Taxonomic group: bacteria / Bacteroidetes
(Phylum: Bacteroidetes)
Host organism: Homo sapiens
Associated disease: periodontitis [ICD11:
DA0C 
]
The structure was elucidated in this paperNCBI PubMed ID: 27986835Publication DOI: 10.1093/glycob/cww129Journal NLM ID: 9104124Publisher: IRL Press at Oxford University Press
Correspondence: christina.schaeffer

boku.ac.at; Ian.Schoenhofen

nrc-cnrc.gc.ca
Institutions: Department of NanoBiotechnology, NanoGlycobiology Unit, Universität für Bodenkultur Wien, Muthgasse 11, A-1190 Vienna, Austria, Department of Chemistry, Universität für Bodenkultur Wien, Muthgasse 18, A-1190 Vienna, Austria, National Research Council, Human Health Therapeutics Portfolio, 100 Sussex Drive, Ottawa, ON, Canada K1A 0R6, Department of Oral Biology, School of Dental Medicine, University at Buffalo, 311 Foster Hall, 3435 Main St. Buffalo, New York 14214, USA
Tannerella forsythia is an anaerobic, Gram-negative periodontal pathogen. A unique O-linked oligosaccharide decorates the bacterium's cell surface proteins and was shown to modulate the host immune response. In our study, we investigated the biosynthesis of the nonulosonic acid (NulO) present at the terminal position of this glycan. A bioinformatic analysis of T. forsythia genomes revealed a gene locus for the synthesis of pseudaminic acid (Pse) in the type strain ATCC 43037 while strains FDC 92A2 and UB4 possess a locus for the synthesis of legionaminic acid (Leg) instead. In contrast to the NulO in ATCC 43037, which has been previously identified as a Pse derivative (5-N-acetimidoyl-7-N-glyceroyl-3,5,7,9-tetradeoxy-l-glycero-l-manno-NulO), glycan analysis of strain UB4 performed in this study indicated a 350-Da, possibly N-glycolyl Leg (3,5,7,9-tetradeoxy-d-glycero-d-galacto-NulO) derivative with unknown C5,7 N-acyl moieties. We have expressed, purified and characterized enzymes of both NulO pathways to confirm these genes' functions. Using capillary electrophoresis (CE), CE-mass spectrometry and NMR spectroscopy, our studies revealed that Pse biosynthesis in ATCC 43037 essentially follows the UDP-sugar route described in Helicobacter pylori, while the pathway in strain FDC 92A2 corresponds to Leg biosynthesis in Campylobacter jejuni involving GDP-sugar intermediates. To demonstrate that the NulO biosynthesis enzymes are functional in vivo, we created knockout mutants resulting in glycans lacking the respective NulO. Compared to the wild-type strains, the mutants exhibited significantly reduced biofilm formation on mucin-coated surfaces, suggestive of their involvement in host-pathogen interactions or host survival. This study contributes to understanding possible biological roles of bacterial NulOs.
Campylobacter jejuni, Helicobacter, Biofilm, biosynthesis pathway, pseudaminic and legionaminic acid, bacterium
Structure type: monomer
Location inside paper: p.345, fig.2, compound VIIp, fig.5, table II, CMP-pseudaminic acid
Trivial name: CMP-pseudaminic acid
Compound class: nucleoside monophosphate sugar
Contained glycoepitopes: IEDB_141494,IEDB_167475,IEDB_838988
Methods: 13C NMR, 1H NMR, PCR, SDS-PAGE, DNA techniques, b-elimination, genetic methods, biochemical methods, CE, CE-MS, bioinformatic analysis, LC-ESI-MS/MS, biofilm assays
Enzymes that release or process the structure: PseB, PseC, PseH, PseI, PseF (CMP-pseudaminic acid synthetase, from H. pylori)
Synthetic data: enzymatic
Comments, role: The NMR temperature was not indicated
Related record ID(s): 11895, 12085, 12086, 12087, 12088
NCBI Taxonomy refs (TaxIDs): 203275
Show glycosyltransferases
NMR conditions: in D2O
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6 C7 C8 C9
5,0,5 Ac
5,0,7 Ac
5,0 ?XPse? ? ? 37.1 66.1 50.0 73.9 55.0 69.9 18.4
5 P
xXnucC
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6 H7 H8 H9
5,0,5 Ac
5,0,7 Ac
5,0 ?XPse? - - 1.60-2.21 4.23 4.28 4.29 4.02 4.11 1.19
5 P
xXnucC
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6 C7/H7 C8/H8 C9/H9
5,0,5 Ac
5,0,7 Ac
5,0 ?XPse? 37.1/1.60-2.21 66.1/4.23 50.0/4.28 73.9/4.29 55.0/4.02 69.9/4.11 18.4/1.19
5 P
xXnucC
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 | H7 | H8 | H9 |
5,0,5 | Ac | |
5,0,7 | Ac | |
5,0 | ?XPse? |
|
| 1.60 2.21 | 4.23 | 4.28 | 4.29 | 4.02 | 4.11 | 1.19 |
5 | P | |
| xXnucC | |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 | C7 | C8 | C9 |
5,0,5 | Ac | |
5,0,7 | Ac | |
5,0 | ?XPse? | ? | ? | 37.1 | 66.1 | 50.0 | 73.9 | 55.0 | 69.9 | 18.4 |
5 | P | |
| xXnucC | |
|
 The spectrum also has 2 signals at unknown positions (not plotted). |
There is only one chemically distinct structure:
Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Associated disease: infection due to Campylobacter jejuni [ICD11:
XN4Q5 
]
NCBI PubMed ID: 17631632Journal NLM ID: 2985120RPublisher: American Society for Microbiology
Correspondence: guerryp

nmrc.navy.mil
Institutions: Enteric Diseases Department, Naval Medical Research Center, 503 Robert Grant Ave., Silver Spring, MD 20910, USA
Campylobacter jejuni has systems for N- and O-linked protein glycosylation. Although biochemical evidence demonstrated that a pseC mutant in the O-linked pathway accumulated the product of pglF in the N-linked pathway, analyses of transformation frequencies and glycosylation statuses of N-glycosylated proteins indicated a partial suppression of pglF by pseC
biosynthesis, Bacterial Proteins, Campylobacter jejuni, glycosylation
Structure type: monomer
Location inside paper: p.6731, fig.1
Trivial name: CMP-pseudaminic acid
Compound class: nucleoside monophosphate sugar
Contained glycoepitopes: IEDB_141494,IEDB_167475,IEDB_838988
Methods: PCR, serological methods, genetic methods
Biological activity: serological data
Enzymes that release or process the structure: PseH,G,I and F
Biosynthesis and genetic data: genetic data
Related record ID(s): 21566, 21963, 21964, 21966, 21967, 25548
NCBI Taxonomy refs (TaxIDs): 197
Show glycosyltransferases
There is only one chemically distinct structure:
Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Associated disease: infection due to Helicobacter pylori [ICD11:
XN3DY 
];
infection due to Campylobacter jejuni [ICD11:
XN4Q5 
]
NCBI PubMed ID: 19882127Publisher: Totowa, NJ: Humana Press
Editors: Holst O, Walker JM, Beck A
Institutions: Institute for Biological Sciences, National Research Council Canada, Ottawa, Ontario, Canada
Glycomics which is the study of saccharides and genes responsible for their formation requires the continuous development of rapid and sensitive methods for the identification of glycan structures. It involves glycoanalysis which relies upon the development of methods for determining the structure and interactions of carbohydrates. For the application of functional glycomics to microbial virulence, carbohydrates and their associated metabolic and carbohydrate processing enzymes and respective genes can be identified and exploited as targets for drug discovery, glyco-engineering, vaccine design, and detection and diagnosis of diseases. Glycomics also encompasses the detailed understanding of carbohydrate-protein interactions and this knowledge can be applied to research efforts focused toward the development of vaccines and immunological therapies to alleviate infectious diseases.
NMR, polysaccharides, structural analysis, molecular modeling, HR-MAS, Glycomics, glycans, glycoanalysis, protein–carbohydrate interactions
Structure type: monomer
Location inside paper: p.159, fig.11.4, 4
Trivial name: CMP-pseudaminic acid
Compound class: nucleoside monophosphate sugar
Contained glycoepitopes: IEDB_141494,IEDB_167475,IEDB_838988
Methods: NMR
Enzymes that release or process the structure: PseC,PseH,PseG,PseI,PseF
Related record ID(s): 21965, 25192, 25543, 25544, 25545, 25546, 25547
NCBI Taxonomy refs (TaxIDs): 210,
197
Show glycosyltransferases
There is only one chemically distinct structure: