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1. (Article ID: 3458)
De Castro C, Molinaro A, Lanzetta R, Silipo A, Parrilli M
Lipopolysaccharide structures from Agrobacterium and Rhizobiaceae species
Carbohydrate Research 343(12) (2008)
1924-1933
This review reports and discusses the structural and the biological data available for the lipopolysaccharides from the Gram-negative bacterium Agrobacterium together with those of other related Rhizobiaceae species
Lipopolysaccharide, Rhizobium, symbiosis, Agrobacterium, Tumor induction
NCBI PubMed ID: 18353297Publication DOI: 10.1016/j.carres.2008.01.036Journal NLM ID: 0043535Publisher: Elsevier
Correspondence: decastro

unina.it; molinaro

unina.it
Institutions: Department of Organic Chemistry and Biochemistry, University of Naples Federico II, Complesso Universitario Monte Sant' Angelo, Via Cinthia 4, 80126 Napoli, Italy
Methods: 13C NMR, 1H NMR, NMR-2D, MS, composition analysis, NMR-1D
The publication contains the following compound(s):
- Compound ID: 5
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G67980NV, GlycomeDB:
25177
- Compound ID: 7741
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G43823SI, GlycomeDB:
36925
- Compound ID: 7749
|
a-D-GalpA-(1-5)-+
|
a-D-GalpA-(1-4)-a-Kdop-(2-4)-+
|
a-D-GalpA-(1-4)-+ |
| |
Subst-(1-3)-a-L-Fucp-(1-4)-a-D-Manp-(1-3)-b-D-QuipNAc-(1-4)-a-Kdop-(2-6)-a-D-Galp-(1-6)-a-D-Manp-(1-5)-a-Kdop-(2--/(2->6)lipid A/
Subst = O-antigen |
Show graphically |
Structure type: oligomer
Aglycon: (2->6)lipid A
Compound class: core oligosaccharide
- Compound ID: 7753
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G05049RE, GlycomeDB:
36934
- Compound ID: 1445
Structure type: polymer chemical repeating unit
Trivial name: L-rhamnan, water-soluble EPS
Compound class: EPS, O-polysaccharide, O-antigen, polysaccharide, rhamnan
Reference(s) to other database(s): GTC:G60116ZJ, GlycomeDB:
27349
- Compound ID: 1530
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G28333MQ, GlycomeDB:
27374
- Compound ID: 7738
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G85014VU
- Compound ID: 660
Structure type: polymer chemical repeating unit
Trivial name: repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G35373OX, GlycomeDB:
25158
- Compound ID: 1770
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G50089GG, GlycomeDB:
25159, CCSD:
12534, CBank-STR:12551
- Compound ID: 2288
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G55399LS, GlycomeDB:
25360
- Compound ID: 7744
|
a-Kdop-(2-4)-+
|
b-D-GlcpA6NH2-(1-3)-b-D-Glcp-(1-4)-+ | P-4)-+
| | |
3HO2,3MePro-5-oxo-(1-3)-b-D-Quip3N-(1-2)-a-L-Rhap-(1-4)-a-D-GalpA6NH2-(1-6)-a-D-Galp-(1-5)-a-Kdop-(2-6)-b-D-GlcpN-(1-6)-a-D-GlcpN-(1-P |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
- Compound ID: 7742
Structure type: homopolymer
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G25607OL, GlycomeDB:
26285
- Compound ID: 7752
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G02622MM, GlycomeDB:
36933
- Compound ID: 7754
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G84677QL, GlycomeDB:
36935
- Compound ID: 7746
|
?%b-D-GlcpN-(1-2)-b-D-Galp-(1-4)-b-D-Galp-(1-8)-a-Kdop-(2-4)-+ P-4)-+
| |
?%a-L-Rhap-(1-2)-a-L-Rhap-(1-2)-a-L-Rhap-(1-2)-a-L-Rhap-(1-3)-a-L-Rhap-(1-3)-a-D-Manp-(1-5)-a-Kdop-(2-6)-b-D-GlcpN-(1-6)-a-D-GlcpN-(1-P |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GlycomeDB:
36929
- Compound ID: 7745
|
?%b-D-Galp-(1-8)-a-Kdop-(2-4)-+ P-4)-+
| |
?%a-D-Manp-(1-6)-a-D-Manp-(1-5)-a-Kdop-(2-6)-b-D-GlcpN-(1-6)-a-D-GlcpN-(1-P |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GlycomeDB:
27992
- Compound ID: 7737
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G48686WU, GlycomeDB:
25386
- Compound ID: 7739
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G17417PD, GlycomeDB:
36924
- Compound ID: 7740
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
- Compound ID: 1443
Structure type: homopolymer
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G24651SF, GlycomeDB:
27347
- Compound ID: 5478
|
a-D-ManpNAc-(1-2)-+
|
-3)-a-L-Rhap-(1-3)-a-L-Rhap-(1-4)-b-D-GlcpNAc-(1-3)-a-L-Rhap-(1- |
Show graphically |
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G83001VX, GlycomeDB:
6724
- Compound ID: 7743
|
a-D-Manp-(1-2)-+
|
-3)-a-L-Rhap-(1-3)-a-L-Fucp-(1-3)-a-L-Fucp-(1- |
Show graphically |
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G19308IN, GlycomeDB:
36926
- Compound ID: 7747
|
b-D-Galp-(1-8)-a-Kdop-(2-4)-+
|
a-D-Manp-(1-6)-+ | P-4)-+
| | |
a-D-Manp-(1-2)-a-D-Manp-(1-3)-a-D-Manp-(1-3)-a-D-Manp-(1-5)-a-Kdop-(2-6)-b-D-GlcpN-(1-6)-a-D-GlcpN-(1-P |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GlycomeDB:
36930
- Compound ID: 7748
|
?%a-D-GalpA3Ac-(1-7)-a-Kdop-(2-4)-+
|
a-L-Fucp-(1-4)-+ a-3dlyxHepp-ulosaric-(2-3)-a-D-GalpA-(1-3)-b-D-Glcp-(1-4)-+ | P-4)-+
| | | |
a-L-Fucp-(1-2)-b-D-Galp3(%)Ac4(%)Ac-(1-3)-a-D-GlcpN-(1-4)-b-D-GlcpA-(1-4)-a-D-GalpA-(1-3)-b-D-Glcp-(1-6)-a-D-Glcp-(1-5)-a-Kdop-(2-6)-b-D-GlcpN-(1-6)-a-D-GlcpN-(1-P |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
- Compound ID: 7750
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G28131QA, GlycomeDB:
36931
- Compound ID: 7751
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G10217NL, GlycomeDB:
36932
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2. (Article ID: 3946)
Silipo A, Molinaro A
The Diversity of the Core Oligosaccharide in Lipopolysaccharides
Book: Endotoxins: Structure, Function and Recognition (series: Subcellular Biochemistry, Part 1) (2010)
Vol. 53, Chapter 4, 69-99
Bacterial lipopolysaccharides (LPSs) are the major component of the outer membrane of Gram-negative bacteria. They have a structural role since they contribute to the cellular rigidity by increasing the strength of cell wall and mediating contacts with the external environment that can induce structural changes to allow life in different conditions. Furthermore, the low permeability of the outer membrane acts as a barrier to protect bacteria from host-derived antimicrobial compounds. Lipopolysaccharides are amphiphilic macromolecules generally comprising three defined regions distinguished by their genetics, structures and function: the lipid A, the core oligosaccharide and a polysaccharide portion, the O-chain. In some Gram-negative bacteria LPS can terminate with the core portion to form rough type LPS (R-LPS, LOS). The core oligosaccharide is an often branched and phosphorylated heterooligosaccharide with less than fifteen sugars, more conserved in the inner region, proximal to the lipid A, and often carrying non-stoichiometric substitutions leading to variation and micro-heterogeneity. The core oligosaccharide contributes to the bacterial viability and stability of the outer membrane, can assure the serological specificity and possesses antigenic properties.
core oligosaccharide, endotoxin, Gram-negative bacteria, innate immunity, glyco-conjugates
NCBI PubMed ID: 20593263Publication DOI: 10.1007/978-90-481-9078-2_4Publisher: Springer Science+Business Media B.V.
Editors: Wang X, Quinn PJ
Correspondence: molinaro

unina.it
Institutions: Dipartimento di Chimica Organica e Biochimica, Università di Napoli Federico II, Complesso Universitario Monte Santangelo, Via Cintia 4, Napoli, I-80126, Italy
The publication contains the following compound(s):
- Compound ID: 7541
|
3HOMyr-(1-2)-+
|
P-4)-+ |
| |
Myr-(1-3)-3HOMyr-(1-3)-+ | |
| | |
Lau-(1-3)-3HOMyr-(1-2)-b-D-GlcpN-(1-6)-a-D-GlcpN-(1-P
| |
Subst-(2-6)-+ 3HOMyr-(1-3)-+
Subst = core oligosaccharide |
Show graphically |
Structure type: oligomer
Compound class: lipid A
Reference(s) to other database(s): GlycomeDB:
27820
- Compound ID: 9264
|
a-D-GalpA-(1-5)-+
|
a-D-GalpA-(1-4)-a-Kdop-(2-4)-+
|
a-D-GalpA-(1-4)-+ |
| |
Subst-(1-3)-a-L-Fucp-(1-4)-a-D-Manp-(1-3)-b-D-QuipNAc-(1-4)-a-Kdop-(2-6)-a-D-Galp-(1-6)-a-D-Manp-(1-5)-a-Kdo
Subst = O-antigen |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
- Compound ID: 9218
|
/Variants 1/-+ b-D-Glcp-(1-4)-+ /Variants 0/-+
| | |
b-D-GlcpNAc-(1-3)-L-gro-a-D-manHepp-(1-3)-L-gro-a-D-manHepp-(1-5)-a-Kdo
/Variants 0/ is:
a-Kop-(2-4)-
OR (exclusively)
a-Kdop-(2-4)-
/Variants 1/ is:
b-D-Galp-(1-7)-
OR (exclusively)
D-gro-a-D-manHepp-(1-7)- |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
- Compound ID: 9248
|
a-L-Rhap-(1-3)-b-D-GlcpN(%)Ac-(1-7)-+ P-4)-+
| |
a-D-Glcp-(1-2)-L-gro-a-D-manHepp-(1-6)-D-gro-a-D-manHepp-(1-5)-a-Kdop8N
|
L-gro-a-D-manHepp-(1-2)-+ |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G99665LW
- Compound ID: 9221
|
?%a-D-Galp-(1-7)-+ L-gro-a-D-manHepp-(1-7)-+ P-4)-+ a-Kdop-(2-2)-+
| | | |
?%L-gro-a-D-manHepp-(1-4)-?%a-Kdop-(2-2)-a-D-Glcp-(1-3)-a-D-Glcp-(1-3)-L-gro-a-D-manHepp-(1-3)-L-gro-a-D-manHepp-(1-5)-a-Kdo
|
P-4)-+ |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G76289QB, GlycomeDB:
37903
- Compound ID: 9214
|
a-D-GlcpN-(1-7)-L-gro-a-D-manHepp-(1-7)-+
|
Subst-(1-3)-b-D-Glcp-(1-3)-+ | /Variants 0/-+ a-Kdop-(2-4)-+
| | | |
a-D-Galp-(1-2)-a-D-Galp-(1-2)-a-D-Glcp-(1-3)-a-D-Glcp-(1-3)-L-gro-a-D-manHepp-(1-3)-L-gro-a-D-manHepp-(1-5)-a-Kdo
|
P-4)-+
/Variants 0/ is:
P-4)-
OR (exclusively)
EtN-(1---P---P---4)-
Subst = O-antigen |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
- Compound ID: 9247
|
/Variants 0/-+
|
D-GalaNAc-(1-4:1-6)-a-D-Galp-(1-3)-a-D-Galp-(1--P--3)--D-gro-a-D-manHepp-(1-5)-a-Kdop8N
/Variants 0/ is:
?%EtN-(1---P---P---4)-
OR (exclusively)
?%P-4)-
xDGalaN = S-D-GalN (open chain) |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
- Compound ID: 9235
|
a-Kdo-(2-4)-+
|
b-D-GlcpN-(1-7)-+ |
| |
a-D-GalpN-(1-4)-+ | |
| | |
a-D-Glcp-(1-2)-b-D-Galp-(1-4)-b-D-Glcp-(1-4)-b-D-Glcp-(1-3)-a-D-GlcpNAcA-(1-4)-a-Kdo-(2-5)-a-Kdo |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G23393KJ, GlycomeDB:
37906
- Compound ID: 9236
|
a-Kdo-(2-4)-+
|
b-D-GlcpN-(1-7)-+ |
| |
a-D-GalpNAc-(1-4)-a-D-GlcpNAcA-(1-4)-a-Kdo-(2-5)-a-Kdo |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G41038ML, GlycomeDB:
37907
- Compound ID: 9219
|
b-D-GlcpN-(1-4)-a-D-GalpA-(1-3)-+ b-D-Galp-(1-4)-+ /Variants 0/-+
| | |
?%a-D-GlcpN-(1-4)-a-D-GalpA-(1-7)-L-gro-a-D-manHepp-(1-7)-L-gro-a-D-manHepp-(1-3)-L-gro-a-D-manHepp-(1-5)-a-Kdo
|
?%b-D-Glcp-(1-2)-+
/Variants 0/ is:
a-Kop-(2-4)-
OR (exclusively)
a-Kdop-(2-4)- |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
- Compound ID: 9234
|
a-L-Rhap-(1-3)-+ a-Kdop-(2-4)-+
| |
b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1-3)-a-D-GalpNAc-(1-5)-a-Kdo |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G20948AN, GlycomeDB:
37905
- Compound ID: 9226
|
EtN-(1-0)-?%P---P--4)-+
|
L-gro-a-D-manHepp-(1-2)-L-gro-a-D-manHepp-(1-3)-+ |
| |
Cho-(1--P--3)--a-D-Galp-(1-6)-+ | |
| | |
Cho-(1--P--3)--b-D-Galp-(1-4)-L-gro-a-D-manHepp-(1-6)-b-D-Glcp-(1-4)-L-gro-a-D-manHepp-(1-5)-a-Kdo
|
a-D-Glcp-(1-6)-+ |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
- Compound ID: 9227
|
L-gro-a-D-manHepp-(1-2)-L-gro-a-D-manHepp-(1-3)-+
|
Cho-(1--P--3)--a-D-Galp-(1-6)-+ | a-Kdop-(2-4)-+
| | |
Cho-(1--P--3)--b-D-Galp-(1-4)-L-gro-a-D-manHepp-(1-6)-b-D-Glcp-(1-4)-L-gro-a-D-manHepp-(1-5)-a-Kdo |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
- Compound ID: 9258
|
a-Kdop-(2-4)-+
|
b-D-GlcpA6NH2-(1-3)-b-D-Glc-(1-4)-+ |
| |
3HO2,3MePro-5-oxo-(1-3)-b-Quip3N-(1-2)-a-L-Rhap-(1-4)-a-D-GalpA6NH2-(1-6)-a-D-Galp-(1-5)-a-Kdo |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
- Compound ID: 9231
|
a-L-Rhap-(1-6)-a-D-Glcp-(1-4)-+ P-6)-+ EtN-(1-0)-?%P---P--2)-+ a-Kdop-(2-4)-+
| | | |
b-D-GlcpNAc-(1-2)-b-D-Glcp-(1-3)-a-D-GalpN-(1-3)-L-gro-a-D-manHepp7Cm-(1-3)-L-gro-a-D-manHepp-(1-5)-a-Kdo
| |
Ala-(1-2)-+ P-4)-+ |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
- Compound ID: 9233
|
a-Kdop-(2-6)-a-D-Glcp-(1-4)-+ P-6)-+ EtN-(1-0)-?%P---P--2)-+ a-Kdop-(2-4)-+
| | | |
b-D-GlcpNAc-(1-2)-b-D-Glcp-(1-3)-a-D-GalpN-(1-3)-L-gro-a-D-manHepp7Cm-(1-3)-L-gro-a-D-manHepp-(1-5)-a-Kdop
| |
Ala-(1-2)-+ P-4)-+ |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
- Compound ID: 9254
|
a-D-GalpA-(1--P--4)--+
|
?%a-D-Rhap-(1-3)-a-D-Rhap-(1-6)-a-D-Manp-(1-6)-a-D-Manp-(1-5)-Kdo |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G60466RS
- Compound ID: 9245
|
L-gro-a-D-manHepp-(1-5)-a-Kop-(2-4)-+
|
EtN-(1--P--4)--+ b-D-Glcp-(1-4)-+ |
| | |
Subst-(1-3)-b-D-GlcpNAc-(1-3)-a-D-Glcp-(1-3)-L-gro-a-D-manHepp-(1-3)-L-gro-a-D-manHepp-(1-5)-a-Kdo
Subst = O-antigen |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
- Compound ID: 9229
|
S-Pyr-(2-6:2-4)-b-D-Glcp-(1-3)-+ P---P--6)-+ P-2)-+ a-Kdop-(2-4)-+
| | | |
R-Pyr-(2-6:2-4)-b-D-GlcpNAc-(1-4)-a-D-GalpNAc-(1-3)-L-gro-a-D-manHepp7Cm-(1-3)-L-gro-a-D-manHepp-(1-5)-a-Kdo
|
P-4)-+ |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
- Compound ID: 9212
|
a-Kdop-(2-4)-+
|
EtN-(1--P--7)--a-Kdop-(2-4)-+
|
a-D-GlcpNAc-(1-7)-L-gro-a-D-manHepp-(1-7)-+ |
| |
a-D-GlcpNAc-(1-3)-+ | /Variants 0/-+ |
| | | |
a-D-Glcp-(1-2)-a-D-Glcp-(1-2)-a-D-Galp-(1-3)-a-D-Glcp-(1-3)-L-gro-a-D-manHepp-(1-3)-L-gro-a-D-manHepp-(1-5)-a-Kdo
|
P-4)-+
/Variants 0/ is:
P-4)-
OR (exclusively)
EtN-(1---P---P---4)- |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
- Compound ID: 9261
|
b-D-Gal-(1-8)-+
|
?%b-D-GlcpN-(1-2)-b-D-Galp-(1-4)-a-Kdop-(2-4)-+
|
?%a-L-Rhap-(1-3)-a-L-Rhap-(1-2)-a-L-Rhap-(1-2)-a-L-Rhap-(1-3)-a-L-Rhap-(1-3)-a-D-Manp-(1-5)-a-Kdo |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G87816HK
- Compound ID: 9259
|
?%b-D-Galp-(1-8)-a-Kdop-(2-4)-+
|
?%a-D-Manp-(1-6)-a-D-Manp-(1-5)-a-Kdo |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G58077VM
- Compound ID: 9237
|
a-Kdop-(2-4)-+
|
b-D-GlcpN-(1-7)-+ |
| |
a-D-GalpN-(1-4)-+ | |
| | |
a-D-Glcp-(1-6)-a-D-Glcp-(1-6)-b-D-Glcp-(1-4)-b-D-Glcp-(1-3)-a-D-GlcpNAcA-(1-4)-a-Kdop-(2-5)-a-Kdo |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G26744NO, GlycomeDB:
37908
- Compound ID: 9238
|
a-Kdop-(2-4)-+
|
b-D-GlcpN-(1-7)-+ |
| |
b-D-Glcp-(1-4)-+ a-D-GalpN-(1-4)-+ | |
| | | |
a-D-Glcp-(1-6)-a-D-Glcp-(1-6)-b-D-Glcp-(1-4)-b-D-Glcp-(1-3)-a-D-GlcpNAcA-(1-4)-a-Kdop-(2-5)-a-Kdo |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G67063ZO, GlycomeDB:
37909
- Compound ID: 9225
|
b-D-GalpNAc-(1-3)-a-D-Galp-(1-4)-b-D-Galp-(1-4)-b-D-Glcp-(1-2)-L-gro-a-D-manHepp-(1-2)-+
|
Cho-(1--P--6)--+ | b-D-Glcp-(1-4)-+ EtN-(1---P---P---4)-+
| | | |
b-D-GalpNAc-(1-3)-a-D-Galp-(1-4)-b-D-Galp-(1-4)-a-D-Glcp-(1-3)-L-gro-a-D-manHepp-(1-3)-L-gro-a-D-manHepp-(1-5)-a-Kdo
|
EtN-(1--P--6)--+ |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
- Compound ID: 9253
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G25269TG
- Compound ID: 9251
|
b-D-Galp-(1-7)-+ P-4)-+
| |
?%a-D-Glcp-(1-4)-?%b-D-Galp-(1-4)-L-gro-a-D-manHepp-(1-5)-Kdo |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G10945HF
- Compound ID: 9249
|
EtN-(1-0)-?%P-0)-?%P-4)-+
|
D-GroA-(2--P--7)--+ |
| |
a-D-Glcp-(1-2)-L-gro-a-D-manHepp-(1-6)-D-gro-a-D-manHepp-(1-5)-a-Kdop8N
|
L-gro-a-D-manHepp-(1-2)-+ |
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Structure type: oligomer
Compound class: core oligosaccharide
- Compound ID: 9256
|
?%a-D-GalpA-(1--P--3)--+ P-4)-+
| |
?%b-D-Fruf-(2-4)-b-D-Glcp-(1-4)-L-gro-a-D-manHepp-(1-5)-Kdo
|
P-3)-a-D-GalpA-(1-2)-+ |
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Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G18778MR
- Compound ID: 8868
|
b-D-Galp-(1-8)-a-Kdop-(2-4)-+
|
a-D-Manp-(1-6)-+ |
| |
a-D-Manp-(1-2)-a-D-Manp-(1-3)-a-D-Manp-(1-3)-a-D-Manp-(1-5)-a-Kdo |
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Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G45058ML, GlycomeDB:
37840
- Compound ID: 9263
|
?%a-D-GalpA3Ac-(1-7)-a-Kdop-(2-4)-+
|
a-L-Fucp-(1-4)-+ a-3dlyxHepp-ulosaric-(2-3)-a-D-GalpA-(1-3)-b-D-Glcp-(1-4)-+ |
| | |
a-L-Fucp-(1-2)-b-D-Galp3(%)Ac4(%)Ac-(1-3)-a-D-GlcpNAc-(1-4)-b-D-GlcpA-(1-4)-a-D-GalpA-(1-3)-b-D-Glcp-(1-6)-a-D-Glcp3Ac-(1-5)-a-Kdop |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G41589XU
- Compound ID: 9241
|
b-L-Arap4N-(1-8)-a-Kop-(2-4)-+
|
a-L-Rhap-(1-2)-+ b-D-Glcp-(1-4)-+ |
| | |
D-gro-a-D-manHepp-(1-7)-L-gro-a-D-manHepp-(1-3)-L-gro-a-D-manHepp-(1-7)-L-gro-a-D-manHepp-(1-3)-L-gro-a-D-manHepp-(1-5)-a-Kdop |
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Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G04017UD, GlycomeDB:
37911
- Compound ID: 9243
|
b-L-Arap4N-(1-8)-a-Kop-(2-4)-+
|
L-gro-a-D-manHepp-(1-6)-b-D-Glcp-(1-4)-+ |
| |
b-D-QuipNAc-(1-3)-a-L-Rhap-(1-2)-+ | |
| | |
?%b-D-Glcp-(1-3)-?%a-D-GalpNAc-(1-3)-?%b-D-GalpNAc-(1-3)-a-L-Rhap-(1-3)-L-gro-a-D-manHepp-(1-3)-L-gro-a-D-manHepp-(1-5)-a-Kdop
|
L-gro-a-D-manHepp-(1-7)-+ |
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Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G95215KN, GlycomeDB:
36953
- Compound ID: 9239
|
b-D-Glcp-(1-6)-a-D-Glcp-(1-5)-+
|
?%a-D-GalpN-(1-3)-?%b-D-GalpN-(1-6)-?%a-D-Glcp-(1-5)-a-Kdop-(2-8)-a-Kdo
|
a-Kdop-(2-4)-+ |
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Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G67215ZW, GlycomeDB:
37910
- Compound ID: 9216
|
EtN-(1--P--3)--b-D-GalpA-(1-7)-L-gro-a-D-manHepp-(1-7)-+ EtN-(1---P---P---4)-+
| |
a-D-Glcp-(1-4)-b-D-Galp-(1-6)-a-D-Glcp-(1-2)-a-D-Glcp-(1-4)-a-D-Glcp-(1-3)-L-gro-a-D-manHepp-(1-3)-L-gro-a-D-manHepp-(1-5)-a-Kdo |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G64975WL
- Compound ID: 9217
|
EtN-(1--P--3)--b-D-GalpA-(1-7)-L-gro-a-D-manHepp-(1-7)-+
|
a-D-GlcpNAc-(1-3)-+ | EtN-(1---P---P---4)-+
| | |
a-D-Glcp-(1-2)-a-D-Galp-(1-2)-a-D-Galp-(1-4)-a-D-Glcp-(1-3)-L-gro-a-D-manHepp-(1-3)-L-gro-a-D-manHepp-(1-5)-a-Kdo |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G39033OL
- Compound ID: 9220
|
b-D-GalpA-(1-7)-L-gro-a-D-manHepp-(1-7)-+
|
a-D-GlcpNAc-(1-3)-+ |
| |
Subst-(1-4)-+ | | EtN-(1---P---P---4)-+ b-L-Arap4N-(1-8)-+
| | | | |
/Variants 0/-a-D-Glcp-(1-2)-a-D-Galp-(1-3)-a-D-Glcp-(1-3)-L-gro-a-D-manHepp-(1-3)-L-gro-a-D-manHepp-(1-5)-a-Kdo
|
EtN-(1--P--6)--+
/Variants 0/ is:
a-D-GlcpNAc-(1-2)-
OR (exclusively)
a-D-Glcp-(1-2)-
Subst = O-antigen |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
- Compound ID: 9222
|
b-D-Glcp-(1-4)-D-gro-a-D-manHepp-(1-6)-b-D-Glcp-(1-4)-+
|
L-gro-a-D-manHepp-(1-2)-+ | EtN-(1--P--4)--+
| | |
EtN-(1--P--6)--L-gro-a-D-manHepp-(1-3)-L-gro-a-D-manHepp-(1-5)-a-Kdo |
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Structure type: fragment of a bigger structure
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G35465PQ, GlycomeDB:
37903
- Compound ID: 9223
|
a-Neup5Ac-(2-3)-b-D-Galp-(1-4)-b-D-GlcpNAc-(1-3)-b-D-Galp-(1-4)-b-D-Glcp |
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Structure type: fragment of a bigger structure
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G01767JJ, GlycomeDB:
37903
- Compound ID: 9224
|
EtN-(1--P--6)--a-D-GalpNAc-(1-6)-b-D-Galp-(1-4)-b-D-GlcpNAc-(1-3)-b-D-Galp-(1-4)-b-D-Glcp |
Show graphically |
Structure type: fragment of a bigger structure
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G68833RX, GlycomeDB:
37903
- Compound ID: 9246
|
a-L-Rhap-(1-2)-+ ?%b-L-Arap4N-(1-7)-+ ?%a-Ko-(2-4)-+
| | |
a-L-Rhap-(1-2)-a-L-Rhap-(1-3)-a-L-Rhap-(1-3)-b-D-GlcpNAc-(1-3)-a-L-Rhap-(1-3)-L-gro-a-D-manHepp-(1-3)-L-gro-a-D-manHepp-(1-5)-a-Kdop
|
b-D-Glcp-(1-4)-+ |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G42611ZY
- Compound ID: 9266
|
Subst-(1-6)-a-D-Glcp-(1-4)-a-D-GlcpNAc-(1-4)-b-D-Glcp-(1-3)-+
|
?%L-gro-a-D-manHepp-(1-6)-+ | P-4)-+
| | |
a-D-Glcp-(1-7)-D-gro-a-D-manHepp-(1-2)-L-gro-a-D-manHepp-(1-4)-L-gro-a-D-manHepp-(1-5)-a-Kdo
Subst = O-antigen |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
- Compound ID: 9244
|
L-gro-a-D-manHepp-(1-7)-L-gro-a-D-manHepp-(1-7)-+ b-D-Glcp-(1-4)-+ a-Kop-(2-4)-+
| | |
?%b-D-Galp-(1-3)-?%a-D-GalpNAc-(1-3)-?%b-D-GalpNAc-(1-3)-L-gro-a-D-manHepp-(1-3)-L-gro-a-D-manHepp-(1-5)-a-Kdop
|
a-L-Rhap-(1-2)-+ |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G08282ML, GlycomeDB:
37913
- Compound ID: 9240
|
a-D-GalpA-(1--P--4)--+
|
/Variants 0/-+ |
| |
?%a-D-Manp-(1-3)-?%a-D-Manp-(1-4)-b-D-Glcp-(1-4)-a-D-Manp-(1-5)-a-Kdo
/Variants 0/ is:
P0NH2-(0-3)-
OR (exclusively)
a-D-GalpA-(1--P--3)-- |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
- Compound ID: 9257
|
EtN-(1--P--7)--+
|
L-gro-a-D-manHepp-(1-2)-L-gro-a-D-manHepp-(1-3)-+ | EtN-(1--P--4)--+
| | |
/Variants 0/-b-Psep5Ac-(2-6)-b-D-Glcp-(1-4)-D-gro-a-D-manHepp-(1-5)-Kdo
| |
EtN-(1--P--2)--+ EtN-(1--P--8)--+
/Variants 0/ is:
L-GroA-(1-7)-
OR (exclusively)
Ac-7)- |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
- Compound ID: 9265
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G25919EA
- Compound ID: 9213
|
b-D-GlcpN-(1-7)-L-gro-a-D-manHepp-(1-7)-+
|
b-D-Glcp-(1-3)-+ | EtN-(1---P---P---4)-+ a-Kdop-(2-4)-+
| | | |
a-D-Galp-(1-2)-a-D-Galp-(1-2)-a-D-Glcp-(1-3)-b-D-Glcp-(1-3)-L-gro-a-D-manHepp-(1-3)-L-gro-a-D-manHepp-(1-5)-a-Kdo |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G60147UE
- Compound ID: 9228
|
?%a-L-Rhap-(1-6)-?%a-D-Glcp-(1-4)-+
|
?%b-D-Glcp-(1-6)-?%b-D-Glcp-(1-3)-a-D-GalpNAc-(1-3)-L-gro-a-D-manHepp7Cm-(1-3)-L-gro-a-D-manHepp-(1-5)-a-Kdo |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GlycomeDB:
37904
- Compound ID: 9242
|
b-L-Arap4N-(1-8)-a-Kop-(2-4)-+
|
L-gro-a-D-manHepp-(1-7)-L-gro-a-D-manHepp-(1-7)-+ |
| |
a-D-Glcp-(1-6)-+ | b-D-Glcp-(1-4)-+ |
| | | |
?%a-L-Rhap-(1-3)-?%b-D-QuipNAc-(1-7)-L-gro-a-D-manHepp-(1-2)-a-D-Galp-(1-3)-L-gro-a-D-manHepp-(1-3)-L-gro-a-D-manHepp-(1-5)-a-Kdop |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G34138UB, GlycomeDB:
37912
- Compound ID: 9250
|
P-3)-+ P-4)-+
| |
?%a-D-Glcp-(1-4)-?%b-D-Galp-(1-4)-L-gro-a-D-manHepp-(1-5)-Kdo |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G96177EC
- Compound ID: 9252
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G11644PZ
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