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1.
(
Organism ID:
2435)
Aeromonas
salmonicida
A449
(
Ancestor NCBI TaxID 645
,
species name lookup
)
Taxonomic group:
bacteria
Phylum:
Proteobacteria
The following compound(s) are assigned to this organism:
Compound ID:
4168
a-D-Glcp-(1-3)-+ | -3)-b-D-ManpNAc-(1-4)-a-L-Rhap2(75%)Ac-(1-
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Structure type:
polymer chemical repeating unit
Compound class:
O-polysaccharide, O-antigen
Reference(s) to other database(s):
GTC:G55357ZY, GlycomeDB:
27630
Rapid Communications in Mass Spectrometry
2005, "In-source fragmentation and analysis of polysaccharides by capillary electrophoresis/mass spectrometry"
CSDB ID 10094
(all data & tools)
Carbohydrate Research
2005, "Structural and serological characterization of the O-chain polysaccharide of Aeromonas salmonicida strains A449, 80204 and 80204-1"
CSDB ID 10184
(all data & tools)
BOOK: Methods in Molecular Biology; Eds.: Holst O, Walker JM, Beck A; Totowa, NJ: Humana Press
2010, "Characterization of polysaccharides using mass spectrometry for bacterial serotyping"
CSDB ID 25173
(all data & tools)
Mass Spectrometry Reviews
2010, "Structural investigation of bacterial lipopolysaccharides by mass spectrometry and tandem mass spectrometry"
CSDB ID 25529
(all data & tools)
Carbohydrate Research
2019, "Structure of the capsule and lipopolysaccharide O-antigen from the channel catfish pathogen, Aeromonas hydrophila"
CSDB ID 770
(all data & tools)
Compound ID:
7017
a-D-GlcpN-(1-7)-L-gro-a-D-manHepp-(1-2)-L-gro-a-D-manHepp-(1-3)-+ P-4)-+ P-4)-+ | | | a-D-Galp-(1-4)-b-D-GalpN-(1-4)-L-gro-a-D-manHepp-(1-6)-b-D-Glcp-(1-4)-L-gro-a-D-manHepp-(1-5)-a-Kdop-(2-6)-b-D-GlcpN-(1-6)-a-D-GlcpN-(1-P | L-gro-a-D-manHepp-(1-6)-+
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Structure type:
oligomer
Trivial name:
glycoform-OH-1
Compound class:
core oligosaccharide
Reference(s) to other database(s):
GlycomeDB:
28151
Carbohydrate Research
2006, "Structural studies of the core region of Aeromonas salmonicida subsp. salmonicida lipopolysaccharide"
CSDB ID 20814
(all data & tools)
Compound ID:
8488
a-D-GlcpN-(1-7)-L-gro-a-D-manHepp-(1-2)-L-gro-a-D-manHepp-(1-3)-+ P-4)-+ | | /Variants 0/-L-gro-a-D-manHepp-(1-6)-b-D-Glcp-(1-4)-L-gro-a-D-manHepp-(1-5)-a-Kdop-(2--/lipid A/ | L-gro-a-D-manHepp-(1-6)-+ /Variants 0/ is: a-D-Galp-(1-4)-b-D-GalpNAc-(1-4)- OR (exclusively) a-D-Galp-(1-4)-
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Structure type:
oligomer
Aglycon:
lipid A
Compound class:
LPS
Journal of Bacteriology
2009, "Genetics and proteomics of Aeromonas salmonicida lipopolysaccharide core biosynthesis"
CSDB ID 23724
(all data & tools)
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