Taxonomic group: archaea / Euryarchaeota
(Phylum: Euryarchaeota)
NCBI PubMed ID: 30711766Publication DOI: 10.1016/j.carres.2019.01.009Journal NLM ID: 0043535Publisher: Elsevier
Correspondence: M. Gintner <manuel.gintner
univie.ac.at>
Institutions: AG Schmid, Institute of Organic Chemistry, University of Vienna, Vienna, Austria, Faculty of Agriculture, Shizuoka University, Shizuoka, Japan
Legionaminic acid and 4-epi-legionaminic acid are 5,7-diacetamido nonulosonic acids and are assumed to play a crucial role in the virulence of Legionella pneumophila, the causative agent of Legionnaires' disease. Moreover, they are ideal target motifs for the development of vaccines and pathogen detection. Herein, we present a versatile de novo synthesis of legionaminic acid and 4-epi-legionaminic acid. Starting from simple d-serine, the C9-backbone is built up by two CC-bond formation reactions. First, the protected d-serine motif is elongated utilizing a highly stereoselective nitroaldol reaction to give a C6-precursor of desired d-rhamno configuration. Second, an indium-mediated allylation is employed to further elongate the carbon backbone and introduce a masked alpha-keto acid function.
nonulosonic acid, legionaminic acid, 4-epi-Legionaminic acid, Indium-mediated allylation, Nitroaldol reaction
Structure type: oligomer
Location inside paper: p.35, fig.1, structure 5
Compound class: S-layer glycan
Contained glycoepitopes: IEDB_115136,IEDB_130701,IEDB_140630,IEDB_142488,IEDB_144983,IEDB_144998,IEDB_146664,IEDB_152206,IEDB_423153,IEDB_983930,IEDB_983931,SB_192,SB_44,SB_67,SB_72
Methods: 13C NMR, 1H NMR, TLC, chemical synthesis, chemical methods, glycosylation, HR-ESI-MS
Synthetic data: chemical
Comments, role: The major glycan of HRPV-1 VP4 protein from ref. [13].
Related record ID(s): 732, 733, 1016
NCBI Taxonomy refs (TaxIDs): 634157Reference(s) to other database(s): GTC:G58941ST
Show glycosyltransferases
There is only one chemically distinct structure:
Taxonomic group: archaea / Euryarchaeota
(Phylum: Euryarchaeota)
The structure was elucidated in this paperNCBI PubMed ID: 22435790Publication DOI: 10.1111/j.1365-2958.2012.08045.xJournal NLM ID: 8712028Publisher: Blackwell Publishing
Correspondence: elina.roine
helsinki.fi
Institutions: Department of Life Sciences, Ben Gurion University of the Negev, Beersheva 84105, Israel
VP4, the major structural protein of the haloarchaeal pleomorphic virus, HRPV-1, is glycosylated. To define the glycan structure attached to this protein, oligosaccharides released by beta-elimination were analysed by mass spectrometry and nuclear magnetic resonance spectroscopy. Such analyses showed that the major VP4-derived glycan is a pentasaccharide comprising glucose, glucuronic acid, mannose, sulphated glucuronic acid and a terminal 5-N-formyl-legionaminic acid residue. This is the first observation of legionaminic acid, a sialic acid-like sugar, in an archaeal-derived glycan structure. The importance of this residue for viral infection was demonstrated upon incubation with N-acetylneuraminic acid, a similar monosaccharide. Such treatment reduced progeny virus production by half 4 h post infection. LC-ESI/MS analysis confirmed the presence of pentasaccharide precursors on two different VP4-derived peptides bearing the N-glycosylation signal, NTT. The same sites modified by the native host, Halorubrum sp. strain PV6, were also recognized by the Haloferax volcanii N-glycosylation apparatus, as determined by LC-ESI/MS of heterologously expressed VP4. Here, however, the N-linked pentasaccharide was the same as shown to decorate the S-layer glycoprotein in this species. Hence, N-glycosylation of the haloarchaeal viral protein, VP4, is host-specific. These results thus present additional examples of archaeal N-glycosylation diversity and show the ability of Archaea to modify heterologously expressed proteins.
glycosylation, N-acetylneuraminic acid, N-linked, glycoprotein, virus, S-layer glycan, archaea, Haloferax volcanii
Structure type: oligomer
Location inside paper: p.582, p.583, fig.4B
Trivial name: VP4 glycan
Compound class: S-layer glycan
Contained glycoepitopes: IEDB_115136,IEDB_130701,IEDB_140630,IEDB_144983,IEDB_152206,IEDB_423153,IEDB_983930,SB_44,SB_67,SB_72
Methods: 13C NMR, 1H NMR, NMR-2D, b-elimination, MALDI-TOF MS, NMR-1D, LC-ESI-MS
Comments, role: The major glycan species of HRPV-1 VP4.
NCBI Taxonomy refs (TaxIDs): 634157
Show glycosyltransferases
NMR conditions: in D2O at 296 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6 C7 C8 C9
4,4,2,4,5 Fo 166.0
4,4,2,4,7 Ac 175.6 24.2
4,4,2,4 aXLegp ? 101.4 42.0 70.1 52.5 73.7 55.7 68.4 20.4
4,4,2,2 S
4,4,2 bDGlcpA 101.0 81.5 75.4 75.1 77.5 175.8
4,4 aDManp 99.7 79.7 71.4 68.1 75.0 62.6
4 bDGlcpA 104.1 75.0 77.8 78.3 77.1 176.0
bDGlcp1N 80.9 73.3 76.7 79.8 78.2 61.6
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6 H7 H8 H9
4,4,2,4,5 Fo 8.111
4,4,2,4,7 Ac - 2.115
4,4,2,4 aXLegp - - 1.758-2.799 3.641 3.709 3.897 3.826 4.040 1.169
4,4,2,2 S
4,4,2 bDGlcpA 4.710 4.132 3.764 4.187 3.930 -
4,4 aDManp 5.491 4.164 3.825 3.823 3.661 3.79
4 bDGlcpA 4.548 3.427 3.696 3.825 3.93 -
bDGlcp1N 4.986 3.439 3.711 3.649 3.666 3.827-3.934
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6 C7/H7 C8/H8 C9/H9
4,4,2,4,5 Fo 166.0/8.111
4,4,2,4,7 Ac 24.2/2.115
4,4,2,4 aXLegp 42.0/1.758-2.799 70.1/3.641 52.5/3.709 73.7/3.897 55.7/3.826 68.4/4.040 20.4/1.169
4,4,2,2 S
4,4,2 bDGlcpA 101.0/4.710 81.5/4.132 75.4/3.764 75.1/4.187 77.5/3.930
4,4 aDManp 99.7/5.491 79.7/4.164 71.4/3.825 68.1/3.823 75.0/3.661 62.6/3.79
4 bDGlcpA 104.1/4.548 75.0/3.427 77.8/3.696 78.3/3.825 77.1/3.93
bDGlcp1N 80.9/4.986 73.3/3.439 76.7/3.711 79.8/3.649 78.2/3.666 61.6/3.827-3.934
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 | H7 | H8 | H9 |
4,4,2,4,5 | Fo | 8.111 | |
4,4,2,4,7 | Ac |
| 2.115 | |
4,4,2,4 | aXLegp |
|
| 1.758 2.799 | 3.641 | 3.709 | 3.897 | 3.826 | 4.040 | 1.169 |
4,4,2,2 | S | |
4,4,2 | bDGlcpA | 4.710 | 4.132 | 3.764 | 4.187 | 3.930 |
| |
4,4 | aDManp | 5.491 | 4.164 | 3.825 | 3.823 | 3.661 | 3.79 | |
4 | bDGlcpA | 4.548 | 3.427 | 3.696 | 3.825 | 3.93 |
| |
| bDGlcp1N | 4.986 | 3.439 | 3.711 | 3.649 | 3.666 | 3.827 3.934 | |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 | C7 | C8 | C9 |
4,4,2,4,5 | Fo | 166.0 | |
4,4,2,4,7 | Ac | 175.6 | 24.2 | |
4,4,2,4 | aXLegp | ? | 101.4 | 42.0 | 70.1 | 52.5 | 73.7 | 55.7 | 68.4 | 20.4 |
4,4,2,2 | S | |
4,4,2 | bDGlcpA | 101.0 | 81.5 | 75.4 | 75.1 | 77.5 | 175.8 | |
4,4 | aDManp | 99.7 | 79.7 | 71.4 | 68.1 | 75.0 | 62.6 | |
4 | bDGlcpA | 104.1 | 75.0 | 77.8 | 78.3 | 77.1 | 176.0 | |
| bDGlcp1N | 80.9 | 73.3 | 76.7 | 79.8 | 78.2 | 61.6 | |
|
The spectrum also has 1 signal at unknown position (not plotted). |
There is only one chemically distinct structure: