Taxonomic group: bacteria / Firmicutes
(Phylum: Firmicutes)
Associated disease: infection due to Lactobacillus acidophilus [ICD11:
XM0EB5 
]
The structure was elucidated in this paperNCBI PubMed ID: 29466981Publication DOI: 10.1186/s12934-018-0877-zJournal NLM ID: 101139812Publisher: London: BioMed Central
Correspondence: nehalmohammed83

gmail.com; lamia.youssif

pharm.tanta.edu.eg
Institutions: Biopharmacetical Product Research Department, Genetic Engineering and Biotechnology Research Institute, City of Scientific Research and Technology Applications, New Borg El-Arab City, 21934, Alexandria, Egypt, Department of Pharmaceutical Microbiology, Faculty of Pharmacy, Tanta University, Tanta, 31527, Egypt, Department of Pharmacognosy, Faculty of Pharmacy, Alexandria University, Alexandria, Egypt
BACKGROUND: The direct link between inflammatory bowel diseases and colorectal cancer is well documented. Previous studies have reported that some lactic acid bacterial strains could inhibit colon cancer progression however; the exact molecules involved have not yet been identified. So, in the current study, we illustrated the tumor suppressive effects of the newly identified Lactobacillus acidophilus DSMZ 20079 cell-free pentasaccharide against colon cancer cells. The chemical structure of the purified pentasaccharide was investigated by MALDI-TOF mass spectrum, 1D and 2D Nuclear Magnetic Resonance (NMR). The anticancer potentiality of the purified pentasaccharide against both Human colon cancer (CaCo-2) and Human breast cancer (MCF7) cell lines with its safety usage pattern were evaluated using cytotoxicity, annexin V quantification and BrdU incorporation assays. Also, the immunomodulatory effects of the identified compound were quantified on both LPS-induced PBMC cell model and cancer cells with monitoring the immunophenotyping of T and dendritic cell surface marker. At molecular level, the alteration in gene expression of both inflammatory and apoptotic pathways were quantified upon pentasaccharide-cellular treatment by RTqPCR. RESULTS: The obtained data of the spectroscopic analysis, confirmed the structure of the newly extracted pentasaccharide; (LA-EPS-20079) to be: α-D-Glc(1→2)][α-L-Fuc(1→4)]α-D-GlcA(1→2)α-D-GlcA(1→2)α-D-GlcA. This pentasaccharide, recorded safe dose on normal mammalian cells ranged from 2 to 5 mg/ml with cancer cells selectivity index, ranged of 1.96-51.3. Upon CaCo-2 cell treatment with the non-toxic dose of LA-EPS-20079, the inhibition percentage in CaCo-2 cellular viability, reached 80.65 with an increase in the ratio of the apoptotic cells in sub-G0/G1 cell cycle phase. Also, this pentasaccharide showed potentialities to up-regulate the expression of IKbα, P53 and TGF genes. CONCLUSION: The anticancer potentialities of LA-EPS-20079 oligosaccharides against human colon cancer represented through its regulatory effects on both apoptotic and NF-kappa B inflammatory pathways.
Oligosaccharides, exopolysaccharide, LAB, Colon cancer, NFkB pathway, T cells immunophenotyping
Structure type: oligomer
Location inside paper: abstract, fig.1, table 3, LA-EPS-20079
Trivial name: LA-EPS-20079
Compound class: EPS
Contained glycoepitopes: IEDB_115136,IEDB_136045,IEDB_140630,IEDB_142488,IEDB_142489,IEDB_144562,IEDB_144998,IEDB_146664,IEDB_152214,IEDB_174333,IEDB_983931,SB_192,SB_86
Methods: 13C NMR, 1H NMR, NMR-2D, PCR, ELISA, statistical analysis, computer analysis with CASPER, MALDI-TOF/TOF MS, cytotoxicity assay, anticancer activity in vitro assay
Biological activity: By comparing the treatment of IC50 values (2.61 mg/ml to 0.68 μg/ml), on noncancerous cells with that on the cancer cells (1.336 mg/ml); LA-EPS-20079, exhibited significant cancer cell selectivity index, ranged from 51.3 to 1.96.
Comments, role: repeating unit of EPS
NCBI Taxonomy refs (TaxIDs): 1423717Reference(s) to other database(s): GTC:G28906FU
Show glycosyltransferases
NMR conditions: in DMSO-d6 at 343 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
2,2,2 aDGlcp 96.00 72.15 74.28 71.29 72.85 62.22
2,2,4 aLFucp 100.28 68.99 69.96 72.52 68.05 16.24
2,2 aDGlcpA 95.39 76.03 70.36 77.96 71.58 174.12
2 aDGlcpA 96. 75.84 71.53 72.16 72.62 176.15
aDGlcpA 92.18 76.03 71.99 72.85 72.15 176.19
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
2,2,2 aDGlcp 4.68 3.53 3.73 3.43 3.99 3.73-3.83
2,2,4 aLFucp 4.55 3.78 3.80 3.78 4.19 1.27
2,2 aDGlcpA 5.08 3.73 4.12 3.73 4.18 -
2 aDGlcpA 5.14 3.67 3.91 3.56 4.18 -
aDGlcpA 5.21 3.63 3.80 3.55 4.18 -
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
2,2,2 aDGlcp 96.00/4.68 72.15/3.53 74.28/3.73 71.29/3.43 72.85/3.99 62.22/3.73-3.83
2,2,4 aLFucp 100.28/4.55 68.99/3.78 69.96/3.80 72.52/3.78 68.05/4.19 16.24/1.27
2,2 aDGlcpA 95.39/5.08 76.03/3.73 70.36/4.12 77.96/3.73 71.58/4.18
2 aDGlcpA 96./5.14 75.84/3.67 71.53/3.91 72.16/3.56 72.62/4.18
aDGlcpA 92.18/5.21 76.03/3.63 71.99/3.80 72.85/3.55 72.15/4.18
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
2,2,2 | aDGlcp | 4.68 | 3.53 | 3.73 | 3.43 | 3.99 | 3.73 3.83 |
2,2,4 | aLFucp | 4.55 | 3.78 | 3.80 | 3.78 | 4.19 | 1.27 |
2,2 | aDGlcpA | 5.08 | 3.73 | 4.12 | 3.73 | 4.18 |
|
2 | aDGlcpA | 5.14 | 3.67 | 3.91 | 3.56 | 4.18 |
|
| aDGlcpA | 5.21 | 3.63 | 3.80 | 3.55 | 4.18 |
|
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
2,2,2 | aDGlcp | 96.00 | 72.15 | 74.28 | 71.29 | 72.85 | 62.22 |
2,2,4 | aLFucp | 100.28 | 68.99 | 69.96 | 72.52 | 68.05 | 16.24 |
2,2 | aDGlcpA | 95.39 | 76.03 | 70.36 | 77.96 | 71.58 | 174.12 |
2 | aDGlcpA | 96. | 75.84 | 71.53 | 72.16 | 72.62 | 176.15 |
| aDGlcpA | 92.18 | 76.03 | 71.99 | 72.85 | 72.15 | 176.19 |
|
There is only one chemically distinct structure: