Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Host organism: Homo sapiens
Associated disease: diarrhea [ICD11:
ME05.1 
, ICD11:
SA55 
];
infection due to Escherichia coli [ICD11:
XN6P4 
]
The structure was elucidated in this paperNCBI PubMed ID: 21215391Publication DOI: 10.1016/j.carres.2010.12.005Journal NLM ID: 0043535Publisher: Elsevier
Correspondence: G. Widmalm <gw

organ.su.se>
Institutions: Department of Organic Chemistry, Arrhenius Laboratory, Stockholm University, Stockholm, Sweden
The structure of the O-antigen polysaccharide (PS) from Escherichia coli O175 has been elucidated. Component analysis together with (1)H and (13)C NMR spectroscopy experiments were used to determine the structure. Inter-residue correlations were determined by (1)H,(1)H-NOESY, and (1)H,(13)C-heteronuclear multiple-bond correlation experiments. The PS is composed of pentasaccharide repeating units with the following structure: →2)-α-D-Glcp-(1→4)-α-D-GlcpA-(1→3)-α-D-Manp-(1→2)-α-D-Manp-(1→3)-β-D-GalpNAc-(1→. Cross-peaks of low intensity from an α-linked glucopyranosyl residue were present in the (1)H,(1)H-TOCSY NMR spectra. The α-D-Glcp residue is suggested to originate from the terminal part of the polysaccharide and consequently the biological repeating unit has a 3-substituted N-acetyl-D-galactosamine residue at its reducing end. The repeating unit of the E. coli O175 O-antigen is similar to those from E. coli O22 and O83, both of which carry an α-D-Glcp-(1→4)-D-GlcpA structural element, thereby explaining the reported cross-reactivities between the strains.
Lipopolysaccharide, NMR, Escherichia coli, biological repeating unit
Structure type: polymer biological repeating unit
Location inside paper: abstract, p.450
Compound class: O-polysaccharide, O-antigen
Contained glycoepitopes: IEDB_115136,IEDB_130648,IEDB_130701,IEDB_136104,IEDB_137473,IEDB_140630,IEDB_142488,IEDB_143632,IEDB_144983,IEDB_144998,IEDB_146664,IEDB_152206,IEDB_983930,IEDB_983931,SB_136,SB_192,SB_196,SB_44,SB_67,SB_72
Methods: 13C NMR, 1H NMR, NMR-2D, sugar analysis, acid hydrolysis, GLC, NMR-1D
Related record ID(s): 26493, 26494
NCBI Taxonomy refs (TaxIDs): 2072459Reference(s) to other database(s): GTC:G60907OD
Show glycosyltransferases
NMR conditions: in D2O at 228 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
3,2,3,4 aDGlcp 98.93 81.36 72.49 70.62 72.41 61.12
3,2,3 aDGlcpA 101.03 72.33 74.43 77.98 73.94 176.17
3,2 aDManp 103.03 70.66 78.86 67.35 74.29 62.10
3 aDManp 95.64 79.85 70.94 67.52 74.29 61.92
2 Ac 175.26 23.32
bDGalpN 103.62 51.87 75.75 64.68 75.94 62.05
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
3,2,3,4 aDGlcp 5.62 3.63 3.78 3.41 3.74 3.77-3.80
3,2,3 aDGlcpA 5.27 3.64 4.05 3.82 4.14 -
3,2 aDManp 5.04 4.23 3.92 3.83 3.82 3.74-3.90
3 aDManp 5.24 4.00 3.81 3.72 3.55 3.80-3.86
2 Ac - 2.06
bDGalpN 4.76 4.04 3.86 4.16 3.67 3.77-3.87
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
3,2,3,4 aDGlcp 98.93/5.62 81.36/3.63 72.49/3.78 70.62/3.41 72.41/3.74 61.12/3.77-3.80
3,2,3 aDGlcpA 101.03/5.27 72.33/3.64 74.43/4.05 77.98/3.82 73.94/4.14
3,2 aDManp 103.03/5.04 70.66/4.23 78.86/3.92 67.35/3.83 74.29/3.82 62.10/3.74-3.90
3 aDManp 95.64/5.24 79.85/4.00 70.94/3.81 67.52/3.72 74.29/3.55 61.92/3.80-3.86
2 Ac 23.32/2.06
bDGalpN 103.62/4.76 51.87/4.04 75.75/3.86 64.68/4.16 75.94/3.67 62.05/3.77-3.87
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| 3,2,3,4 | aDGlcp | 5.62 | 3.63 | 3.78 | 3.41 | 3.74 | 3.77 3.80 |
| 3,2,3 | aDGlcpA | 5.27 | 3.64 | 4.05 | 3.82 | 4.14 |
|
| 3,2 | aDManp | 5.04 | 4.23 | 3.92 | 3.83 | 3.82 | 3.74 3.90 |
| 3 | aDManp | 5.24 | 4.00 | 3.81 | 3.72 | 3.55 | 3.80 3.86 |
| 2 | Ac |
| 2.06 | |
| | bDGalpN | 4.76 | 4.04 | 3.86 | 4.16 | 3.67 | 3.77 3.87 |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 3,2,3,4 | aDGlcp | 98.93 | 81.36 | 72.49 | 70.62 | 72.41 | 61.12 |
| 3,2,3 | aDGlcpA | 101.03 | 72.33 | 74.43 | 77.98 | 73.94 | 176.17 |
| 3,2 | aDManp | 103.03 | 70.66 | 78.86 | 67.35 | 74.29 | 62.10 |
| 3 | aDManp | 95.64 | 79.85 | 70.94 | 67.52 | 74.29 | 61.92 |
| 2 | Ac | 175.26 | 23.32 | |
| | bDGalpN | 103.62 | 51.87 | 75.75 | 64.68 | 75.94 | 62.05 |
|
There is only one chemically distinct structure: