Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
The structure was elucidated in this paperNCBI PubMed ID: 32718600Publication DOI: 10.1016/j.carbpol.2020.116458Journal NLM ID: 8307156Publisher: Elsevier
Correspondence: acouto

qo.fcen.uba.ar
Institutions: Universidad de Buenos Aires, Facultad de Ciencias Exactas y Naturales, Departamento de Quimica Organica - Consejo Nacional de Investigaciones Cientificas y Tecnicas, Centro de Investigacion en Hidratos de Carbono (CIHIDECAR), CP 1428, Buenos Aires, Argentina, Area Quimica, Instituto de Ciencias, Universidad Nacional de General Sarmiento, J.M. Gutierrez 1150, B1613GSX, Los Polvorines, Buenos Aires, Argentina, Consejo Nacional de Investigaciones Cientificas y Tecnicas, Av. Rivadavia 1917, C1033AAJ, Buenos Aires, Argentina
Pseudomonas veronii 2E, an autochthonous bacterium isolated from sediments associated to a high-polluted watershed, produces a complex matrix of exopolymers with carbohydrates as main components. In this work, four polysaccharides were isolated from the extracellular material. The major acidic polysaccharide named EPO2, was purified and its structure was elucidated using Matrix-assisted laser desorption/ionization and Electrospray ionization mass spectrometry, Infrared spectroscopy, Nuclear magnetic resonance spectroscopy and chemical treatments. This heteropolysaccharide consists in an α(1→4) glucan substituted with N-Acetylglucosamine residues and with a branching α-D-GlcpA-(1→3)-L-Fucp disaccharide. The biosorption capacity of EPO2 and of the whole exopolysaccharide to Pb(II), Zn(II), Cu(II) and Fe(II) was evaluated. EPO2 showed a remarkable sorption capacity for Fe(II) with an efficiency of 70% and for Zn(II) 39%. When the whole exopolysaccharide fraction was tested it showed a significantly lower metal sorption ability than purified EPO2 suggesting the involvement of the distinct acidic branching disaccharide in this interaction.
LOS, exopolysaccharide, Bioremediation, Extracellular polymeric substances, Pseudomonas veronii 2E
Structure type: oligomer
Location inside paper: abstract, table 2, EPO2 fraction
Compound class: EPS
Contained glycoepitopes: IEDB_115136,IEDB_140630,IEDB_142489,IEDB_144562,IEDB_152214,SB_86
Methods: gel filtration, 13C NMR, 1H NMR, partial acid hydrolysis, GC-MS, sugar analysis, MS/MS, MALDI-TOF MS, FTIR, HPAEC-PAD, permethylation, acetylation, reduction, ESI-QTOF-MS, SEM, metal biosorption analysis
Biological activity: EPO2 showed 70% sorption capacity for Fe(II) and for Zn(II) 39%.
Comments, role: branching disaccharide structure of the EPO2 fraction
Related record ID(s): 32077
NCBI Taxonomy refs (TaxIDs): 76761Reference(s) to other database(s): GTC:G32051BL
Show glycosyltransferases
NMR conditions: in D2O
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
3 aDGlcpA 100.5 72.1 72.4 71.4 71.3 173.08
bLFucp 96.1 72.4 81.6 70.8 71.1 15.4
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
3 aDGlcpA 5.2 3.56 3.79 3.55 4.28 -
bLFucp 4.53 3.57 3.66 3.52 3.74 1.17
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
3 aDGlcpA 100.5/5.2 72.1/3.56 72.4/3.79 71.4/3.55 71.3/4.28
bLFucp 96.1/4.53 72.4/3.57 81.6/3.66 70.8/3.52 71.1/3.74 15.4/1.17
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
3 | aDGlcpA | 5.2 | 3.56 | 3.79 | 3.55 | 4.28 |
|
| bLFucp | 4.53 | 3.57 | 3.66 | 3.52 | 3.74 | 1.17 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
3 | aDGlcpA | 100.5 | 72.1 | 72.4 | 71.4 | 71.3 | 173.08 |
| bLFucp | 96.1 | 72.4 | 81.6 | 70.8 | 71.1 | 15.4 |
|
There is only one chemically distinct structure:
Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
The structure was elucidated in this paperNCBI PubMed ID: 32718600Publication DOI: 10.1016/j.carbpol.2020.116458Journal NLM ID: 8307156Publisher: Elsevier
Correspondence: acouto

qo.fcen.uba.ar
Institutions: Universidad de Buenos Aires, Facultad de Ciencias Exactas y Naturales, Departamento de Quimica Organica - Consejo Nacional de Investigaciones Cientificas y Tecnicas, Centro de Investigacion en Hidratos de Carbono (CIHIDECAR), CP 1428, Buenos Aires, Argentina, Area Quimica, Instituto de Ciencias, Universidad Nacional de General Sarmiento, J.M. Gutierrez 1150, B1613GSX, Los Polvorines, Buenos Aires, Argentina, Consejo Nacional de Investigaciones Cientificas y Tecnicas, Av. Rivadavia 1917, C1033AAJ, Buenos Aires, Argentina
Pseudomonas veronii 2E, an autochthonous bacterium isolated from sediments associated to a high-polluted watershed, produces a complex matrix of exopolymers with carbohydrates as main components. In this work, four polysaccharides were isolated from the extracellular material. The major acidic polysaccharide named EPO2, was purified and its structure was elucidated using Matrix-assisted laser desorption/ionization and Electrospray ionization mass spectrometry, Infrared spectroscopy, Nuclear magnetic resonance spectroscopy and chemical treatments. This heteropolysaccharide consists in an α(1→4) glucan substituted with N-Acetylglucosamine residues and with a branching α-D-GlcpA-(1→3)-L-Fucp disaccharide. The biosorption capacity of EPO2 and of the whole exopolysaccharide to Pb(II), Zn(II), Cu(II) and Fe(II) was evaluated. EPO2 showed a remarkable sorption capacity for Fe(II) with an efficiency of 70% and for Zn(II) 39%. When the whole exopolysaccharide fraction was tested it showed a significantly lower metal sorption ability than purified EPO2 suggesting the involvement of the distinct acidic branching disaccharide in this interaction.
LOS, exopolysaccharide, Bioremediation, Extracellular polymeric substances, Pseudomonas veronii 2E
Structure type: oligomer
Location inside paper: abstract, table 2, EPO2 fraction
Compound class: EPS
Contained glycoepitopes: IEDB_115136,IEDB_136045,IEDB_140630,IEDB_142489,IEDB_144562,IEDB_152214,IEDB_174333,SB_86
Methods: gel filtration, 13C NMR, 1H NMR, partial acid hydrolysis, GC-MS, sugar analysis, MS/MS, MALDI-TOF MS, FTIR, HPAEC-PAD, permethylation, acetylation, reduction, ESI-QTOF-MS, SEM, metal biosorption analysis
Biological activity: EPO2 showed 70% sorption capacity for Fe(II) and for Zn(II) 39%.
Comments, role: branching disaccharide structure of the EPO2 fraction; published erroneous NMR chemical shift of #_aLFucp C2 (78.2) was removed by CSDB staff
Related record ID(s): 3319
NCBI Taxonomy refs (TaxIDs): 76761Reference(s) to other database(s): GTC:G18463LN
Show glycosyltransferases
NMR conditions: in D2O
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
3 aDGlcpA 100.5 72.1 72.4 71.4 71.3 173.08
aLFucp 92.1 ? 78 71.5 66.2 15.3
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
3 aDGlcpA 5.2 3.56 3.79 3.55 4.28 -
aLFucp 5.14 3.88 3.89 3.54 4.13 1.12
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
3 aDGlcpA 100.5/5.2 72.1/3.56 72.4/3.79 71.4/3.55 71.3/4.28
aLFucp 92.1/5.14 ?/3.88 78/3.89 71.5/3.54 66.2/4.13 15.3/1.12
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
3 | aDGlcpA | 5.2 | 3.56 | 3.79 | 3.55 | 4.28 |
|
| aLFucp | 5.14 | 3.88 | 3.89 | 3.54 | 4.13 | 1.12 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
3 | aDGlcpA | 100.5 | 72.1 | 72.4 | 71.4 | 71.3 | 173.08 |
| aLFucp | 92.1 | ? | 78 | 71.5 | 66.2 | 15.3 |
|
 The spectrum also has 1 signal at unknown position (not plotted). |
There is only one chemically distinct structure: