Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
The structure was elucidated in this paperPublication DOI: 10.1016/j.carbpol.2020.116147Journal NLM ID: 8307156Publisher: Elsevier
Correspondence: mljin

zju.edu.cn
Institutions: Key Laboratory of Animal Nutrition and Feed Science in Eastern China, Ministry of Agriculture, College of Animal Sciences, Zhejiang University, Hangzhou, China, Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Hangzhou, China
The present study aimed to unveil potential protective mechanisms of SEPS-4, a novel sulfated derivative of exopolysaccharide produced by Enterobacter cloacae Z0206, against H2O2-induced oxidative damage in murine macrophages based on proteomic approaches. SEPS-4 pre-treatment was found to be capable of alleviating H2O2-induced reduction of RAW264.7 cell viability. Two-dimensional gel electrophoresis and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry were used to evaluate proteins with significant expression alterations in H2O2-challenged RAW264.7 cells following pre-incubation with SEPS-4. Here 12 up-regulated proteins and 12 down-regulated proteins were successfully identified. Bio-informatic analysis was applied for further mechanistic studies. GO annotation and KEGG pathway enrichment analyses demonstrated that differentially expressed proteins were mainly clustered in stress-related biological processes, including metabolic process, stimulus to response, cell growth and death. Peroxiredoxin-2 and Eef1g were core modules of protein-protein interaction network. Collectively, our data indicated that SEPS-4 may exert protective effects against H2O2-induced oxidative damage via the regulation of these functional proteins and related biological processes.
animal, sulfated polysaccharide, oxidative stress, Enterobacter cloacae Z0206, Protective effects, Proteomic analysis
Structure type: polymer chemical repeating unit
Location inside paper: fig.1, SEPS-4
Trivial name: sulfated derivative SEPS-4
Compound class: EPS
Contained glycoepitopes: IEDB_115136,IEDB_136044,IEDB_136045,IEDB_136906,IEDB_137472,IEDB_140630,IEDB_141794,IEDB_142488,IEDB_142489,IEDB_144562,IEDB_146664,IEDB_151528,IEDB_151770,IEDB_152214,IEDB_174333,IEDB_190606,IEDB_423153,IEDB_983931,SB_118,SB_165,SB_166,SB_187,SB_192,SB_195,SB_7,SB_86,SB_88
Methods: 13C NMR, 1H NMR, MALDI-TOF MS, FTIR, statistical analysis, cell viability assay, proteomic analysis
Synthetic data: chemical
Comments, role: The sulfated derivative of EPS, was prepared using the chlorosulfonic acid-pyridine method. NMR data showing that the SEPS-4 was sulfated at C1 of bDGalp and aLFucp residues seems doubtful.
NCBI Taxonomy refs (TaxIDs): 550
Show glycosyltransferases
SMILES errors: -3)[S-?)]bDGalp(1-4)aLFucp(1-4)[S-?),xRPyr(2-6:2-4)aDGalp(1-4)bDGlcpA(1-3)[S-6)]bDGlcp(1-3)]aLFucp(1-4)[S-?)]bDGalp(1-:
SMILES error: unpredicted error with SMILES generation. 'aLFucp' is not in list