Taxonomic group: bacteria / Actinobacteria
(Phylum: Actinobacteria)
The structure was elucidated in this paperPublication DOI: 10.1139/v92-336Journal NLM ID: 0372705Publisher: National Research Council of Canada Canada
Institutions: Institute for Biological Sciences, National Research Council of Canada, Ottawa, Ontario, Canada
The specific capsular polysaccharide produced by Rhodococcus equi serotype 3 was found to be a high-molecularweight acidic polymer composed of D-glucose, D-galactose, D-glucuronic acid, 4-O-[(S)-1-carboxyethyll-D-mannose, and pyruvic acid in equal molar proportions. Structural analysis, employing a combination of chemical and nuclear magnetic resonance techniques, established that the polysaccharide is composed of linear repeating tetrasaccharide units [structure], in which (R)-1-carboxyethylidene groups bridge the O-2 and O-3 positions of the β-D-glucuronic acid residues. The 1H and 13C NMR resonances of the native and depyruvulated serotype 3 polysaccharides were fully assigned by homo- and heteronuclear chemical shift correlation methods. The absolute configurations of the lactate-substituted mannopyranosyl residues and the pyruvate acetals were determined from 1H-1H NOE measurements on the intact polysaccharide. Unequivocal determination of the absolute chirality of the 4-O-[(S)-1-carboxyethyll-β-D-mannopyranoseresidues was achieved by 1H-1H NOE measurements on an acetylated lactone derivative of the glycose.
Structure type: polymer chemical repeating unit
Location inside paper: depyruvated CPS, Table 5
Compound class: depyruvated CPS
Contained glycoepitopes: IEDB_115136,IEDB_136044,IEDB_137472,IEDB_137485,IEDB_140630,IEDB_141794,IEDB_142487,IEDB_142488,IEDB_144983,IEDB_146664,IEDB_152206,IEDB_190606,IEDB_423153,IEDB_983930,IEDB_983931,SB_165,SB_166,SB_187,SB_192,SB_195,SB_44,SB_6,SB_7,SB_72,SB_88
Methods: 13C NMR, 1H NMR, NOE, EI-MS, methylation, periodate oxidation, GLC-MS
Comments, role: depyruvated CPS
Related record ID(s): 21257
NCBI Taxonomy refs (TaxIDs): 43767
Show glycosyltransferases
NMR conditions: in D2O; pH 6.2 at 335 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
4,4,3 bDGlcp 99.83 74.40 75.73 80.28 76.14 62.14
4,4,4 lSLac 174.70-178.60 77.86 19.12
4,4 bDManp 101.20 68.80 79.65 78.08 76.22 62.14
4 bDGlcpA 104.60 74.50 75.50 81.50 76.00 174.70-178.60
bDGalp 104.30 72.72 75.92 78.28 73.72 61.90
1H NMR data: present in publication
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
4,4,3 | bDGlcp | 99.83 | 74.40 | 75.73 | 80.28 | 76.14 | 62.14 |
4,4,4 | lSLac | 174.70 178.60 | 77.86 | 19.12 | |
4,4 | bDManp | 101.20 | 68.80 | 79.65 | 78.08 | 76.22 | 62.14 |
4 | bDGlcpA | 104.60 | 74.50 | 75.50 | 81.50 | 76.00 | 174.70 178.60 |
| bDGalp | 104.30 | 72.72 | 75.92 | 78.28 | 73.72 | 61.90 |
|
There is only one chemically distinct structure: