This review reports and discusses the structural and the biological data available for the lipopolysaccharides from the Gram-negative bacterium Agrobacterium together with those of other related Rhizobiaceae species

Lipopolysaccharide, Rhizobium, symbiosis, Agrobacterium, Tumor induction

NCBI PubMed ID: 18353297
Publication DOI: 10.1016/j.carres.2008.01.036
Journal NLM ID: 0043535
Publisher: Elsevier
Correspondence: decastrounina.it; molinarounina.it
Institutions: Department of Organic Chemistry and Biochemistry, University of Naples Federico II, Complesso Universitario Monte Sant' Angelo, Via Cinthia 4, 80126 Napoli, Italy
Methods: 13C NMR, 1H NMR, NMR-2D, MS, composition analysis, NMR-1D
 

• Compound ID: 5
  

  -4)-b-D-Glcp-(1-3)-a-D-6dTalp2Ac-(1-3)-a-L-Fucp-(1-

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  Structure type: polymer chemical repeating unit
  Compound class: O-polysaccharide, O-antigen
  Reference(s) to other database(s): GTC:G67980NV, GlycomeDB:25177
  
   
  
  Rhizobium tropici CIAT899
  CSDB ID 22893 (all data & tools)
• Compound ID: 7741
  

  a-6dTalp3Me-(1-3)-+ | -4)-b-D-GlcpA6Me-(1-4)-a-L-Fucp-(1-

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  Structure type: polymer chemical repeating unit
  Compound class: O-polysaccharide
  Reference(s) to other database(s): GTC:G43823SI, GlycomeDB:36925
  
   
  
  Rhizobium etli CE3
  CSDB ID 22892 (all data & tools)
• Compound ID: 7749
  

  a-D-GalpA-(1-5)-+ | a-D-GalpA-(1-4)-a-Kdop-(2-4)-+ | a-D-GalpA-(1-4)-+ | | | Subst-(1-3)-a-L-Fucp-(1-4)-a-D-Manp-(1-3)-b-D-QuipNAc-(1-4)-a-Kdop-(2-6)-a-D-Galp-(1-6)-a-D-Manp-(1-5)-a-Kdop-(2--/(2->6)lipid A/ Subst = O-antigen

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  Structure type: oligomer
  Aglycon: (2->6)lipid A
  Compound class: core oligosaccharide
  
   
  
  Rhizobium etli CE3
  CSDB ID 22902 (all data & tools)
• Compound ID: 7753
  

  a-D-Manp-(1-4)-a-D-Glcp-(1-4)-a-Kdop

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  Structure type: oligomer
  Compound class: core oligosaccharide
  Reference(s) to other database(s): GTC:G05049RE, GlycomeDB:36934
  
   
  
  Bradyrhizobium
  CSDB ID 22906 (all data & tools)
• Compound ID: 1445
  

  -2)-a-L-Rhap-(1-3)-a-L-Rhap-(1-3)-a-L-Rhap-(1-2)-a-L-Rhap-(1-

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  Structure type: polymer chemical repeating unit
  Trivial name: L-rhamnan, water-soluble EPS
  Compound class: EPS, O-polysaccharide, O-antigen, polysaccharide, rhamnan
  Reference(s) to other database(s): GTC:G60116ZJ, GlycomeDB:27349
  
   
  
  Agrobacterium radiobacter DSM 30147
  CSDB ID 22889 (all data & tools)
• Compound ID: 1530
  

  a-D-Manp-(1-2)-+ | -3)-a-D-Fucp-(1-3)-a-D-Fucp-(1-

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  Structure type: polymer chemical repeating unit
  Compound class: O-polysaccharide, O-antigen
  Reference(s) to other database(s): GTC:G28333MQ, GlycomeDB:27374
  
   
  
  Agrobacterium radiobacter DSM 30147
  CSDB ID 22890 (all data & tools)
• Compound ID: 7738
  

  -3)-a-L-6dTalp4(%)Ac-(1-

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  Structure type: polymer chemical repeating unit
  Compound class: O-polysaccharide, O-antigen
  Reference(s) to other database(s): GTC:G85014VU
  
   
  
  Agrobacterium tumefaciens C58
  CSDB ID 22883 (all data & tools)
• Compound ID: 660
  

  -4)-a-L-Rhap-(1-3)-b-D-GlcpNAc-(1-

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  Structure type: polymer chemical repeating unit
  Trivial name: repeating unit
  Compound class: O-polysaccharide, O-antigen
  Reference(s) to other database(s): GTC:G35373OX, GlycomeDB:25158
  
   
  
  Agrobacterium tumefaciens F/1
  CSDB ID 22885 (all data & tools)
• Compound ID: 1770
  

  -3)-a-L-Rhap-(1-3)-b-D-GlcpNAc-(1-

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  Structure type: polymer chemical repeating unit
  Compound class: O-polysaccharide, O-antigen
  Reference(s) to other database(s): GTC:G50089GG, GlycomeDB:25159, CCSD:12534, CBank-STR:12551
  
   
  
  Agrobacterium tumefaciens F/1
  CSDB ID 22884 (all data & tools)
• Compound ID: 2288
  

  -2)-a-L-6dTalp-(1-3)-a-L-6dTalp-(1-2)-a-L-Rhap-(1-

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  Structure type: polymer chemical repeating unit
  Compound class: O-polysaccharide, O-antigen
  Reference(s) to other database(s): GTC:G55399LS, GlycomeDB:25360
  
   
  
  Mesorhizobium huakuii IFO 15243T
  CSDB ID 22896 (all data & tools)
• Compound ID: 7744
  

  a-Kdop-(2-4)-+ | b-D-GlcpA6NH2-(1-3)-b-D-Glcp-(1-4)-+ | P-4)-+ | | | 3HO2,3MePro-5-oxo-(1-3)-b-D-Quip3N-(1-2)-a-L-Rhap-(1-4)-a-D-GalpA6NH2-(1-6)-a-D-Galp-(1-5)-a-Kdop-(2-6)-b-D-GlcpN-(1-6)-a-D-GlcpN-(1-P

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  Structure type: oligomer
  Compound class: core oligosaccharide
  
   
  
  Agrobacterium larrymoorei
  CSDB ID 22897 (all data & tools)
• Compound ID: 7742
  

  -3)-a-L-6dTalp2Ac-(1-

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  Structure type: homopolymer
  Compound class: O-polysaccharide, O-antigen
  Reference(s) to other database(s): GTC:G25607OL, GlycomeDB:26285
  
   
  
  Rhizobium loti NZP2213
  CSDB ID 22894 (all data & tools)
• Compound ID: 7752
  

  a-D-GalpA-(1-3)-a-D-Glcp-(1-5)-a-Kdop

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  Structure type: oligomer
  Compound class: core oligosaccharide
  Reference(s) to other database(s): GTC:G02622MM, GlycomeDB:36933
  
   
  
  Sinorhizobium meliloti 102F51
  CSDB ID 22905 (all data & tools)
• Compound ID: 7754
  

  a-D-Manp4Me-(1-5)-a-Kdop

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  Structure type: oligomer
  Compound class: core oligosaccharide
  Reference(s) to other database(s): GTC:G84677QL, GlycomeDB:36935
  
   
  
  Bradyrhizobium japonicum 61A101c
  CSDB ID 22907 (all data & tools)
• Compound ID: 7746
  

  ?%b-D-GlcpN-(1-2)-b-D-Galp-(1-4)-b-D-Galp-(1-8)-a-Kdop-(2-4)-+ P-4)-+ | | ?%a-L-Rhap-(1-2)-a-L-Rhap-(1-2)-a-L-Rhap-(1-2)-a-L-Rhap-(1-3)-a-L-Rhap-(1-3)-a-D-Manp-(1-5)-a-Kdop-(2-6)-b-D-GlcpN-(1-6)-a-D-GlcpN-(1-P

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  Structure type: oligomer
  Compound class: core oligosaccharide
  Reference(s) to other database(s): GlycomeDB:36929
  
   
  
  Agrobacterium tumefaciens TT111, Agrobacterium tumefaciens DSM 30204
  CSDB ID 22899 (all data & tools)
• Compound ID: 7745
  

  ?%b-D-Galp-(1-8)-a-Kdop-(2-4)-+ P-4)-+ | | ?%a-D-Manp-(1-6)-a-D-Manp-(1-5)-a-Kdop-(2-6)-b-D-GlcpN-(1-6)-a-D-GlcpN-(1-P

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  Structure type: oligomer
  Compound class: core oligosaccharide
  Reference(s) to other database(s): GlycomeDB:27992
  
   
  
  Agrobacterium tumefaciens A1, Agrobacterium tumefaciens DSM 30150
  CSDB ID 22898 (all data & tools)
• Compound ID: 7737
  

  -3)-a-D-Araf-(1-3)-a-L-Fucp-(1-

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  Structure type: polymer chemical repeating unit
  Compound class: O-polysaccharide, O-antigen
  Reference(s) to other database(s): GTC:G48686WU, GlycomeDB:25386
  
   
  
  Agrobacterium tumefaciens B6
  CSDB ID 22632 (all data & tools)
• Compound ID: 7739
  

  -3)-a-D-Fucp-(1-4)-a-L-Rhap-(1-

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  Structure type: polymer chemical repeating unit
  Compound class: O-polysaccharide
  Reference(s) to other database(s): GTC:G17417PD, GlycomeDB:36924
  
   
  
  Agrobacterium tumefaciens TT9
  CSDB ID 22886 (all data & tools)
• Compound ID: 7740
  

  -4)-D-3,4HO1,3MePro-5-oxo-(1-4)-a-D-Fucp4N3Me-(1-

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  Structure type: polymer chemical repeating unit
  Compound class: O-polysaccharide, O-antigen
  
   
  
  Agrobacterium tumefaciens TT9
  CSDB ID 22887 (all data & tools)
• Compound ID: 1443
  

  -3)-L-gro-a-D-manHepp-(1-

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  Structure type: homopolymer
  Compound class: O-polysaccharide, O-antigen
  Reference(s) to other database(s): GTC:G24651SF, GlycomeDB:27347
  
   
  
  Agrobacterium radiobacter M2/1
  CSDB ID 22888 (all data & tools)
• Compound ID: 5478
  

  a-D-ManpNAc-(1-2)-+ | -3)-a-L-Rhap-(1-3)-a-L-Rhap-(1-4)-b-D-GlcpNAc-(1-3)-a-L-Rhap-(1-

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  Structure type: polymer chemical repeating unit
  Compound class: O-polysaccharide, O-antigen
  Reference(s) to other database(s): GTC:G83001VX, GlycomeDB:6724
  
   
  
  Rhizobium leguminosarum bv. trifolii 4S
  CSDB ID 22891 (all data & tools)
• Compound ID: 7743
  

  a-D-Manp-(1-2)-+ | -3)-a-L-Rhap-(1-3)-a-L-Fucp-(1-3)-a-L-Fucp-(1-

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  Structure type: polymer chemical repeating unit
  Compound class: O-polysaccharide, O-antigen
  Reference(s) to other database(s): GTC:G19308IN, GlycomeDB:36926
  
   
  
  Rhizobium leguminosarum bv. viciae 128C53
  CSDB ID 22895 (all data & tools)
• Compound ID: 7747
  

  b-D-Galp-(1-8)-a-Kdop-(2-4)-+ | a-D-Manp-(1-6)-+ | P-4)-+ | | | a-D-Manp-(1-2)-a-D-Manp-(1-3)-a-D-Manp-(1-3)-a-D-Manp-(1-5)-a-Kdop-(2-6)-b-D-GlcpN-(1-6)-a-D-GlcpN-(1-P

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  Structure type: oligomer
  Compound class: core oligosaccharide
  Reference(s) to other database(s): GlycomeDB:36930
  
   
  
  Agrobacterium radiobacter Rv3, Agrobacterium radiobacter DSM 30207
  CSDB ID 22900 (all data & tools)
• Compound ID: 7748
  

  ?%a-D-GalpA3Ac-(1-7)-a-Kdop-(2-4)-+ | a-L-Fucp-(1-4)-+ a-3dlyxHepp-ulosaric-(2-3)-a-D-GalpA-(1-3)-b-D-Glcp-(1-4)-+ | P-4)-+ | | | | a-L-Fucp-(1-2)-b-D-Galp3(%)Ac4(%)Ac-(1-3)-a-D-GlcpN-(1-4)-b-D-GlcpA-(1-4)-a-D-GalpA-(1-3)-b-D-Glcp-(1-6)-a-D-Glcp-(1-5)-a-Kdop-(2-6)-b-D-GlcpN-(1-6)-a-D-GlcpN-(1-P

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  Structure type: oligomer
  Compound class: core oligosaccharide
  
   
  
  Agrobacterium rubi T, Agrobacterium rubi DSM 6772
  CSDB ID 22901 (all data & tools)
• Compound ID: 7750
  

  b-D-GlcpN-(1-4)-a-Kdo

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  Structure type: oligomer
  Compound class: core oligosaccharide
  Reference(s) to other database(s): GTC:G28131QA, GlycomeDB:36931
  
   
  
  Sinorhizobium
  CSDB ID 22903 (all data & tools)
• Compound ID: 7751
  

  a-D-GlcpA-(1-4)-a-Kdo

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  Structure type: oligomer
  Compound class: core oligosaccharide
  Reference(s) to other database(s): GTC:G10217NL, GlycomeDB:36932
  
   
  
  Sinorhizobium
  CSDB ID 22904 (all data & tools)