Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Associated disease: infection due to Shigella dysenteriae [ICD11:
XN285 
]
The structure was elucidated in this paperPublication DOI: 10.1016/0008-6215(88)84109-0Journal NLM ID: 0043535Publisher: Elsevier
Institutions: N.D. Zelinsky Institute of Organic Chemistry, Academy of Sciences of the U.S.S.R., Moscow U.S.S.R., G.N. Gabrichevsky Institute of Epidemiology and Microbiology, Health Ministry of the R.S.F.S.R., Moscow U.S.S.R.
4-(N-Acetylglycyl)amino-4,6-dideoxy-d-glucose has been identified as a component of the Shigella dysenteriae type 7 O-specific polysaccharide, in addition to the previously reported 2-acetamido-2-deoxy-d-glucose and 2-acetamido-2-deoxy-d-galacturonic acid. On the basis of selective cleavage with anhydrous hydrogen fluoride and analysis by 1H- and 13C-n.m.r. spectroscopy and f.a.b.-mass spectrometry, it was concluded that the tetrasaccharide repeating-unit of the polysaccharide has the following structure: [formula; see text] where d-GalNAcAN is 2-acetamido-2-deoxy-d-galacturonamide and d-Qui4N is 4-amino-4,6-dideoxy-d-glucose.
Structure type: polymer chemical repeating unit
Location inside paper: abstract, p. 57, structure 7
Compound class: O-polysaccharide, O-antigen
Contained glycoepitopes: IEDB_137340,IEDB_141807,IEDB_151531
Methods: 13C NMR, 1H NMR, gel filtration, FAB-MS, HF solvolysis, sugar analysis, acid hydrolysis, paper chromatography, de-O-acetylation, ion-exchange chromatography, optical rotation measurement
Related record ID(s): 115428, 115429, 115431
NCBI Taxonomy refs (TaxIDs): 622
Show glycosyltransferases
NMR conditions: in D2O at 303(C) K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
3,3,4,2 Ac 172.3-176.1 22.8-23.6
3,3,4,3 Ac 172.3-176.1 21.3-21.4
3,3,4,6 NH2
3,3,4 aDGalpNA 99.8 48.9 71.9 76.7 72.1 172.3-176.1
3,3,2 Ac 172.3-176.1 22.8-23.6
3,3 aDGalpNA 99.9 50.9 67.9 78.4 72.1 172.3-176.1
3,2 Ac 172.3-176.1 22.8-23.6
3 aDGlcpN 97.9 53.3 79.4 71.9 72.7 61.4
4,2 Ac 172.3-176.1 22.8-23.6
4 xXGly 172.3-176.1 44.1
bDQuip4N 104.7 74.0 80.0 57.8 72.1 17.7
1H NMR data:
missing...
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 3,3,4,2 | Ac | 172.3 176.1 | 22.8 23.6 | |
| 3,3,4,3 | Ac | 172.3 176.1 | 21.3 21.4 | |
| 3,3,4,6 | NH2 | |
| 3,3,4 | aDGalpNA | 99.8 | 48.9 | 71.9 | 76.7 | 72.1 | 172.3 176.1 |
| 3,3,2 | Ac | 172.3 176.1 | 22.8 23.6 | |
| 3,3 | aDGalpNA | 99.9 | 50.9 | 67.9 | 78.4 | 72.1 | 172.3 176.1 |
| 3,2 | Ac | 172.3 176.1 | 22.8 23.6 | |
| 3 | aDGlcpN | 97.9 | 53.3 | 79.4 | 71.9 | 72.7 | 61.4 |
| 4,2 | Ac | 172.3 176.1 | 22.8 23.6 | |
| 4 | xXGly | 172.3 176.1 | 44.1 | |
| | bDQuip4N | 104.7 | 74.0 | 80.0 | 57.8 | 72.1 | 17.7 |
|
There is only one chemically distinct structure: