Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Associated disease: infection due to Proteus vulgaris [ICD11:
XN118 
]
The structure was elucidated in this paperNCBI PubMed ID: 9232841Publication DOI: 10.1016/S0008-6215(97)00093-1Journal NLM ID: 0043535Publisher: Elsevier
Correspondence: rcarlson

ccrc.uga.edu
Institutions: Complex Carbohydrate Research Center, University of Georgia, Athens 30602, USA, Unated States Department of Agriculture,Agricultural Researche Service, Southeast Poultry Researche Laboratory, 934 College Station Road, Athens 30602, USA
The structure was determined for the capsular polysaccharide (CPS) isolated from a swarming strain of Proteus vulgaris, CP2-96, which was obtained from the spleen of an infected mouse. The CPS was extracted from the cell pellet by hot water, precipitated with ethanol, and further purified by gel-permeation chromatography. The structure was established by glycosyl composition and linkage analyses, and by NMR spectroscopy. The sequence of the glycosyl residues was determined by a NOESY experiment. The CPS is composed of a tetrasaccharide repeating unit with the following structure: →4)-β-D-Glcp-(1→3)-β-D-GalpNAc4OAc-(1→2)-α-D-Glcp-(1→4)-α-D-GlcpA-(1→.
Lipopolysaccharide, structure, capsular polysaccharide, polysaccharides, Proteus vulgaris, swarming
Structure type: polymer chemical repeating unit
Location inside paper: p.213, p.218
The structure in this paper was incorrect:
Compound class: EPS, CPS
Contained glycoepitopes: IEDB_115136,IEDB_130648,IEDB_137473,IEDB_140630,IEDB_142488,IEDB_144998,IEDB_146664,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, NMR-2D, methylation, GC-MS, NMR, composition analysis, preparative PAGE
Comments, role: some of reported H1 NOE contacts and 13C NMR assignment of GlcA C5 and aGlc C1 contradict published α-anomeric configuration of GlcA; however GlcA H1 value suggests α-anomeric configuration. The configuration of GlcA was set to unknown by CSDB staff.
Related record ID(s): 118551
NCBI Taxonomy refs (TaxIDs): 585Reference(s) to other database(s): GTC:G11070DU, GlycomeDB:
26263
Show glycosyltransferases
NMR conditions: in D2O at 313 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
4,2,3 bDGlcp 105.2 73.9 77.1 81.8 75.7 61.9
4,2,2 Ac
4,2,4 Ac
4,2 bDGalpN 104.3 52.8 81.2 69.2 76.1 61.7
4 aDGlcp 99.3 79.3 72.8 70.9 72.6 61.9
aDGlcpA 101.2 72.6 74.8 77.6 74.6 ?
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
4,2,3 bDGlcp 4.53 3.36 3.77 3.61 3.60 3.73-3.91
4,2,2 Ac
4,2,4 Ac
4,2 bDGalpN 4.72 4.03 3.92 4.19 3.72 3.76
4 aDGlcp 5.63 3.61 3.76 3.41 3.71 3.80-3.85
aDGlcpA 5.32 3.67 3.98 3.81 4.08 -
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
4,2,3 bDGlcp 105.2/4.53 73.9/3.36 77.1/3.77 81.8/3.61 75.7/3.60 61.9/3.73-3.91
4,2,2 Ac
4,2,4 Ac
4,2 bDGalpN 104.3/4.72 52.8/4.03 81.2/3.92 69.2/4.19 76.1/3.72 61.7/3.76
4 aDGlcp 99.3/5.63 79.3/3.61 72.8/3.76 70.9/3.41 72.6/3.71 61.9/3.80-3.85
aDGlcpA 101.2/5.32 72.6/3.67 74.8/3.98 77.6/3.81 74.6/4.08
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
4,2,3 | bDGlcp | 4.53 | 3.36 | 3.77 | 3.61 | 3.60 | 3.73 3.91 |
4,2,2 | Ac | |
4,2,4 | Ac | |
4,2 | bDGalpN | 4.72 | 4.03 | 3.92 | 4.19 | 3.72 | 3.76 |
4 | aDGlcp | 5.63 | 3.61 | 3.76 | 3.41 | 3.71 | 3.80 3.85 |
| aDGlcpA | 5.32 | 3.67 | 3.98 | 3.81 | 4.08 |
|
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
4,2,3 | bDGlcp | 105.2 | 73.9 | 77.1 | 81.8 | 75.7 | 61.9 |
4,2,2 | Ac | |
4,2,4 | Ac | |
4,2 | bDGalpN | 104.3 | 52.8 | 81.2 | 69.2 | 76.1 | 61.7 |
4 | aDGlcp | 99.3 | 79.3 | 72.8 | 70.9 | 72.6 | 61.9 |
| aDGlcpA | 101.2 | 72.6 | 74.8 | 77.6 | 74.6 | ? |
|
 The spectrum also has 1 signal at unknown position (not plotted). |
There is only one chemically distinct structure:
Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
Associated disease: infection due to Proteus vulgaris [ICD11:
XN118 
]
The structure was elucidated in this paperNCBI PubMed ID: 9232841Publication DOI: 10.1016/S0008-6215(97)00093-1Journal NLM ID: 0043535Publisher: Elsevier
Correspondence: rcarlson

ccrc.uga.edu
Institutions: Complex Carbohydrate Research Center, University of Georgia, Athens 30602, USA, Unated States Department of Agriculture,Agricultural Researche Service, Southeast Poultry Researche Laboratory, 934 College Station Road, Athens 30602, USA
The structure was determined for the capsular polysaccharide (CPS) isolated from a swarming strain of Proteus vulgaris, CP2-96, which was obtained from the spleen of an infected mouse. The CPS was extracted from the cell pellet by hot water, precipitated with ethanol, and further purified by gel-permeation chromatography. The structure was established by glycosyl composition and linkage analyses, and by NMR spectroscopy. The sequence of the glycosyl residues was determined by a NOESY experiment. The CPS is composed of a tetrasaccharide repeating unit with the following structure: →4)-β-D-Glcp-(1→3)-β-D-GalpNAc4OAc-(1→2)-α-D-Glcp-(1→4)-α-D-GlcpA-(1→.
Lipopolysaccharide, structure, capsular polysaccharide, polysaccharides, Proteus vulgaris, swarming
Structure type: polymer chemical repeating unit
Compound class: CPS
Contained glycoepitopes: IEDB_115136,IEDB_130648,IEDB_137473,IEDB_140630,IEDB_142488,IEDB_144998,IEDB_146664,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, NMR-2D, methylation, GC-MS, NMR, composition analysis, preparative PAGE
Biological activity: virulence factor
Related record ID(s): 4306
NCBI Taxonomy refs (TaxIDs): 585Reference(s) to other database(s): GTC:G04002ID, GlycomeDB:
6927
Show glycosyltransferases
There is only one chemically distinct structure: