Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Host organism: Homo sapiens
Associated disease: infection due to Escherichia coli [ICD11:
XN6P4 
]
The structure was elucidated in this paperPublication DOI: 10.1134/S0026261717010167Journal NLM ID: 0376652Publisher: Moskva: Izdatelstvo Nauka
Correspondence: varbanets_imv

ukr.net; varbanets

serv.imv.kiev.ua
Institutions: Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia, Zabolotny Institute of Microbiology and Virology, National Academy of Sciences of Ukraine, Kiev, Ukraine, Mechnikov Institute of Microbiology and Immunology, National Academy of Medical Sciences, Kharkov, Ukraine
The lipopolysaccharide (LPS) of Escherichia coli 126 was isolated and studied. The lipid A fatty acid composition of the investigated LPS was similar to that of other members of the family Enterobacteriaceae. The E. coli 126 LPS was more toxic than the LPSs of previously studied E. coli strains and of other members of the Enterobacteriaceae (Budvicia aquatica and Pragia fontium), and was less pyrogenic than pyrogenal. SDS-PAG electrophoresis showed a bimodal distribution typical of S-form LPSs. The LPS of E. coli 126 decreased the adhesive index indicating a possible competition between LPS molecules of E. coli 126 and adhesins of E. coli F-50 on rabbit erythrocytes. The LPS of E. coli 126 in a homologous system showed antigenic activity in the reactions of double immunodiffusion in agar by Ouchterlony. No serological cross-reaction of the LPS of other E. coli strains, as well as of that of the B. aquatica type strain, with the antiserum to E. coli 126 was observed. The structural components of the lipopolysaccharide obtained by mild acid hydrolysis were lipid A, the core oligosaccharide, and the O-specific polysaccharide. Based on the data of monosaccharide analysis and 1H and 13C NMR spectroscopy it was found that the O-specific polysaccharide had the structure characteristic of the representatives of E. coli serogroup O15.
Lipopolysaccharide, Escherichia coli, O-specific polysaccharide, biological activity
Structure type: polymer chemical repeating unit
Location inside paper: p.61, table 2
Compound class: O-polysaccharide, O-antigen
Contained glycoepitopes: IEDB_135813,IEDB_136044,IEDB_137340,IEDB_137472,IEDB_141794,IEDB_141807,IEDB_151531,IEDB_190606,SB_165,SB_166,SB_187,SB_195,SB_7,SB_88
Methods: gel filtration, 13C NMR, 1H NMR, methylation, SDS-PAGE, sugar analysis, mild acid hydrolysis, immunodiffusion assays, toxicity assays, pyrogenicity assays, adhesive activity
Biological activity: The LD50 value of the tested LPS was 11.25 μg/mouse
Comments, role: published polymerization frame was shifted for conformity with other records.
NCBI Taxonomy refs (TaxIDs): 562,
2067424Reference(s) to other database(s): GTC:G61174GL, GlycomeDB:
3500
Show glycosyltransferases
NMR conditions: in D2O at 303 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
3,3 bDGalp 101.5 79.7 75.1 70.5 76.7 62.5
3,2 Ac
3 aLFucpN 99.2 51.2 78.2 70.6 67.2 16.8
2 Ac
bDGlcpN 103.4 57.1 80.0 70.2 77.7 62.5
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
3,3 bDGalp 4.48 3.63 3.63 3.84 3.62 3.77
3,2 Ac
3 aLFucpN 5.06 4.20 4.06 3.84 4.42 1.26
2 Ac
bDGlcpN 4.72 3.88 3.66 3.49 3.48 3.73-3.96
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
3,3 bDGalp 101.5/4.48 79.7/3.63 75.1/3.63 70.5/3.84 76.7/3.62 62.5/3.77
3,2 Ac
3 aLFucpN 99.2/5.06 51.2/4.20 78.2/4.06 70.6/3.84 67.2/4.42 16.8/1.26
2 Ac
bDGlcpN 103.4/4.72 57.1/3.88 80.0/3.66 70.2/3.49 77.7/3.48 62.5/3.73-3.96
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
3,3 | bDGalp | 4.48 | 3.63 | 3.63 | 3.84 | 3.62 | 3.77 |
3,2 | Ac | |
3 | aLFucpN | 5.06 | 4.20 | 4.06 | 3.84 | 4.42 | 1.26 |
2 | Ac | |
| bDGlcpN | 4.72 | 3.88 | 3.66 | 3.49 | 3.48 | 3.73 3.96 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
3,3 | bDGalp | 101.5 | 79.7 | 75.1 | 70.5 | 76.7 | 62.5 |
3,2 | Ac | |
3 | aLFucpN | 99.2 | 51.2 | 78.2 | 70.6 | 67.2 | 16.8 |
2 | Ac | |
| bDGlcpN | 103.4 | 57.1 | 80.0 | 70.2 | 77.7 | 62.5 |
|
There is only one chemically distinct structure: