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Ichikawa T, Nishikawa A, Wada H, Ikeda R, Shinoda T
Structural studies of the antigen III cell wall polysaccharide of Trichosporon domesticum
Carbohydrate Research 330 (2001)
495-503
|
b-D-GlcpA-(1-2)-+
|
-3)-a-D-Manp-(1-3)-a-D-Manp-(1-3)-a-D-Manp-(1- |
Show graphically |
Trichosporon domesticum M 9401
(Ancestor NCBI TaxID 82514,
species name lookup)
Taxonomic group: fungi / Basidiomycota
(Phylum: Basidiomycota)
The structure was elucidated in this paperJournal NLM ID: 0043535WWW link: http://www.sciencedirect.com/science/article/pii/S0008621500003256Publisher: Elsevier
Correspondence: ichikawa-myk

umin.ac.jp
Institutions: Department of Microbiology, Meiji Pharmaceutical University, 2-522-1 Noshio, Kiyose, Tokyo 204-8588, Japan, Department of Immunobiology, Meiji Pharmaceutical University, 2-522-1 Noshio, Kiyose, Tokyo 204-8588, Japan
Cell wall and soluble polysaccharides that reacted with Trichosporon domesticum factor III serum were isolated from the type strain of T. domesticum. The fractions contained O-acetyl groups, which contributed to the serological reactivity. The antigenic structure was characterized by chromatographic and spectroscopic methods. The polysaccharide has an α-(1→3)-D-mannan backbone with hetero-oligosaccharide side chains consisting of a 2-O-substituted β-D-glucuronic acid residue bound to O-2 of the mannose residue, β-D-xylopyranosyl residues located in the middle of the side chain, and a nonreducing terminal α-L-arabinopyranosyl residue bound to 0-4 of xylose. The mannan backbone is O-acetylated at O-6 of the mannose residues
antigenic polysaccharide, chemical structures, Trichosporon domesticum
Structure type: structural motif or average structure
Location inside paper: p. 498
Trivial name: glucuronoxylomannan (GXM), glucuronoxylomannan (GXM) Motif M6
Compound class: CPS, cell wall polysaccharide
Contained glycoepitopes: IEDB_115136,IEDB_115576,IEDB_130701,IEDB_140116,IEDB_140630,IEDB_144983,IEDB_152206,IEDB_164174,IEDB_423153,IEDB_76933,IEDB_983930,SB_197,SB_44,SB_67,SB_72
Methods: 13C NMR, 1H NMR, partial acid hydrolysis, TLC, acid hydrolysis, GLC, carboxyl reduction, Smith degradation, methylation analysis, gel filtration chromatography, optical rotation, Lowry method, immunological analysis, ion exchange CC, partial and complete deacetylation
Comments, role: polymerization frame was shifted due to compatibility with other records
Related record ID(s): 40612, 40613, 40617
NCBI Taxonomy refs (TaxIDs): 82514Reference(s) to other database(s): GTC:G44037XE
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There is only one chemically distinct structure:
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Ichikawa T, Nishikawa A, Wada H, Ikeda R, Shinoda T
Structural studies of the antigen III cell wall polysaccharide of Trichosporon domesticum
Carbohydrate Research 330 (2001)
495-503
Trichosporon domesticum M 9401
(Ancestor NCBI TaxID 82514,
species name lookup)
Taxonomic group: fungi / Basidiomycota
(Phylum: Basidiomycota)
The structure was elucidated in this paperJournal NLM ID: 0043535WWW link: http://www.sciencedirect.com/science/article/pii/S0008621500003256Publisher: Elsevier
Correspondence: ichikawa-myk

umin.ac.jp
Institutions: Department of Microbiology, Meiji Pharmaceutical University, 2-522-1 Noshio, Kiyose, Tokyo 204-8588, Japan, Department of Immunobiology, Meiji Pharmaceutical University, 2-522-1 Noshio, Kiyose, Tokyo 204-8588, Japan
Cell wall and soluble polysaccharides that reacted with Trichosporon domesticum factor III serum were isolated from the type strain of T. domesticum. The fractions contained O-acetyl groups, which contributed to the serological reactivity. The antigenic structure was characterized by chromatographic and spectroscopic methods. The polysaccharide has an α-(1→3)-D-mannan backbone with hetero-oligosaccharide side chains consisting of a 2-O-substituted β-D-glucuronic acid residue bound to O-2 of the mannose residue, β-D-xylopyranosyl residues located in the middle of the side chain, and a nonreducing terminal α-L-arabinopyranosyl residue bound to 0-4 of xylose. The mannan backbone is O-acetylated at O-6 of the mannose residues
antigenic polysaccharide, chemical structures, Trichosporon domesticum
Structure type: oligomer
Location inside paper: Fig. 3
Contained glycoepitopes: IEDB_114701
Methods: 13C NMR, 1H NMR, partial acid hydrolysis, TLC, acid hydrolysis, GLC, carboxyl reduction, Smith degradation, methylation analysis, gel filtration chromatography, optical rotation, Lowry method, immunological analysis, ion exchange CC, partial and complete deacetylation
Related record ID(s): 40441, 40613, 40617
NCBI Taxonomy refs (TaxIDs): 82514Reference(s) to other database(s): GTC:G88513FT
Show glycosyltransferases
NMR conditions: in D2O at 348 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5
4 aLArap 104.45 73.27 74.92 70.76 68.76
aDXylp 94.61 74.01 ? ? ?
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5
4 aLArap 4.38 3.54 3.64 3.92 3.63-3.94
aDXylp 5.16 3.54 3.76 ? ?
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5
4 aLArap 104.45/4.38 73.27/3.54 74.92/3.64 70.76/3.92 68.76/3.63-3.94
aDXylp 94.61/5.16 74.01/3.54 ?/3.76 ?/? ?/?
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 |
| 4 | aLArap | 4.38 | 3.54 | 3.64 | 3.92 | 3.63 3.94 |
| | aDXylp | 5.16 | 3.54 | 3.76 | ? | ? |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 |
| 4 | aLArap | 104.45 | 73.27 | 74.92 | 70.76 | 68.76 |
| | aDXylp | 94.61 | 74.01 | ? | ? | ? |
|
 The spectrum also has 3 signals at unknown positions (not plotted). |
There is only one chemically distinct structure:
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Ichikawa T, Nishikawa A, Wada H, Ikeda R, Shinoda T
Structural studies of the antigen III cell wall polysaccharide of Trichosporon domesticum
Carbohydrate Research 330 (2001)
495-503
|
/Variants 0/-b-D-Xylp-(1-2)-b-D-GlcpA-(1-2)-+
|
-3)-a-D-Manp-(1-3)-a-D-Manp6Ac-(1-3)-a-D-Manp6Ac-(1-
/Variants 0/ is:
a-L-Arap-(1-4)-b-D-Xylp-(1-4)-
OR (exclusively)
a-L-Arap-(1-4)-b-D-Xylp-(1-2)- |
Show graphically |
Trichosporon domesticum M 9401
(Ancestor NCBI TaxID 82514,
species name lookup)
Taxonomic group: fungi / Basidiomycota
(Phylum: Basidiomycota)
Journal NLM ID: 0043535WWW link: http://www.sciencedirect.com/science/article/pii/S0008621500003256Publisher: Elsevier
Correspondence: ichikawa-myk

umin.ac.jp
Institutions: Department of Microbiology, Meiji Pharmaceutical University, 2-522-1 Noshio, Kiyose, Tokyo 204-8588, Japan, Department of Immunobiology, Meiji Pharmaceutical University, 2-522-1 Noshio, Kiyose, Tokyo 204-8588, Japan
Cell wall and soluble polysaccharides that reacted with Trichosporon domesticum factor III serum were isolated from the type strain of T. domesticum. The fractions contained O-acetyl groups, which contributed to the serological reactivity. The antigenic structure was characterized by chromatographic and spectroscopic methods. The polysaccharide has an α-(1→3)-D-mannan backbone with hetero-oligosaccharide side chains consisting of a 2-O-substituted β-D-glucuronic acid residue bound to O-2 of the mannose residue, β-D-xylopyranosyl residues located in the middle of the side chain, and a nonreducing terminal α-L-arabinopyranosyl residue bound to 0-4 of xylose. The mannan backbone is O-acetylated at O-6 of the mannose residues
antigenic polysaccharide, chemical structures, Trichosporon domesticum
Structure type: structural motif or average structure
Location inside paper: Fig. 3
Contained glycoepitopes: IEDB_114701,IEDB_115136,IEDB_115576,IEDB_130701,IEDB_140116,IEDB_140630,IEDB_144983,IEDB_152206,IEDB_164174,IEDB_167188,IEDB_174332,IEDB_423153,IEDB_76933,IEDB_983930,SB_197,SB_44,SB_67,SB_72
Methods: 13C NMR, 1H NMR, partial acid hydrolysis, TLC, acid hydrolysis, GLC, carboxyl reduction, Smith degradation, methylation analysis, gel filtration chromatography, optical rotation, Lowry method, immunological analysis, ion exchange CC, partial and complete deacetylation
Comments, role: possible major repeating structure; more -4)bDXylp(1- or -2)bDXylp(1- may be present in the side chain (up to 4 in total)
Related record ID(s): 40441, 40612, 40617
NCBI Taxonomy refs (TaxIDs): 82514
Show glycosyltransferases
There is only one chemically distinct structure:
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Ichikawa T, Nishikawa A, Wada H, Ikeda R, Shinoda T
Structural studies of the antigen III cell wall polysaccharide of Trichosporon domesticum
Carbohydrate Research 330 (2001)
495-503
Trichosporon domesticum M 9401
(Ancestor NCBI TaxID 82514,
species name lookup)
Taxonomic group: fungi / Basidiomycota
(Phylum: Basidiomycota)
The structure was elucidated in this paperJournal NLM ID: 0043535WWW link: http://www.sciencedirect.com/science/article/pii/S0008621500003256Publisher: Elsevier
Correspondence: ichikawa-myk

umin.ac.jp
Institutions: Department of Microbiology, Meiji Pharmaceutical University, 2-522-1 Noshio, Kiyose, Tokyo 204-8588, Japan, Department of Immunobiology, Meiji Pharmaceutical University, 2-522-1 Noshio, Kiyose, Tokyo 204-8588, Japan
Cell wall and soluble polysaccharides that reacted with Trichosporon domesticum factor III serum were isolated from the type strain of T. domesticum. The fractions contained O-acetyl groups, which contributed to the serological reactivity. The antigenic structure was characterized by chromatographic and spectroscopic methods. The polysaccharide has an α-(1→3)-D-mannan backbone with hetero-oligosaccharide side chains consisting of a 2-O-substituted β-D-glucuronic acid residue bound to O-2 of the mannose residue, β-D-xylopyranosyl residues located in the middle of the side chain, and a nonreducing terminal α-L-arabinopyranosyl residue bound to 0-4 of xylose. The mannan backbone is O-acetylated at O-6 of the mannose residues
antigenic polysaccharide, chemical structures, Trichosporon domesticum
Structure type: oligomer
Location inside paper: Fig. 3
Contained glycoepitopes: IEDB_114701,IEDB_167188,IEDB_174332
Methods: 13C NMR, 1H NMR, partial acid hydrolysis, TLC, acid hydrolysis, GLC, carboxyl reduction, Smith degradation, methylation analysis, gel filtration chromatography, optical rotation, Lowry method, immunological analysis, ion exchange CC, partial and complete deacetylation
Related record ID(s): 40441, 40612, 40613
NCBI Taxonomy refs (TaxIDs): 82514Reference(s) to other database(s): GTC:G37293SE
Show glycosyltransferases
NMR conditions: in D2O at 348 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5
4 aLArap 104.45 73.27 74.92 70.76 68.76
bDXylp 99.12 76.65 76.61 79.09 65.66
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5
4 aLArap 4.38 3.54 3.64 3.92 3.63-3.94
bDXylp 4.57 3.25 3.55 3.76 3.37-4.04
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5
4 aLArap 104.45/4.38 73.27/3.54 74.92/3.64 70.76/3.92 68.76/3.63-3.94
bDXylp 99.12/4.57 76.65/3.25 76.61/3.55 79.09/3.76 65.66/3.37-4.04
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 |
| 4 | aLArap | 4.38 | 3.54 | 3.64 | 3.92 | 3.63 3.94 |
| | bDXylp | 4.57 | 3.25 | 3.55 | 3.76 | 3.37 4.04 |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 |
| 4 | aLArap | 104.45 | 73.27 | 74.92 | 70.76 | 68.76 |
| | bDXylp | 99.12 | 76.65 | 76.61 | 79.09 | 65.66 |
|
There is only one chemically distinct structure:
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