CSDB: Search results

Found 1 organism. Displayed organism 1
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1. (Organism ID: 153)

Escherichia coli O7

(NCBI TaxID 2162916, species name lookup)

Taxonomic group: bacteria
Phylum: Proteobacteria

The following compound(s) are assigned to this organism:

Compound ID: 274

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Structure type: suggested polymer biological repeating unit
Compound class: O-polysaccharide, core oligosaccharide, O-antigen
Reference(s) to other database(s): GTC:G47971KQ, GlycomeDB:27141

Journal of Biological Chemistry 1999, "The activity of a putative polyisoprenol-linked sugar translocase (Wzx) involved in Escherichia coli O antigen assembly is independent of the chemical structure of the O repeat"
CSDB ID 2162 (all data & tools)

Proceedings of the National Academy of Sciences of the USA 2005, "Engineering N-linked protein glycosylation with diverse O antigen lipopolysaccharide structures in Escherichia coli"
CSDB ID 10463 (all data & tools)

Biochemistry (Moscow) 1994, "The structure of lipopolysaccharides of gram-negative bacteria. III. The structure of O-antigens: A review"
CSDB ID 108701 (all data & tools)

Carbohydrate Research 1984, "Structural studies of the O-specific side chain of the lipopolysaccharide from Escherichia coli O:7"
CSDB ID 114155 (all data & tools)

Carbohydrate Research 1992, "The structure of glycerol teichoic acid-like O-specific polysaccharide of Hafnia alvei 1205"
CSDB ID 2719 (all data & tools)

Carbohydrate Research 1992, "Computer-assisted analysis of the structure of regular branched polysaccharides containing 2,3-disubstituted rhamnopyranose and mannopyranose residues on the basis of 13C NMR"
CSDB ID 116994 (all data & tools)

FEMS Microbiology Reviews 2006, "The structures of Escherichia coli O-polysaccharide antigens"
CSDB ID 20641 (all data & tools)

FEMS Microbiology Reviews 2008, "Structure and genetics of Shigella O antigens"
CSDB ID 23054 (all data & tools)

Journal of Bacteriology 2014, "Diversity of O-antigen repeat unit structures can account for the substantial sequence variation of Wzx translocases"
CSDB ID 30268 (all data & tools)

Future Microbiology 2016, "The first sugar of the repeat units is essential for the Wzy polymerase activity and elongation of the O-antigen lipopolysaccharide"
CSDB ID 11786 (all data & tools)

Russian Chemical Reviews = Uspekhi Khimii 2019, "Chemical methods for selective cleavage of glycosidic linkages in structural analysis of bacterial polysaccharides"
CSDB ID 1385 (all data & tools)

FEMS Microbiology Reviews 2020, "Structure and genetics of Escherichia coli O antigens"
CSDB ID 1508 (all data & tools)

Carbohydrate Polymers 2021, "High efficiency biosynthesis of O-polysaccharide-based vaccines against extraintestinal pathogenic Escherichia coli"
CSDB ID 10871 (all data & tools)

Compound ID: 4438

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Compound ID: 7331

a-D-Glcp-(1-P Show graphically

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Structure type: monomer
Trivial name: α-D-glucose-1-phosphate
Reference(s) to other database(s): GlycomeDB:123

Journal of Bacteriology 2007, "Biochemical characterization of dTDP-D-Qui4N and dTDP-D-Qui4NAc biosynthetic pathways in Shigella dysenteriae type 7 and Escherichia coli O7"
CSDB ID 21420 (all data & tools)
Compound ID: 6961

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Structure type: monomer
Trivial name: dTDP-α-D-glucose, dTDP-α-D-glucopyranose, dTDP-Glc

Journal of Bacteriology 2007, "Biochemical characterization of dTDP-D-Qui4N and dTDP-D-Qui4NAc biosynthetic pathways in Shigella dysenteriae type 7 and Escherichia coli O7"
CSDB ID 21689 (all data & tools)
Compound ID: 1142

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Structure type: monomer
Trivial name: dTDP-6-deoxy-D-xylohex-4-ulose, dTDP-4-keto-6-deoxy-α-D-glucose, dTDP-6-dideoxy-xylo-hexos-4-ulose, dTDP-6-deoxy-α-D-xylo-hex-4-ulose, dTDP-4-oxo-6-deoxy-α-D-glucose, dTDP-6-deoxy-D-xylo-hex-4-ulopyranose, dTDP-4-keto-6-deoxy-D-glucose, dTDP-4-keto-6-deoxyglucose
Compound class: nucleoside diphosphate sugar

Journal of Bacteriology 2007, "Biochemical characterization of dTDP-D-Qui4N and dTDP-D-Qui4NAc biosynthetic pathways in Shigella dysenteriae type 7 and Escherichia coli O7"
CSDB ID 21690 (all data & tools)
Compound ID: 7332

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Structure type: monomer
Trivial name: dTDP-4-amino-4,6-dideoxy-α-D-glucose, dTDP-viosamine

Journal of Bacteriology 2007, "Biochemical characterization of dTDP-D-Qui4N and dTDP-D-Qui4NAc biosynthetic pathways in Shigella dysenteriae type 7 and Escherichia coli O7"
CSDB ID 21691 (all data & tools)
Compound ID: 7333

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Structure type: monomer
Trivial name: dTDP-4-acetamido-4,6-dideoxy-α-D-glucose, dTDP-N-acetylviosamine

Journal of Bacteriology 2007, "Biochemical characterization of dTDP-D-Qui4N and dTDP-D-Qui4NAc biosynthetic pathways in Shigella dysenteriae type 7 and Escherichia coli O7"
CSDB ID 21692 (all data & tools)
Compound ID: 8397

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Structure type: suggested polymer biological repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G32754QY, GlycomeDB:37262

Small 2008, "Recombinant glycans on an S-layer self-assembly protein: a new dimension for nanopatterned biomaterials"
CSDB ID 23640 (all data & tools)
Compound ID: 11539

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Structure type: fragment of a bigger structure
Trivial name: type 1 chain
Reference(s) to other database(s): GTC:G04616ST

Frontiers in Immunology 2014, "Crossroads between Bacterial and Mammalian Glycosyltransferases"
CSDB ID 30210 (all data & tools)
Compound ID: 13727

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Structure type: oligomer
Compound class: O-polysaccharide

Russian Chemical Reviews = Uspekhi Khimii 2019, "Chemical methods for selective cleavage of glycosidic linkages in structural analysis of bacterial polysaccharides"
CSDB ID 1386 (all data & tools)
Compound ID: 13729

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Structure type: oligomer
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G31442XA

Russian Chemical Reviews = Uspekhi Khimii 2019, "Chemical methods for selective cleavage of glycosidic linkages in structural analysis of bacterial polysaccharides"
CSDB ID 1387 (all data & tools)

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