Taxonomic group: bacteria / Actinobacteria
(Phylum: Actinobacteria)
The structure was elucidated in this paperNCBI PubMed ID: 28783569Publication DOI: 10.1016/j.carres.2017.07.008Journal NLM ID: 0043535Publisher: Elsevier
Correspondence: streshinskaya
mail.ru
Institutions: School of Biology, M. V. Lomonosov Moscow State University, Moscow, Russian Federation, N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky Prospect, 47, Moscow, Russian Federation, All-Russian Collection of Microorganisms (VKM), G. K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Russian Academy of Sciences, Pushchino, Russia
The cell walls of two strains of the genus Promicromonospora (phylum Actinobacteria) were found to include non-phosphorylated anionic glycopolymers with pyruvic acid acetals of R-configuration. The cell wall of the type strain P. citrea 665T contains two glycopolymers of the sort, including the Kdn-teichulosonic acid with the repeating unit →6)-α-d-Glcp/→6)-α-d-Glcp3SO3-(1→4)-α-[7,9Pyr]-Kdn-(2→, and the galactan with the repeating unit →3)-α-[4,6Pyr]-d-Galp-2OAc-(1→ . The cell wall of Promicromonospora sp.VKM Ac-1028 contains the teichuronic acid with the repeating unit →6)-α-d-Glcp-(1→4)-β-[2,3Pyr]-d-GlcpA-(1→. The detected glycopolymer structures are reported for the first time. Presented results expand the notion on the diversity of the organic world and on the role of the structures and composition of cell wall polymers in bacterial taxonomy. The glycopolymer structures were established by using a combination of chemical methods, NMR- and IR-spectroscopy, and ESI MS.
pyruvate, teichuronic acid, Galactan, NMR-spectroscopy, Kdn-teichulosonic acid, Promicromonospora
Structure type: polymer chemical repeating unit
Location inside paper: abstract, p.139, table 2, glycopolymer II (teichulosonic acid), fig.9
Trivial name: teichulosonic acid
Compound class: cell wall polysaccharide
Contained glycoepitopes: IEDB_142488,IEDB_144998,IEDB_146664,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, NMR-2D, IR, sugar analysis, ESI-MS, acid hydrolysis, GLC, paper chromatography, de-O-acetylation, GPC, depyruvylation
Comments, role: Promicromonospora citrea VKM Ac-665T (= ATCC 15908 = DSM 43110); NMR data for -6)aDGlcp(1- residue, 1H: 5.08 3.58 3.78 3.65 4.04 3.66-4.13, 13C: 97.0 72.4 73.9 70.4 71.8 63.5
Related record ID(s): 11890, 12078, 12080, 12081, 12082, 12083
NCBI Taxonomy refs (TaxIDs): 43677
Show glycosyltransferases
NMR conditions: in D2O at 303 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6 C7 C8 C9
4,3 %xXS?
4 aDGlcp 96.8 71.2 83.3 69.1 71.5 63.7
9 x?Pyr 177.4 102.6 25.7
aXKdnp 175.0 101.8 37.8 76.6 68.4 72.8 75.9 61.2 67.6
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6 H7 H8 H9
4,3 %xXS?
4 aDGlcp 5.11 3.75 4.54 3.87 4.10 3.68-4.11
9 x?Pyr - - 1.51
aXKdnp - - 1.71-2.81 3.68 3.87 3.91 3.88 4.04 3.59-4.04
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6 C7/H7 C8/H8 C9/H9
4,3 %xXS?
4 aDGlcp 96.8/5.11 71.2/3.75 83.3/4.54 69.1/3.87 71.5/4.10 63.7/3.68-4.11
9 x?Pyr 25.7/1.51
aXKdnp 37.8/1.71-2.81 76.6/3.68 68.4/3.87 72.8/3.91 75.9/3.88 61.2/4.04 67.6/3.59-4.04
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 | H7 | H8 | H9 |
4,3 | %xXS? | |
4 | aDGlcp | 5.11 | 3.75 | 4.54 | 3.87 | 4.10 | 3.68 4.11 | |
9 | x?Pyr |
|
| 1.51 | |
| aXKdnp |
|
| 1.71 2.81 | 3.68 | 3.87 | 3.91 | 3.88 | 4.04 | 3.59 4.04 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 | C7 | C8 | C9 |
4,3 | %xXS? | |
4 | aDGlcp | 96.8 | 71.2 | 83.3 | 69.1 | 71.5 | 63.7 | |
9 | x?Pyr | 177.4 | 102.6 | 25.7 | |
| aXKdnp | 175.0 | 101.8 | 37.8 | 76.6 | 68.4 | 72.8 | 75.9 | 61.2 | 67.6 |
|
There is only one chemically distinct structure: