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1.
(
Organism ID:
3290)
Aeromonas
salmonicida
ssp. salmonicida
(
NCBI TaxID 29491
,
species name lookup
)
Taxonomic group:
bacteria
Phylum:
Proteobacteria
The following compound(s) are assigned to this organism:
Compound ID:
5353
a-D-GlcpN-(1-7)-L-gro-b-D-manHepp-(1-4)-+ | a-D-Galp-(1-4)-a-D-GalpNAc-(1-6)-a-D-Glcp-(1-4)-L-gro-a-D-manHepp-(1-2)-L-gro-a-D-manHepp-(1-3)-L-gro-a-D-manHepp-(1-6)-Kdof | L-gro-a-D-manHepp-(1-6)-+
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Structure type:
oligomer
Compound class:
LPS
Reference(s) to other database(s):
GTC:G27520ML, GlycomeDB:
5532
Carbohydrate Research
1992, "Structure of the core oligosaccharide in the lipopolysaccharide isolated from Aeromonas salmonicida ssp. salmonicida"
CSDB ID 116760
(all data & tools)
Compound ID:
8305
a-D-GlcpN-(1-7)-L-gro-a-D-manHepp-(1-4)-+ | a-D-Galp-(1-4)-a-D-GalpNAc-(1-6)-a-D-Glcp-(1-4)-L-gro-a-D-manHepp-(1-2)-L-gro-a-D-manHepp-(1-3)-L-gro-a-D-manHepp-(1-6)-Kdof-(2--/lipid A/ | L-gro-a-D-manHepp-(1-6)-+
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Structure type:
oligomer
Aglycon:
lipid A
Trivial name:
core region
Compound class:
core oligosaccharide
Reference(s) to other database(s):
GTC:G21939HD, GlycomeDB:
28417
Biochemistry (Moscow)
1993, "The structure of lipopolysaccharides of gram-negative bacteria. II. The structure of the core region"
CSDB ID 24956
(all data & tools)
Compound ID:
10689
a-D-GlcpN-(1-7)-L-gro-b-D-manHepp-(1-4)-+ | a-D-Glcp-(1-4)-a-D-GalpNAc-(1-6)-a-D-Glcp-(1-4)-L-gro-a-D-manHepp-(1-2)-L-gro-a-D-manHepp-(1-3)-L-gro-a-D-manHepp-(1-6)-Kdof | L-gro-a-D-manHepp-(1-6)-+
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Structure type:
oligomer
Compound class:
core oligosaccharide
Reference(s) to other database(s):
GTC:G26637SV
Marine Drugs
2011, "The structural diversity of carbohydrate antigens of selected Gram-negative marine bacteria"
CSDB ID 28496
(all data & tools)
Compound ID:
10690
a-D-GalpNAc-(1-7)-L-gro-a-D-manHepp-(1-2)-L-gro-a-D-manHepp-(1-?)-+ P-4)-+ | | /Variants 0/-L-gro-a-D-manHepp-(1-6)-b-D-Glcp-(1-4)-L-gro-a-D-manHepp-(1-5)-a-Kdop-(2--/lipid A/ | L-gro-a-D-manHepp-(1-6)-+ /Variants 0/ is: a-D-Galp-(1-4)-b-D-GalpNAc-(1-4)- OR (exclusively) a-D-Galp-(1-4)-
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Structure type:
oligomer
Aglycon:
lipid A
Compound class:
core oligosaccharide
Marine Drugs
2011, "The structural diversity of carbohydrate antigens of selected Gram-negative marine bacteria"
CSDB ID 28497
(all data & tools)
Compound ID:
10952
a-D-GlcpN-(1-7)-L-gro-b-D-manHepp-(1-4)-+ P-4)-+ | | a-D-Galp-(1-4)-a-D-GalpNAc-(1-6)-a-D-Glcp-(1-4)-L-gro-a-D-manHepp-(1-2)-L-gro-a-D-manHepp-(1-3)-L-gro-a-D-manHepp-(1-5)-a-Kdop-(2--/lipid A/ | L-gro-a-D-manHepp-(1-6)-+
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Structure type:
oligomer
Aglycon:
lipid A
Compound class:
core oligosaccharide
Reference(s) to other database(s):
GTC:G72436GY
European Journal of Mass Spectrometry
2004, "Characterization of the O-4 phosphorylated and O-5 substituted Kdo reducing end group and sequencing of the core oligosaccharide of Aeromonas salmonicida ssp salmonicida lipopolysaccharide using tandem mass spectrometry"
CSDB ID 8911
(all data & tools)
Compound ID:
12777
L-gro-a-D-manHepp-(1-6)-+ P-4)-+ | | a-D-GlcpN-(1-7)-L-gro-a-D-manHepp-(1-2)-L-gro-a-D-manHepp-(1-3)-L-gro-a-D-manHepp-(1-5)-a-Kdop-(2--/(2->6)lipid A/ | b-D-Glcp-(1-4)-+
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Structure type:
oligomer
Aglycon:
(2->6)lipid A
Compound class:
core oligosaccharide, LPS
Reference(s) to other database(s):
GTC:G27045FQ
International Journal of Molecular Sciences
2017, "Comparative Genomics of the Aeromonadaceae Core Oligosaccharide Biosynthetic Regions"
CSDB ID 12008
(all data & tools)
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