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Kuttel MM, Jackson GE, Mafata M, Ravenscroft N
Capsular polysaccharide conformations in pneumococcal serotypes 19F and 19A
Carbohydrate Research 406 (2015)
27-33
Streptococcus pneumoniae 19F
(Ancestor NCBI TaxID 1313,
species name lookup)
Taxonomic group: bacteria / Firmicutes
(Phylum: Firmicutes)
Host organism: Homo sapiens
Associated disease: pneumonia [ICD11:
CA40 
];
infection due to Streptococcus pneumoniae [ICD11:
XN3PW ]
NCBI PubMed ID: 25658063Publication DOI: 10.1016/j.carres.2014.12.013Journal NLM ID: 0043535Publisher: Elsevier
Correspondence: mkuttel
cs.uct.ac.za
Institutions: Department of Computer Science, University of Cape Town, Cape Town, South Africa
Streptococcus pneumoniae is a significant pathogen in children. Although the PCV7 pneumococcal conjugate vaccine has reduced pneumococcal disease, non-vaccine serotype 19A infection has increased, despite expectations of cross-protection from vaccine serotype 19F. Serotype 19A is included in the new PCV13 vaccine, but not in PCV10. In the solution simulations of 19F and 19A oligosaccharide chains reported here, both polysaccharides form unstructured random coils, with inflexible repeat units linked by mobile phosphodiester linkages. However, there are clear conformational differences. In the 19F repeat unit, the rhamnose residue is nearly orthogonal to the other residues, whereas 19A has residues in similar orientations. This finding is corroborated by key inter-residue distances calculated from NMR NOESY experiments. Further, 19F is predominantly in extended conformations, whereas 19A exhibits a high prevalence of tight hairpin bends. These conformational differences may account for a lack of antibody cross-protection between serotypes 19F and 19A.
molecular modelling, Streptococcus pneumoniae, vaccine, pneumococcal, cross protection
Structure type: polymer chemical repeating unit
Location inside paper: p.27
Trivial name: poly(glycosyl phosphate)
Compound class: CPS
Contained glycoepitopes: IEDB_136105,IEDB_142488,IEDB_144998,IEDB_146664,IEDB_158557,IEDB_225177,IEDB_885813,IEDB_885823,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, NMR-2D, conformation analysis, molecular modeling, MD simulation, polymer hydrodynamics
3D data: 3D data
Related record ID(s): 30800
NCBI Taxonomy refs (TaxIDs): 1313Reference(s) to other database(s): GTC:G04354CY, GlycomeDB:
15551
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There is only one chemically distinct structure:
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Kuttel MM, Jackson GE, Mafata M, Ravenscroft N
Capsular polysaccharide conformations in pneumococcal serotypes 19F and 19A
Carbohydrate Research 406 (2015)
27-33
Streptococcus pneumoniae 19A
(Ancestor NCBI TaxID 1313,
species name lookup)
Taxonomic group: bacteria / Firmicutes
(Phylum: Firmicutes)
Host organism: Homo sapiens
Associated disease: pneumonia [ICD11:
CA40 ];
infection due to Streptococcus pneumoniae [ICD11:
XN3PW ]
NCBI PubMed ID: 25658063Publication DOI: 10.1016/j.carres.2014.12.013Journal NLM ID: 0043535Publisher: Elsevier
Correspondence: mkuttel
cs.uct.ac.za
Institutions: Department of Computer Science, University of Cape Town, Cape Town, South Africa
Streptococcus pneumoniae is a significant pathogen in children. Although the PCV7 pneumococcal conjugate vaccine has reduced pneumococcal disease, non-vaccine serotype 19A infection has increased, despite expectations of cross-protection from vaccine serotype 19F. Serotype 19A is included in the new PCV13 vaccine, but not in PCV10. In the solution simulations of 19F and 19A oligosaccharide chains reported here, both polysaccharides form unstructured random coils, with inflexible repeat units linked by mobile phosphodiester linkages. However, there are clear conformational differences. In the 19F repeat unit, the rhamnose residue is nearly orthogonal to the other residues, whereas 19A has residues in similar orientations. This finding is corroborated by key inter-residue distances calculated from NMR NOESY experiments. Further, 19F is predominantly in extended conformations, whereas 19A exhibits a high prevalence of tight hairpin bends. These conformational differences may account for a lack of antibody cross-protection between serotypes 19F and 19A.
molecular modelling, Streptococcus pneumoniae, vaccine, pneumococcal, cross protection
Structure type: polymer chemical repeating unit
Location inside paper: p.27
Trivial name: poly(glycosyl phosphate)
Compound class: CPS
Contained glycoepitopes: IEDB_136105,IEDB_142488,IEDB_144998,IEDB_146664,IEDB_158539,IEDB_158556,IEDB_225177,IEDB_885813,IEDB_885823,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, NMR-2D, conformation analysis, molecular modeling, MD simulation, polymer hydrodynamics
3D data: 3D data
Related record ID(s): 30627
NCBI Taxonomy refs (TaxIDs): 1313Reference(s) to other database(s): GTC:G63397SO, GlycomeDB:
26914
Show glycosyltransferases
There is only one chemically distinct structure:
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