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Sigida EN, Kuzina MS, Kokoulin MS, Ibrahim IM, Grinev VS, Konnova SA, Fedonenko YP
Structure of the O-polysaccharide from the moderately halophilic bacterium Halomonas fontilapidosi KR26
Carbohydrate Research 536 (2024)
ID 109019
Halomonas fontilapidosi KR26
(Ancestor NCBI TaxID 616675,
species name lookup)
Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
The structure was elucidated in this paperNCBI PubMed ID: 38211449Publication DOI: 10.1016/j.carres.2023.109019Journal NLM ID: 0043535Publisher: Elsevier
Correspondence: Sigida EN <si_elena

mail.ru>
Institutions: Institute of Biochemistry and Physiology of Plants and Microorganisms, Saratov Scientific Centre of the Russian Academy of Sciences (IBPPM RAS), Saratov, Russia, G.B. Elyakov Pacific Institute of Bioorganic Chemistry, Far Eastern Branch, Russian Academy of Sciences, Vladivostok, Russia, Department of Agricultural Microbiology, Faculty of Agriculture, Fayoum University, Fayoum, Egypt, Chernyshevsky Saratov State University, Saratov, Russia
Lipopolysaccharide was obtained from the aerobic moderately halophilic bacterium Halomonas fontilapidosi KR26. The O-polysaccharide was isolated by mild acid degradation of the lipopolysaccharide and was examined by chemical methods and by 1H and 13C NMR spectroscopy, including 1H,1H COSY, TOCSY, ROESY, and 1H,13C HSQC, and HMBC experiments. The following structure of the linear tetrasaccharide repeating unit was deduced. →2)-α-l-Rhap-(1→2)-α-l-Rhap-(1→3)-α-l-Rhap-(1→3)-β-d-Galp-(1→
Lipopolysaccharide, O-specific polysaccharide, bacterial polysaccharide structure, Halomonas fontilapidosi
Structure type: polymer chemical repeating unit
Location inside paper: pg. 4, chart 1, pg. 3, Table 1
Compound class: polysaccharide, rhamnogalactan
Contained glycoepitopes: IEDB_133754,IEDB_136044,IEDB_136105,IEDB_137472,IEDB_141794,IEDB_190606,IEDB_225177,IEDB_885823,SB_165,SB_166,SB_187,SB_195,SB_7,SB_88
Methods: 13C NMR, 1H NMR, NMR-2D, DNA techniques, acid hydrolysis, GLC, electrophoresis, extraction, acetylation, reduction, precipitation, centrifugation, refractometry, staining
NCBI Taxonomy refs (TaxIDs): 616675Reference(s) to other database(s): GenDB:OQ983906.1
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NMR conditions: in D2O / TSP at 303 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
3,3,2 aLRhap 102.3 81.0 71.2 73.5 70.3 17.7
3,3 aLRhap 101.9 79.4 71.1 73.3 70.3 17.7
3 aLRhap 103.3 71.1 78.7 72.8 70.3 17.7
bDGalp 105.8 71.7 81.4 69.5 76.1 61.9
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
3,3,2 aLRhap 5.30 4.20 3.88 3.50 3.73 1.27
3,3 aLRhap 5.21 4.07 3.95 3.50 3.83 1.31
3 aLRhap 5.03 4.14 3.91 3.57 3.86 1.29
bDGalp 4.60 3.72 3.72 4.01 3.70 3.72-3.75
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
3,3,2 aLRhap 102.3/5.30 81.0/4.20 71.2/3.88 73.5/3.50 70.3/3.73 17.7/1.27
3,3 aLRhap 101.9/5.21 79.4/4.07 71.1/3.95 73.3/3.50 70.3/3.83 17.7/1.31
3 aLRhap 103.3/5.03 71.1/4.14 78.7/3.91 72.8/3.57 70.3/3.86 17.7/1.29
bDGalp 105.8/4.60 71.7/3.72 81.4/3.72 69.5/4.01 76.1/3.70 61.9/3.72-3.75
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
3,3,2 | aLRhap | 5.30 | 4.20 | 3.88 | 3.50 | 3.73 | 1.27 |
3,3 | aLRhap | 5.21 | 4.07 | 3.95 | 3.50 | 3.83 | 1.31 |
3 | aLRhap | 5.03 | 4.14 | 3.91 | 3.57 | 3.86 | 1.29 |
| bDGalp | 4.60 | 3.72 | 3.72 | 4.01 | 3.70 | 3.72 3.75 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
3,3,2 | aLRhap | 102.3 | 81.0 | 71.2 | 73.5 | 70.3 | 17.7 |
3,3 | aLRhap | 101.9 | 79.4 | 71.1 | 73.3 | 70.3 | 17.7 |
3 | aLRhap | 103.3 | 71.1 | 78.7 | 72.8 | 70.3 | 17.7 |
| bDGalp | 105.8 | 71.7 | 81.4 | 69.5 | 76.1 | 61.9 |
|
There is only one chemically distinct structure:
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Liu J, Wang X, Pu H, Liu S, Kan J, Jin C
Recent advances in endophytic exopolysaccharides: Production, structural characterization, physiological role and biological activity
Carbohydrate Polymers 157 (2017)
1113-1124
a-L-Rhap-(1-6)-+
|
-2)-a-L-Rhap-(1-4)-b-D-Galp-(1-4)-b-D-Galp-(1-4)-b-D-Galp-(1-4)-b-D-Galp-(1- |
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Fusarium solani SD5
(previously named: Fusisporium solani SD5, Neocosmospora solani SD5)
(Ancestor NCBI TaxID 169388,
species name lookup)
Taxonomic group: fungi / Ascomycota
(Phylum: Ascomycota)
NCBI PubMed ID: 27987813Publication DOI: 10.1016/j.carbpol.2016.10.084Journal NLM ID: 8307156Publisher: Elsevier
Correspondence: junliu

yzu.edu.cn
Institutions: College of Food Science and Engineering, Yangzhou University, Yangzhou, China
Endophytes are microorganisms that colonize living, internal tissues of plants without causing any immediate, overt negative effects. In recent years, both endophytic bacteria and fungi have been demonstrated to be excellent exopolysaccharides (EPS) producers. This review focuses on the recent advances in EPS produced by endophytes, including its production, isolation and purification, structural characterization, physiological role and biological activity. In general, EPS production is influenced by media components and cultivation conditions. The structures of purified EPS range from linear homopolysaccharides to highly branched heteropolysaccharides. These structurally novel EPS not only play important roles in plant-endophyte interactions; but also exhibit several biological functions, such as antioxidant, antitumor, anti-inflammatory, anti-allergic and prebiotic activities. In order to utilize endophytic EPS on an industrial scale, both yield and productivity enhancement strategies are required at several levels. Besides, the exact mechanisms on the physiological roles and biological functions of EPS should be elucidated in future.
exopolysaccharides, biological activity, Structural characterization, endophytes, physiological role
Structure type: structural motif or average structure ; n=178, 187000
Location inside paper: Table 3, PS-1
Compound class: EPS, rhamnogalactan
Contained glycoepitopes: IEDB_116886,IEDB_136044,IEDB_136105,IEDB_137472,IEDB_141794,IEDB_190606,IEDB_221845,IEDB_225177,IEDB_885823,SB_165,SB_166,SB_187,SB_195,SB_7,SB_88
Biological activity: PS-1 scavenges DPPH radical; reduces the contents of MDA and oxidized glutathione, increasing the levels of SOD, GPx and GSH in macrophage cells; protects the membrane of erythrocytes from hemolysis; inhibits Compound 48/80 induced mast cells degranulation; selectively stimulates the growth of Lactobacillus spp., inhibits the growth of Clostridium perfringens
Comments, role: complete structure was published in ref. [Mahapatra and Banerjee, 2012]
Related record ID(s): 43158, 43160, 43161, 43163, 43164
NCBI Taxonomy refs (TaxIDs): 169388Reference(s) to other database(s): GTC:G29057YX
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There is only one chemically distinct structure:
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Freitas F, Torres CAV, Reis MAM
Engineering aspects of microbial exopolysaccharide production
Bioresource Technology 245(B) (2017)
1674-1683
a-L-Rhap-(1-6)-+
|
-2)-a-L-Rhap-(1-4)-b-D-Galp-(1-4)-b-D-Galp-(1-4)-b-D-Galp-(1-4)-b-D-Galp-(1- |
Show graphically |
Fusarium solani
(previously named: Fusisporium solani, Neocosmospora solani)
(NCBI TaxID 169388,
species name lookup)
Taxonomic group: fungi / Ascomycota
(Phylum: Ascomycota)
NCBI PubMed ID: 28554522Publication DOI: 10.1016/j.biortech.2017.05.092Journal NLM ID: 9889523Publisher: Elsevier
Correspondence: amr

fct.unl.pt
Institutions: UCIBIO-REQUIMTE, Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade NOVA de Lisboa, Caparica, Portugal
Although the ability to secrete exopolysaccharides (EPS) is widespread among microorganisms, only a few bacterial (e.g. xanthan, levan, dextran) and fungal (e.g. pullulan) EPS have reached full commercialization. During the last years, other microbial EPS producers have been the subject of extensive research, including endophytes, extremophiles, microalgae and Cyanobacteria, as well as mixed microbial consortia. Those studies have demonstrated the great potential of such microbial systems to generate biopolymers with novel chemical structures and distinctive functional properties. In this work, an overview of the bioprocesses developed for EPS production by the wide diversity of reported microbial producers is presented, including their development and scale-up. Bottlenecks that currently hinder microbial EPS development are identified, along with future prospects for further advancement.
bacteria, Extremophiles, exopolysaccharide (EPS), fungi, mixed microbial consortia
Structure type: structural motif or average structure ; 190000
Location inside paper: Table 1 [Mahapatra and Banerjee (2012)]
Compound class: EPS, rhamnogalactan
Contained glycoepitopes: IEDB_116886,IEDB_136044,IEDB_136105,IEDB_137472,IEDB_141794,IEDB_190606,IEDB_221845,IEDB_225177,IEDB_885823,SB_165,SB_166,SB_187,SB_195,SB_7,SB_88
Related record ID(s): 41611, 43165, 43166, 43167, 43168, 43169, 43170, 43171, 43172, 43173, 43174, 43175, 43176, 43178, 43179, 43180, 43181
NCBI Taxonomy refs (TaxIDs): 169388Reference(s) to other database(s): GTC:G29057YX
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There is only one chemically distinct structure:
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Mahapatra S, Banerjee D
Structural elucidation and bioactivity of a novel exopolysaccharide from endophytic Fusarium solani SD5
Carbohydrate Polymers 90(1) (2012)
683-689
a-L-Rhap-(1-6)-+
|
-2)-a-L-Rhap-(1-4)-b-D-Galp-(1-4)-b-D-Galp-(1-4)-b-D-Galp-(1-4)-b-D-Galp-(1- |
Show graphically |
Fusarium solani SD5
(Ancestor NCBI TaxID 169388,
species name lookup)
Taxonomic group: fungi / Ascomycota
(Phylum: Ascomycota)
Host organism: Alstonia scholaris
Organ / tissue: stem
The structure was elucidated in this paperNCBI PubMed ID: 24751093Publication DOI: 10.1016/j.carbpol.2012.05.097Journal NLM ID: 8307156Publisher: Elsevier
Correspondence: Banerjee D <debu33

gmail.com>
Institutions: Microbiology Laboratory, Department of Botany and Forestry, Vidyasagar University, Midnapore, India
A bioactive exopolysaccharide [EPS (PS-I)], having Mw ~187000 Da was produced by submerged culture of an endophytic fungus Fusarium solani SD5. Structural elucidation of the EPS (PS-I) was carried out by a series of experiments. Result indicates the presence of terminal α-l-rhamnopyranosyl, (1→2)-α-l-rhamnopyranosyl, (1→4)-β-D-galactopyranosyl, (1→4,6)-β-D-galactopyranosyl moieties in a molar ratio of nearly 1:1:3:1. TEM image showed fibril structure of the EPS with a diameter of approximately 1 nm. Melting point range of the EPS was found 172-178 °C. The isolated PS-I exhibit in vitro anti inflammatory and anti allergic activity. EPS (1000 μg/ml) protects 55% erythrocytes from hypotonic solution induced membrane lysis. Compound 48/80 induced mast cell degranulation was also protected by 56% with 100 μg/ml EPS.
NMR, exopolysaccharide, GLC-MS, anti allergic activity, anti inflammatory activity, endophytic Fusarium solani SD5
Structure type: structural motif or average structure ; 187000
Location inside paper: p.688, PS-I, table 2
Compound class: EPS, O-polysaccharide, rhamnogalactan
Contained glycoepitopes: IEDB_116886,IEDB_136044,IEDB_136105,IEDB_137472,IEDB_141794,IEDB_190606,IEDB_221845,IEDB_225177,IEDB_885823,SB_165,SB_166,SB_187,SB_195,SB_7,SB_88
Methods: 13C NMR, 1H NMR, methylation, GLC-MS, acid hydrolysis, GLC, biological assays, paper chromatography, GPC, extraction, optical rotation measurement, acetylation, cell growth, melting point determination, phenol-sulfuric acid assay, SEM, TEM, Lowry method
Biological activity: PS-I provided significant membrane protection against hyposaline induced lyses of erythrocytes and the result was comparable with known standard drug indomethacin; the isolated PS-I inhibited the Compound 48/80 mediated mast cells degranulation in a dose dependent way
NCBI Taxonomy refs (TaxIDs): 169388Reference(s) to other database(s): GTC:G29057YX
Show glycosyltransferases
NMR conditions: in D2O at 300 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
4,4,4,4 aLRhap 100.8 78.1 70.3 73.2 69.4 17.4
4,4,4 bDGalp 104.3 71.3 73.2 74.8 76.1 60.9
4,4 bDGalp 104.3 71.3 73.2 74.8 76.1 60.9
4 bDGalp 104.3 71.3 73.2 74.8 76.1 60.9
6 aLRhap 100.3 71.2 71.8 74.3 74.8 16.7
bDGalp 104.3 71.3 72.7 76.2 75.1 67.4
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
4,4,4,4 aLRhap 5.20 4.01 3.78 3.56 3.87 1.29
4,4,4 bDGalp 4.61 3.43 3.57 3.93 3.66 3.67-3.72
4,4 bDGalp 4.61 3.43 3.57 3.93 3.66 3.67-3.72
4 bDGalp 4.61 3.43 3.57 3.93 3.66 3.67-3.72
6 aLRhap 5.10 3.93 3.81 3.54 3.89 1.27
bDGalp 4.61 3.44 3.51 3.91 3.69 3.76-4.17
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
4,4,4,4 aLRhap 100.8/5.20 78.1/4.01 70.3/3.78 73.2/3.56 69.4/3.87 17.4/1.29
4,4,4 bDGalp 104.3/4.61 71.3/3.43 73.2/3.57 74.8/3.93 76.1/3.66 60.9/3.67-3.72
4,4 bDGalp 104.3/4.61 71.3/3.43 73.2/3.57 74.8/3.93 76.1/3.66 60.9/3.67-3.72
4 bDGalp 104.3/4.61 71.3/3.43 73.2/3.57 74.8/3.93 76.1/3.66 60.9/3.67-3.72
6 aLRhap 100.3/5.10 71.2/3.93 71.8/3.81 74.3/3.54 74.8/3.89 16.7/1.27
bDGalp 104.3/4.61 71.3/3.44 72.7/3.51 76.2/3.91 75.1/3.69 67.4/3.76-4.17
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
4,4,4,4 | aLRhap | 5.20 | 4.01 | 3.78 | 3.56 | 3.87 | 1.29 |
4,4,4 | bDGalp | 4.61 | 3.43 | 3.57 | 3.93 | 3.66 | 3.67 3.72 |
4,4 | bDGalp | 4.61 | 3.43 | 3.57 | 3.93 | 3.66 | 3.67 3.72 |
4 | bDGalp | 4.61 | 3.43 | 3.57 | 3.93 | 3.66 | 3.67 3.72 |
6 | aLRhap | 5.10 | 3.93 | 3.81 | 3.54 | 3.89 | 1.27 |
| bDGalp | 4.61 | 3.44 | 3.51 | 3.91 | 3.69 | 3.76 4.17 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
4,4,4,4 | aLRhap | 100.8 | 78.1 | 70.3 | 73.2 | 69.4 | 17.4 |
4,4,4 | bDGalp | 104.3 | 71.3 | 73.2 | 74.8 | 76.1 | 60.9 |
4,4 | bDGalp | 104.3 | 71.3 | 73.2 | 74.8 | 76.1 | 60.9 |
4 | bDGalp | 104.3 | 71.3 | 73.2 | 74.8 | 76.1 | 60.9 |
6 | aLRhap | 100.3 | 71.2 | 71.8 | 74.3 | 74.8 | 16.7 |
| bDGalp | 104.3 | 71.3 | 72.7 | 76.2 | 75.1 | 67.4 |
|
There is only one chemically distinct structure:
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