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1. (Article ID: 3830)
Carlson RW, Forsberg LS, Kannenberg EL
Lipopolysaccharides in Rhizobium-Legume Symbioses
Book: Endotoxins: Structure, Function and Recognition (series: Subcellular Biochemistry, 2010, Part 1) (2010)
Vol. 53, Chapter 16, 339-386
The establishment of nitrogen-fixing symbiosis between a legume plant and its rhizobial symbiont requires that the bacterium adapt to changing conditions that occur with the host plant that both promotes and allows infection of the host root nodule cell, regulates and resists the host defense response, permits the exchange of metabolites, and contributes to the overall health of the host. This adaptive process involves changes to the bacterial cell surface and, therefore, structural modifications to the lipopolysaccharide (LPS). In this chapter, we describe the structures of the LPSs from symbiont members of the Rhizobiales, the genetics and mechanism of their biosynthesis, the modifications that occur during symbiosis, and their possible functions.
biosynthesis, lipopolysaccharides, structure, Rhizobium, symbiosis, plant defense
NCBI PubMed ID: 20593275Publication DOI: 10.1007/978-90-481-9078-2_16Publisher: Springer Science+Business Media B.V.
Editors: Wang X, Quinn PJ
Correspondence: rcarlson
ccrc.uga.edu
Institutions: Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Rd., Athens, GA 30602, USA
The publication contains the following compound(s):
- Compound ID: 5
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G67980NV, GlycomeDB:
25177
- Compound ID: 8873
Structure type: polymer chemical repeating unit
; n=5
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G02336TT, GlycomeDB:
37842
- Compound ID: 8874
|
a-L-Fucp2Me3Me4Me-(1-4)-Subst-(1-3)-a-L-Fucp-(1-3)-b-D-Manp-(1-3)-b-L-QuipNAc-(1--/core-lipid A/
Subst = O-antigen (ID 25565) |
Show graphically |
Structure type: oligomer
Aglycon: core-lipid A
Compound class: O-polysaccharide, O-antigen
- Compound ID: 8865
|
a-D-GalpA-(1-5)-+
|
a-D-GalpA-(1-4)-a-Kdop-(2-4)-+
|
a-D-GalpA-(1-4)-+ |
| |
a-Kdop-(2-6)-a-D-Galp-(1-6)-a-D-Manp-(1-5)-a-Kdo |
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Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G40482KL, GlycomeDB:
37794
- Compound ID: 8872
|
a-D-6dTalp2Ac3Me4(20%)Ac-(1-3)-+
|
Sugp4Fo-(1-4)-{{{-b-D-Glcp3NAmA-(1-4)-a-L-Fucp2(20%)Ac-(1-3)-a-L-QuipNAc-(1-4)-}}}/n=3-4/-b-D-Glcp3NAmA-(1--/->4) Kdo of core-lipid A/
Sug = 4,6-dideoxy-4-amino-hexopyranose |
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Structure type: oligomer
Aglycon: ->4) Kdo of core-lipid A
Compound class: O-polysaccharide, O-antigen
- Compound ID: 4370
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G99331HR
- Compound ID: 1445
Structure type: polymer chemical repeating unit
Trivial name: L-rhamnan, water-soluble EPS
Compound class: EPS, O-polysaccharide, O-antigen, polysaccharide, rhamnan
Reference(s) to other database(s): GTC:G60116ZJ, GlycomeDB:
27349
- Compound ID: 1530
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G28333MQ, GlycomeDB:
27374
- Compound ID: 2288
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G55399LS, GlycomeDB:
25360
- Compound ID: 8869
|
a-Kdop-(2-4)-+
|
b-D-GlcpA6NH2-(1-3)-b-D-Glcp-(1-4)-+ |
| |
3HO2,3MePro-5-oxo-(1-3)-b-D-Quip3N-(1-2)-a-L-Rhap-(1-4)-a-D-GalpA6NH2-(1-6)-a-D-Galp-(1-5)-a-Kdo |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GlycomeDB:
37841
- Compound ID: 8871
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G85744RS
- Compound ID: 5478
|
a-D-ManpNAc-(1-2)-+
|
-3)-a-L-Rhap-(1-3)-a-L-Rhap-(1-4)-b-D-GlcpNAc-(1-3)-a-L-Rhap-(1- |
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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G83001VX, GlycomeDB:
6724
- Compound ID: 7743
|
a-D-Manp-(1-2)-+
|
-3)-a-L-Rhap-(1-3)-a-L-Fucp-(1-3)-a-L-Fucp-(1- |
Show graphically |
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G19308IN, GlycomeDB:
36926
- Compound ID: 8870
|
a-D-GalpA-(1-7)-a-Kdop-(2-4)-+
|
a-L-Fucp-(1-4)-+ a-3dlyxHepp-ulosaric-(2-3)-a-D-GalpA-(1-3)-b-D-Glcp-(1-4)-+ |
| | |
a-L-Fucp-(1-2)-b-D-Galp3Ac4Ac-(1-3)-a-D-GlcpN-(1-4)-b-D-GlcpA-(1-4)-a-D-GalpA-(1-3)-b-D-Glcp-(1-6)-a-D-Glcp3Ac-(1-5)-a-Kdo |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G28206AZ
- Compound ID: 8876
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G99439HP
- Compound ID: 8102
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G67383QE
- Compound ID: 7742
Structure type: homopolymer
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G25607OL, GlycomeDB:
26285
- Compound ID: 8866
|
b-D-Galp-(1-8)-a-Kdop-(2-4)-+
|
a-D-Manp-(1-6)-a-D-Manp-(1-5)-a-Kdo |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G58077VM, GlycomeDB:
37838
- Compound ID: 8867
|
b-D-GlcpN-(1-2)-b-D-Galp-(1-4)-b-D-Galp-(1-8)-a-Kdop-(2-4)-+
|
a-L-Rhap-(1-2)-a-L-Rhap-(1-2)-a-L-Rhap-(1-2)-a-L-Rhap-(1-3)-a-L-Rhap-(1-3)-a-D-Manp-(1-5)-a-Kdo |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G27993FS, GlycomeDB:
37839
- Compound ID: 8868
|
b-D-Galp-(1-8)-a-Kdop-(2-4)-+
|
a-D-Manp-(1-6)-+ |
| |
a-D-Manp-(1-2)-a-D-Manp-(1-3)-a-D-Manp-(1-3)-a-D-Manp-(1-5)-a-Kdo |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G45058ML, GlycomeDB:
37840
- Compound ID: 8875
|
-3)-a-L-6dTalp2Ac-(1-3)-a-L-6dTalp2(50%)Me-(1-3)-a-L-6dTalp-(1-3)-a-L-6dTalp-(1- |
Show graphically |
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G61276PH
- Compound ID: 7738
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G85014VU
- Compound ID: 7737
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G48686WU, GlycomeDB:
25386
- Compound ID: 660
Structure type: polymer chemical repeating unit
Trivial name: repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G35373OX, GlycomeDB:
25158
- Compound ID: 1770
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G50089GG, GlycomeDB:
25159, CCSD:
12534, CBank-STR:12551
- Compound ID: 1443
Structure type: homopolymer
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G24651SF, GlycomeDB:
27347
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