacteriophage characterization
Enzymes that release or process the structure: bacteriophage-borne glycanase
Comments, role: Error in the article: NMR chemical shifts in Table 2 contradict the structure (C1, and probably C5). Anomeric configuration and -OH group at reducing end are subect to check.
Related record ID(s): 10968
NCBI Taxonomy refs (TaxIDs): 28141
Show glycosyltransferases
NMR conditions: in D2O at 298(H) K
[as TSV]
13C NMR data:
missing...
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
4 bDGlcp 4.634 3.471 3.665 4.005 3.551 3.671-3.790
bLFucp 4.532 3.472 3.541 3.787 3.905 1.377
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
4 | bDGlcp | 4.634 | 3.471 | 3.665 | 4.005 | 3.551 | 3.671 3.790 |
| bLFucp | 4.532 | 3.472 | 3.541 | 3.787 | 3.905 | 1.377 |
|
There is only one chemically distinct structure:
Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
The structure was elucidated in this paperPublication DOI: 10.1016/j.carbpol.2020.117139Journal NLM ID: 8307156Publisher: Elsevier
Correspondence: mousun

ouc.edu.cn
Institutions: College of Food Science and Engineering, Ocean University of China, Qingdao, 266003, Shandong, PR China, School of Medicine and Pharmacy, Ocean University of China, Qingdao, 266003, Shandong, PR China
Fucose-containing oligosaccharides (FCOs) have important applications in the food, medicine, and cosmetics industries owing to their unique biological activities. The degradation of microbial fucose-containing exopolysaccharide (FcEPS) is a promising strategy for obtaining FCOs, and bacteriophage-borne glycanase is a useful tool for degrading FcEPS. Here, we aimed to obtain FCOs using bacteriophage-borne glycanase to depolymerize FcEPS from Enterobacter sakazakii. The FcEPS was mainly composed of l-fucose (42.72 %), d-galactose (20.59 %), and d-glucose (21.81 %). Based on the results of nuclear magnetic resonance and mass spectrometry, the obtained FCOs were disaccharide fragments with backbones of β-d-Glcp-(1→4)-β-l-Fucp and α-d-Galp-(1→3)-β-l-Fucp, respectively. So far, few studies of disaccharides prepared from FcEPS have been reported. This study demonstrated that the FcEPS of E. sakazakii was a reliable fucose-containing disaccharide source and that bacteriophage-borne glycanase was an effective degradation tool for obtaining FCOs fragments from FcEPS.
fucose, Enterobacter sakazakii, bacteriophage-borne glycanase, fucose-containing disaccharide, microbial exopolysaccharide
Structure type: oligomer
Location inside paper: table 2, p. 117139-2
Trivial name: fucose-containing oligosaccharide (FCO)
Compound class: EPS
Contained glycoepitopes: IEDB_136906,IEDB_137472,IEDB_141794,IEDB_142489,IEDB_144562,IEDB_151528,IEDB_152214,IEDB_190606,SB_7,SB_86
Methods: 13C NMR, 1H NMR, NMR-2D, sugar analysis, HPLC, bacteriophage degradation, ESI-CID-MS/MS, TEM, bacteriophage characterization
Enzymes that release or process the structure: bacteriophage-borne glycanase
Related record ID(s): 10405
NCBI Taxonomy refs (TaxIDs): 28141
Show glycosyltransferases
NMR conditions: in D2O at 298 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
3 aDGalp 103.990 73.346 70.147 70.934 72.422 62.587
bLFucp 94.321 70.488 77.929 71.546 68.410 17.250
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
3 aDGalp 5.260 3.824 4.063 3.871 3.488 3.550-3.762
bLFucp 4.324 3.778 3.487 3.667 3.837 1.331
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
3 aDGalp 103.990/5.260 73.346/3.824 70.147/4.063 70.934/3.871 72.422/3.488 62.587/3.550-3.762
bLFucp 94.321/4.324 70.488/3.778 77.929/3.487 71.546/3.667 68.410/3.837 17.250/1.331
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
3 | aDGalp | 5.260 | 3.824 | 4.063 | 3.871 | 3.488 | 3.550 3.762 |
| bLFucp | 4.324 | 3.778 | 3.487 | 3.667 | 3.837 | 1.331 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
3 | aDGalp | 103.990 | 73.346 | 70.147 | 70.934 | 72.422 | 62.587 |
| bLFucp | 94.321 | 70.488 | 77.929 | 71.546 | 68.410 | 17.250 |
|
There is only one chemically distinct structure: