CSDB: Search results

Found 2 organisms. Displayed organisms from 1 to 2
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1. (Organism ID: 460)

Burkholderia cepacia

(NCBI TaxID 292, species name lookup)

Previously named: Pseudomonas cepacia
Taxonomic group: bacteria
Phylum: Proteobacteria

The following compound(s) are assigned to this organism:

Compound ID: 816

Ko Show graphically

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Structure type: monomer
Reference(s) to other database(s): GTC:G28173NF, GlycomeDB:26692

Carbohydrate Research 2000, "Synthesis of neoglycoproteins containing D-glycero-D-talo-oct-2-ulopyranosylonic acid (Ko) ligands corresponding to core units from Burkholderia and Acinetobacter lipopolysaccharide"
CSDB ID 5587 (all data & tools)
Compound ID: 817

a-Kdop-(2-4)-Ko Show graphically

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Structure type: oligomer
Reference(s) to other database(s): GTC:G47731SV, GlycomeDB:26789

Carbohydrate Research 2000, "Synthesis of neoglycoproteins containing D-glycero-D-talo-oct-2-ulopyranosylonic acid (Ko) ligands corresponding to core units from Burkholderia and Acinetobacter lipopolysaccharide"
CSDB ID 5729 (all data & tools)
Compound ID: 818

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Structure type: oligomer
Reference(s) to other database(s): GlycomeDB:25793

Carbohydrate Research 2000, "Synthesis of neoglycoproteins containing D-glycero-D-talo-oct-2-ulopyranosylonic acid (Ko) ligands corresponding to core units from Burkholderia and Acinetobacter lipopolysaccharide"
CSDB ID 5730 (all data & tools)
Compound ID: 819

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Structure type: oligomer
Reference(s) to other database(s): GlycomeDB:25717

Carbohydrate Research 2000, "Synthesis of neoglycoproteins containing D-glycero-D-talo-oct-2-ulopyranosylonic acid (Ko) ligands corresponding to core units from Burkholderia and Acinetobacter lipopolysaccharide"
CSDB ID 5731 (all data & tools)
Compound ID: 1294

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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G40176QY, GlycomeDB:25355

Journal of Endotoxin Research 2003, "Lipopolysaccharide of Burkholderia cepacia complex"
CSDB ID 31608 (all data & tools)

European Journal of Biochemistry 1997, "Structural elucidation of two polysaccharides present in the lipopolysaccharide of a clinical isolate of Burkholderia cepacia"
CSDB ID 1210 (all data & tools)

Organic and Biomolecular Chemistry 2007, "En route to a carbohydrate-based vaccine against Burkholderia cepacia"
CSDB ID 21580 (all data & tools)

BOOK: Bacterial lipopolysaccharides: Structure, chemical synthesis, biogenesis and interaction with host cells; Eds.: Knirel YA, Valvano MA; Springer 2011, "Structure of O-antigens"
CSDB ID 27880 (all data & tools)

Natural Product Reports 2018, "Polysaccharides from Burkholderia species as targets for vaccine development, immunomodulation and chemical synthesis"
CSDB ID 12505 (all data & tools)
Compound ID: 1297

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Structure type: polymer chemical repeating unit
Compound class: EPS

Journal of Endotoxin Research 2003, "Lipopolysaccharide of Burkholderia cepacia complex"
CSDB ID 31611 (all data & tools)

Compound ID: 1298

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Compound ID: 1463

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Compound ID: 1464

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Compound ID: 2279

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Structure type: polymer chemical repeating unit ; 180000
Compound class: EPS

Carbohydrate Research 1996, "Structural studies of the acidic exopolysaccharide produced by a mucoid strain of Burkholderia cepacia, isolated from cystic fibrosis"
CSDB ID 1209 (all data & tools)
Compound ID: 829

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Structure type: polymer chemical repeating unit
Trivial name: common antigen, common polysaccharide antigen, A band polysaccharide, D-rhamnan, repeat unit of the lipopolysaccharide side-chain, A-band polysaccharide (A-PS), A-band polysaccharide
Compound class: O-polysaccharide, O-antigen, LPS, enterobacterial common antigen, CPA
Reference(s) to other database(s): GTC:G80135ZC, GlycomeDB:25893

European Journal of Biochemistry 1997, "Structural elucidation of two polysaccharides present in the lipopolysaccharide of a clinical isolate of Burkholderia cepacia"
CSDB ID 1313 (all data & tools)

Organic and Biomolecular Chemistry 2007, "En route to a carbohydrate-based vaccine against Burkholderia cepacia"
CSDB ID 22006 (all data & tools)

BOOK: Bacterial lipopolysaccharides: Structure, chemical synthesis, biogenesis and interaction with host cells; Eds.: Knirel YA, Valvano MA; Springer 2011, "Structure of O-antigens"
CSDB ID 27804 (all data & tools)

Natural Product Reports 2018, "Polysaccharides from Burkholderia species as targets for vaccine development, immunomodulation and chemical synthesis"
CSDB ID 12506 (all data & tools)
Compound ID: 2280

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Structure type: oligomer
Reference(s) to other database(s): GlycomeDB:25397

European Journal of Biochemistry 1997, "Structural elucidation of two polysaccharides present in the lipopolysaccharide of a clinical isolate of Burkholderia cepacia"
CSDB ID 1314 (all data & tools)
Compound ID: 828

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Structure type: oligomer
Trivial name: A-band polysaccharide (A-PS)
Compound class: O-polysaccharide, O-antigen, CPA
Reference(s) to other database(s): GTC:G12807PZ, GlycomeDB:3387

European Journal of Biochemistry 1997, "Structural elucidation of two polysaccharides present in the lipopolysaccharide of a clinical isolate of Burkholderia cepacia"
CSDB ID 1315 (all data & tools)

Compound ID: 1002

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Compound ID: 2281

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Structure type: polymer chemical repeating unit
Compound class: EPS
Reference(s) to other database(s): GTC:G04929OJ, GlycomeDB:25399

European Journal of Biochemistry 1999, "Structural elucidation of a novel exopolysaccharide produced by a mucoid clinical isolate of Burkholderia cepacia - Characterization of a trisubstituted glucuronic acid residue in a heptasaccharide repeating unit"
CSDB ID 1316 (all data & tools)
Compound ID: 2282

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Structure type: oligomer
Reference(s) to other database(s): GTC:G22564EK, GlycomeDB:12587

European Journal of Biochemistry 1999, "Structural elucidation of a novel exopolysaccharide produced by a mucoid clinical isolate of Burkholderia cepacia - Characterization of a trisubstituted glucuronic acid residue in a heptasaccharide repeating unit"
CSDB ID 1317 (all data & tools)
Compound ID: 2283

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Structure type: oligomer
Reference(s) to other database(s): GTC:G44071SV, GlycomeDB:25400

European Journal of Biochemistry 1999, "Structural elucidation of a novel exopolysaccharide produced by a mucoid clinical isolate of Burkholderia cepacia - Characterization of a trisubstituted glucuronic acid residue in a heptasaccharide repeating unit"
CSDB ID 1318 (all data & tools)
Compound ID: 3689

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Structure type: oligomer
Aglycon: BSA
Reference(s) to other database(s): GTC:G36348JQ, GlycomeDB:5576

Journal of Endotoxin Research 2002, "Monoclonal antibodies against 3-deoxy-a-D-manno-oct-2-ulosonic acid (Kdo) and D-glycero-D-talo-oct-2-ulosonic acid (Ko)"
CSDB ID 6291 (all data & tools)
Compound ID: 3690

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Structure type: oligomer
Aglycon: BSA
Reference(s) to other database(s): GTC:G95969AX, GlycomeDB:25717

Journal of Endotoxin Research 2002, "Monoclonal antibodies against 3-deoxy-a-D-manno-oct-2-ulosonic acid (Kdo) and D-glycero-D-talo-oct-2-ulosonic acid (Ko)"
CSDB ID 6495 (all data & tools)
Compound ID: 3691

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Structure type: oligomer
Aglycon: BSA
Reference(s) to other database(s): GTC:G64924JR, GlycomeDB:25793

Journal of Endotoxin Research 2002, "Monoclonal antibodies against 3-deoxy-a-D-manno-oct-2-ulosonic acid (Kdo) and D-glycero-D-talo-oct-2-ulosonic acid (Ko)"
CSDB ID 6496 (all data & tools)
Compound ID: 3692

a-Kdop-(2--/BSA/ Show graphically

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Structure type: monomer
Aglycon: BSA
Reference(s) to other database(s): GTC:G34165VZ, GlycomeDB:13262

Journal of Endotoxin Research 2002, "Monoclonal antibodies against 3-deoxy-a-D-manno-oct-2-ulosonic acid (Kdo) and D-glycero-D-talo-oct-2-ulosonic acid (Ko)"
CSDB ID 6497 (all data & tools)
Compound ID: 3693

a-Kop-(2--/BSA/ Show graphically

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Structure type: monomer
Aglycon: BSA
Reference(s) to other database(s): GTC:G84922UY, GlycomeDB:27044

Journal of Endotoxin Research 2002, "Monoclonal antibodies against 3-deoxy-a-D-manno-oct-2-ulosonic acid (Kdo) and D-glycero-D-talo-oct-2-ulosonic acid (Ko)"
CSDB ID 6498 (all data & tools)
Compound ID: 7639

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Structure type: oligomer
Aglycon: 3-(N-acetyl-L-cysteino)propyl
Reference(s) to other database(s): GTC:G51458WJ, GlycomeDB:35026

Organic and Biomolecular Chemistry 2007, "En route to a carbohydrate-based vaccine against Burkholderia cepacia"
CSDB ID 22007 (all data & tools)

Compound ID: 7757

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Compound ID: 2243

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Structure type: polymer chemical repeating unit
Trivial name: K-antigen, galactan-Kdo, Kdo-EPS
Compound class: CPS, EPS
Reference(s) to other database(s): GTC:G77110LE, GlycomeDB:25312

Mass Spectrometry Reviews 2009, "Analysis of carbohydrates and glycoconjugates by matrix-assisted laser desorption/ionization mass spectrometry: An update for 2003-2004"
CSDB ID 24007 (all data & tools)

Carbohydrate Research 2014, "Structural characterization of polysaccharides expressed by Burkholderia oklahomensis E0147"
CSDB ID 30137 (all data & tools)

Natural Product Reports 2018, "Polysaccharides from Burkholderia species as targets for vaccine development, immunomodulation and chemical synthesis"
CSDB ID 12475 (all data & tools)

BOOK: Comprehensive Glycoscience: From Chemistry to Systems Biology. Reference Module in Chemistry, Molecular Sciences and Chemical Engineering; Eds.: Barchi J, Kamerling H; Elsevier 2021, "Bacterial exopolysaccharides"
CSDB ID 6982 (all data & tools)
Compound ID: 549

-6)-b-D-Fruf-(2- Show graphically

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Structure type: homopolymer
Trivial name: levan, levan-type polysaccharide
Compound class: EPS, polysaccharide, fructan
Reference(s) to other database(s): GTC:G29465PK, GlycomeDB:9593

Mass Spectrometry Reviews 2009, "Analysis of carbohydrates and glycoconjugates by matrix-assisted laser desorption/ionization mass spectrometry: An update for 2003-2004"
CSDB ID 24008 (all data & tools)

Natural Product Reports 2018, "Polysaccharides from Burkholderia species as targets for vaccine development, immunomodulation and chemical synthesis"
CSDB ID 12480 (all data & tools)

Compound ID: 9320

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Compound ID: 1030

-6)-b-D-GlcpNAc-(1- Show graphically

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Structure type: homopolymer
Trivial name: poly-β-1,6-GlcNAc (PGA), biofilm, poly-b-(1-6)-N-acetyl-D-glucosamine (PNAG), poly-β-N-acetyl-glucosamine (PNAG), PNAG, poly-N-acetylglucosamine, PNAG
Compound class: CPS, EPS, O-polysaccharide, glucan, polysaccharide
Reference(s) to other database(s): GTC:G36952FI, GlycomeDB:11210

Applied and Environmental Microbiology 2011, "Characterization of the poly-b-1,6-N-Acetylglucosamine Polysaccharide Component of Burkholderia Biofilms"
CSDB ID 26393 (all data & tools)

Journal of Infectious Diseases 2012, "Targeting pan-resistant bacteria with antibodies to a broadly conserved surface polysaccharide expressed during infection"
CSDB ID 27320 (all data & tools)

Engineering (Beijing) 2024, "Antibodies targeting a conserved surface polysaccharide are protective against a wide range of microbial pathogens producing β-1–6-linked poly-N-acetylglucosamine (PNAG)"
CSDB ID 15645 (all data & tools)
Compound ID: 7098

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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G87187IQ, GlycomeDB:27848

Innate Immunity 2012, "Distinct carbohydrate and lipid-based molecular patterns within lipopolysaccharides from Burkholderia cepacia contribute to defense-associated differential gene expression in Arabidopsis thaliana"
CSDB ID 27240 (all data & tools)
Compound ID: 2368

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Structure type: oligomer
Compound class: inner core component
Reference(s) to other database(s): GlycomeDB:25652

Pure and Applied Chemistry 2012, "Synthesis of Lipid A and Inner Core LPS ligands containing 4-amino-4-deoxy-L-arabinose units"
CSDB ID 28692 (all data & tools)
Compound ID: 3724

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Structure type: polymer chemical repeating unit
Trivial name: succinoglycan
Compound class: EPS

Natural Product Reports 2018, "Polysaccharides from Burkholderia species as targets for vaccine development, immunomodulation and chemical synthesis"
CSDB ID 12477 (all data & tools)

Compound ID: 12955

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Compound ID: 12956

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Structure type: polymer chemical repeating unit
Trivial name: co-cepacian
Compound class: EPS
Reference(s) to other database(s): GTC:G86277RB

Natural Product Reports 2018, "Polysaccharides from Burkholderia species as targets for vaccine development, immunomodulation and chemical synthesis"
CSDB ID 12479 (all data & tools)

BOOK: Comprehensive Glycoscience: From Chemistry to Systems Biology. Reference Module in Chemistry, Molecular Sciences and Chemical Engineering; Eds.: Barchi J, Kamerling H; Elsevier 2021, "Bacterial exopolysaccharides"
CSDB ID 6985 (all data & tools)
Compound ID: 12957

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Structure type: polymer chemical repeating unit
Trivial name: PNAG
Compound class: EPS
Reference(s) to other database(s): GTC:G84392XC

Natural Product Reports 2018, "Polysaccharides from Burkholderia species as targets for vaccine development, immunomodulation and chemical synthesis"
CSDB ID 12481 (all data & tools)
Compound ID: 2799

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Structure type: polymer chemical repeating unit
Compound class: EPS

BOOK: Comprehensive Glycoscience: From Chemistry to Systems Biology. Reference Module in Chemistry, Molecular Sciences and Chemical Engineering; Eds.: Barchi J, Kamerling H; Elsevier 2021, "Bacterial exopolysaccharides"
CSDB ID 6770 (all data & tools)

Chinese Journal of Natural Medicines = Zhongguo Tianran Yaowu 2022, "Chemical approaches towards installation of rare functional groups in bacterial surface glycans"
CSDB ID 9131 (all data & tools)

Compound ID: 1819

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Compound ID: 15891

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Compound ID: 13145

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Expand this organism

2. (Organism ID: 22)

Escherichia coli

(NCBI TaxID 562, species name lookup)

Taxonomic group: bacteria
Phylum: Proteobacteria

The following compound(s) are assigned to this organism:

Compound ID: 38

Gal Show graphically

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Structure type: monomer
Reference(s) to other database(s): GTC:G52483PD

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1627 (all data & tools)
Compound ID: 39

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Structure type: monomer
Aglycon: O-para-nitrophenyl or S-para-nitrophenyl
Reference(s) to other database(s): GTC:G09546QO, GlycomeDB:3601

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1715 (all data & tools)
Compound ID: 40

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Structure type: monomer
Aglycon: para-nitrothiophenyl
Reference(s) to other database(s): GTC:G65889KE, GlycomeDB:115

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1717 (all data & tools)
Compound ID: 41

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Structure type: oligomer
Aglycon: para-nitrophenyl
Reference(s) to other database(s): GTC:G84224TW, GlycomeDB:118

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1719 (all data & tools)
Compound ID: 42

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Structure type: oligomer
Reference(s) to other database(s): GTC:G13745WN, GlycomeDB:1544

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1720 (all data & tools)
Compound ID: 43

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Structure type: oligomer
Reference(s) to other database(s): GTC:G75192NK, GlycomeDB:384

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1721 (all data & tools)
Compound ID: 44

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Structure type: oligomer
Reference(s) to other database(s): GTC:G09675VB, GlycomeDB:557

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1722 (all data & tools)
Compound ID: 45

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Structure type: oligomer
Reference(s) to other database(s): GTC:G40657ZV, GlycomeDB:172

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1723 (all data & tools)
Compound ID: 46

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Structure type: oligomer
Reference(s) to other database(s): GTC:G02909JE, GlycomeDB:439

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1724 (all data & tools)
Compound ID: 47

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Structure type: oligomer

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1725 (all data & tools)
Compound ID: 48

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Structure type: oligomer
Aglycon: (CH2)8CO2CH3 or para-nitrothiophenyl
Reference(s) to other database(s): GTC:G45315EX

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1726 (all data & tools)
Compound ID: 49

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Structure type: oligomer
Reference(s) to other database(s): GTC:G93268KU

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1728 (all data & tools)
Compound ID: 50

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Structure type: oligomer
Aglycon: p-nitrophenyl
Reference(s) to other database(s): GTC:G28052FT, GlycomeDB:327

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1729 (all data & tools)
Compound ID: 51

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Structure type: oligomer
Reference(s) to other database(s): GTC:G44617RE

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1730 (all data & tools)
Compound ID: 52

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Structure type: oligomer
Compound class: LPS
Reference(s) to other database(s): GTC:G26424YB, GlycomeDB:447

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1731 (all data & tools)
Compound ID: 53

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Structure type: oligomer
Reference(s) to other database(s): GTC:G46067UI

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1732 (all data & tools)
Compound ID: 54

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Structure type: oligomer
Aglycon: p-nitrophenyl
Reference(s) to other database(s): GTC:G54670RT

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1734 (all data & tools)
Compound ID: 55

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Structure type: oligomer
Reference(s) to other database(s): GTC:G09000WS, GlycomeDB:2520

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1735 (all data & tools)
Compound ID: 56

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Structure type: oligomer
Reference(s) to other database(s): GTC:G31262IS, GlycomeDB:998

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1736 (all data & tools)
Compound ID: 57

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Structure type: oligomer
Trivial name: lacto-N-biose
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G04616ST, GlycomeDB:11384

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1737 (all data & tools)
Compound ID: 58

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Structure type: oligomer
Aglycon: (CH2)2NHC(O)OCH2Ph
Reference(s) to other database(s): GTC:G00056MO, GlycomeDB:307

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1738 (all data & tools)
Compound ID: 59

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Structure type: oligomer
Trivial name: lacto-N-tetraose
Reference(s) to other database(s): GTC:G02782UU, GlycomeDB:965

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1739 (all data & tools)
Compound ID: 60

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Structure type: oligomer
Trivial name: Lewisa, Lewis a
Reference(s) to other database(s): GTC:G05450JY, GlycomeDB:1403

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1740 (all data & tools)
Compound ID: 61

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Structure type: oligomer
Reference(s) to other database(s): GTC:G67969CT, GlycomeDB:47

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1741 (all data & tools)
Compound ID: 62

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Structure type: oligomer
Aglycon: p-nitrophenyl
Reference(s) to other database(s): GTC:G23202WP

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1742 (all data & tools)
Compound ID: 63

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Structure type: oligomer
Aglycon: p-nitrophenyl
Reference(s) to other database(s): GTC:G63349JM

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1743 (all data & tools)
Compound ID: 64

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Structure type: oligomer
Aglycon: (CH2)8CO2CH3
Reference(s) to other database(s): GTC:G85343TN

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1744 (all data & tools)
Compound ID: 65

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Structure type: oligomer
Reference(s) to other database(s): GTC:G79160ZM, GlycomeDB:1428

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1745 (all data & tools)
Compound ID: 66

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Structure type: oligomer

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1746 (all data & tools)
Compound ID: 67

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Structure type: oligomer

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1747 (all data & tools)
Compound ID: 68

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Structure type: oligomer
Trivial name: globotriose
Reference(s) to other database(s): GTC:G07992YV, GlycomeDB:1306

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1748 (all data & tools)
Compound ID: 69

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Structure type: oligomer
Aglycon: (CH2)8CO2CH3
Reference(s) to other database(s): GTC:G46372KU

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1749 (all data & tools)
Compound ID: 70

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Structure type: oligomer
Trivial name: raffinose
Reference(s) to other database(s): GTC:G16195BQ, GlycomeDB:25474

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1750 (all data & tools)
Compound ID: 71

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Structure type: oligomer
Trivial name: stachyose
Reference(s) to other database(s): GTC:G99857RQ, GlycomeDB:25475

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1751 (all data & tools)
Compound ID: 72

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Structure type: oligomer
Reference(s) to other database(s): GTC:G50274CU

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1752 (all data & tools)
Compound ID: 73

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Structure type: oligomer
Reference(s) to other database(s): GTC:G29396CW, GlycomeDB:192

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1753 (all data & tools)
Compound ID: 74

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Structure type: oligomer
Reference(s) to other database(s): GTC:G22699IF

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1754 (all data & tools)
Compound ID: 75

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Structure type: oligomer
Reference(s) to other database(s): GTC:G13668YX

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1755 (all data & tools)

Compound ID: 76

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Compound ID: 77

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Compound ID: 78

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Compound ID: 79

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Compound ID: 80

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Compound ID: 81

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Compound ID: 82

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Structure type: oligomer
Aglycon: p-nitrophenyl
Reference(s) to other database(s): GTC:G06239NA, GlycomeDB:599

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1762 (all data & tools)
Compound ID: 83

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Structure type: oligomer
Aglycon: p-nitrophenyl
Reference(s) to other database(s): GTC:G64943CI, GlycomeDB:3196

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1763 (all data & tools)
Compound ID: 84

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Structure type: oligomer
Aglycon: p-nitrophenyl
Reference(s) to other database(s): GTC:G69538FB, GlycomeDB:5169

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 1764 (all data & tools)
Compound ID: 129

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Structure type: polymer chemical repeating unit
Trivial name: ECA, ECA LPS, enterobacterial common antigen (ECA)
Compound class: enterobacterial common antigen
Reference(s) to other database(s): GTC:G63996VH, GlycomeDB:7812

Carbohydrate Research 1995, "Determination by NMR spectroscopy of the structure and conformational features of the enterobacterial common antigen isolated from Escherichia coli"
CSDB ID 1667 (all data & tools)

FEMS Microbiology Reviews 2000, "Psudomonas aeruginosa B-band lipopolysaccharide genes wbpA and wbpI and their Escherichia coli homologues wecC and wecB are not functionally interchangeable"
CSDB ID 6504 (all data & tools)

Future Microbiology 2016, "The first sugar of the repeat units is essential for the Wzy polymerase activity and elongation of the O-antigen lipopolysaccharide"
CSDB ID 11789 (all data & tools)

Compound ID: 160

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Compound ID: 188

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Compound ID: 179

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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G47888NW, GlycomeDB:25535

European Journal of Biochemistry 2002, "The structure of the O-chain of the lipopolysaccharide of a prototypal diarrheagenic strain of Hafnia alvei that has characteristics of a new species under the genus Escherichia"
CSDB ID 2042 (all data & tools)

Compound ID: 314

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Compound ID: 375

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Structure type: oligomer
Compound class: lipid A

Journal of Biological Chemistry 2001, "Accumulation of a polyisoprene-linked amino sugar in polymyxin resistant Salmonella typhimurium and Escherichia coli. Structural characterization and transfer to lipid A in the periplasm"
CSDB ID 5231 (all data & tools)

Compound ID: 376

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Compound ID: 400

P-8)-Kdo Show graphically

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Structure type: monomer
Reference(s) to other database(s): GTC:G70705ZI, GlycomeDB:37103

Journal of Biological Chemistry 2002, "KpsF is the arabinose 5-phosphate isomerase required for 3-deoxy-D-manno-octulosonic acid (Kdo) biosynthesis and for both lipooligosaccharide assembly and capsular polysaccharide expression in Neisseria meningitidis"
CSDB ID 5247 (all data & tools)
Compound ID: 401

Kdo Show graphically

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Structure type: monomer
Reference(s) to other database(s): GTC:G69279ZI, GlycomeDB:37740

Journal of Biological Chemistry 2002, "KpsF is the arabinose 5-phosphate isomerase required for 3-deoxy-D-manno-octulosonic acid (Kdo) biosynthesis and for both lipooligosaccharide assembly and capsular polysaccharide expression in Neisseria meningitidis"
CSDB ID 5408 (all data & tools)
Compound ID: 402

Kdop-(2--P--5)--C Show graphically

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Structure type: monomer

Journal of Biological Chemistry 2002, "KpsF is the arabinose 5-phosphate isomerase required for 3-deoxy-D-manno-octulosonic acid (Kdo) biosynthesis and for both lipooligosaccharide assembly and capsular polysaccharide expression in Neisseria meningitidis"
CSDB ID 5409 (all data & tools)

Compound ID: 379

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Compound ID: 426

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Compound ID: 1028

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Compound ID: 1063

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Compound ID: 1064

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Compound ID: 1065

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Structure type: oligomer
Aglycon: inner core
Trivial name: outer R4 core oligosaccharide
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G14695QL, GlycomeDB:27159

FEMS Immunology and Medical Microbiology 1996, "Serological characterisation of anti-endotoxin sera directed against the conjugates of oligosaccharide core of Escherichia coli type R1, R2, R3, J5 and Salmonella Ra with tetanus toxoid"
CSDB ID 7535 (all data & tools)
Compound ID: 1242

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Structure type: monomer

Journal of Infectious Diseases 2001, "Natural development of antibodies to pneumococcal capsular polysaccharides depends on the serotype: Association with pneumococcal carriage and acute otitis media in young children"
CSDB ID 8333 (all data & tools)

Compound ID: 1340

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Compound ID: 1352

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Compound ID: 1454

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Structure type: oligomer
Reference(s) to other database(s): GTC:G10794OA, GlycomeDB:170

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 8942 (all data & tools)
Compound ID: 1455

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Structure type: oligomer
Aglycon: p-nitrophenyl
Trivial name: common epithope
Reference(s) to other database(s): GTC:G84224TW, GlycomeDB:118

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 9073 (all data & tools)
Compound ID: 1456

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Structure type: oligomer
Aglycon: p-nitrophenyl
Trivial name: common epithope
Reference(s) to other database(s): GTC:G00055MO, GlycomeDB:228

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 9074 (all data & tools)
Compound ID: 1457

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Structure type: oligomer
Aglycon: p-nitrophenyl
Trivial name: common epithope
Reference(s) to other database(s): GTC:G21469TE, GlycomeDB:1877

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 9075 (all data & tools)
Compound ID: 1458

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Structure type: oligomer
Aglycon: p-nitrophenyl
Trivial name: common epithope
Reference(s) to other database(s): GTC:G33476GF, GlycomeDB:1436

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 9078 (all data & tools)
Compound ID: 1459

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Structure type: oligomer
Aglycon: p-nitrophenyl
Trivial name: common epithope
Reference(s) to other database(s): GTC:G67272YR, GlycomeDB:16508

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 9079 (all data & tools)
Compound ID: 1460

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Structure type: oligomer
Aglycon: p-nitrophenyl
Trivial name: common epithope
Reference(s) to other database(s): GTC:G79307NW, GlycomeDB:27410

Glycobiology 1999, "High-level expression of the Neisseria meningitidis lgtA gene in Escherichia coli and characterization of the encoded N-acetylglucosaminyltransferase as a useful catalyst in the synthesis of GlcNAcb1→3Gal and GalNAcb1-3Gal linkages"
CSDB ID 9080 (all data & tools)
Compound ID: 1030

-6)-b-D-GlcpNAc-(1- Show graphically

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Structure type: homopolymer
Trivial name: poly-β-1,6-GlcNAc (PGA), biofilm, poly-b-(1-6)-N-acetyl-D-glucosamine (PNAG), poly-β-N-acetyl-glucosamine (PNAG), PNAG, poly-N-acetylglucosamine, PNAG
Compound class: CPS, EPS, O-polysaccharide, glucan, polysaccharide
Reference(s) to other database(s): GTC:G36952FI, GlycomeDB:11210

Journal of Bacteriology 2004, "The pgaABCD locus of Escherichia coli promotes the synthesis of a polysaccharide adhesin required for biofilm formation"
CSDB ID 8984 (all data & tools)

Journal of Bacteriology 2005, "Depolymerization of b-1,6-N-acetyl-D-glucosamine disrupts the integrity of diverse bacterial biofilms"
CSDB ID 10059 (all data & tools)

Molecular Microbiology 2005, "CsrA post-transcriptionally represses pgaABCD, responsible for synthesis of a biofilm polysaccharide adhesin of Escherichia coli"
CSDB ID 10642 (all data & tools)

Organic and Biomolecular Chemistry 2012, "Synthesis and evaluation of inhibitors of E. coli PgaB, a polysaccharide de-N-acetylase involved in biofilm formation"
CSDB ID 29938 (all data & tools)

Trends in Microbiology 2013, "Synthase-dependent exopolysaccharide secretion in Gram-negative bacteria"
CSDB ID 29388 (all data & tools)

PLoS Pathogens 2014, "P. aeruginosa SGNH hydrolase-like rroteins AlgJ and AlgX have similar topology but separate and distinct roles in alginate acetylation"
CSDB ID 46402 (all data & tools)

Engineering (Beijing) 2024, "Antibodies targeting a conserved surface polysaccharide are protective against a wide range of microbial pathogens producing β-1–6-linked poly-N-acetylglucosamine (PNAG)"
CSDB ID 15645 (all data & tools)

Compound ID: 1602

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Compound ID: 1779

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Compound ID: 1815

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Structure type: cyclic polymer repeating unit ; n=4-6
Trivial name: Enterobacterial common antigen
Reference(s) to other database(s): GTC:G63996VH, GlycomeDB:7812

Journal of Biomolecular NMR 2004, "Cyclic enterobacterial common antigen: Potential contaminant of bacterially expressed protein preparations"
CSDB ID 9532 (all data & tools)

Compound ID: 1600

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Compound ID: 1817

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Compound ID: 1818

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Compound ID: 2056

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Structure type: oligomer
Aglycon: lipid A
Trivial name: inner core region, outer core region
Compound class: core oligosaccharide, LPS
Reference(s) to other database(s): GTC:G18751QK, GlycomeDB:26995

European Journal of Biochemistry 2000, "Comparative functional characterization in vitro of heptopyranosyltransferase I (WaaC) and II (WaaF) from Escherichia coli"
CSDB ID 443 (all data & tools)
Compound ID: 942

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Structure type: oligomer
Aglycon: lipid A
Trivial name: outer core region
Compound class: core oligosaccharide, LOS, LPS
Reference(s) to other database(s): GTC:G36348JQ, GlycomeDB:5576

Molecular Microbiology 2000, "Molecular structure of bacterial endotoxin (Escherichia coli Re lipopolysaccharide): implications for formation of a novel heterogeneous lattice structure"
CSDB ID 852 (all data & tools)

Journal of Biological Chemistry 1995, "Inhibition of lipopolysaccharide biosynthesis and cell growth following inactivation of the kdtA gene in Escherichia coli"
CSDB ID 6252 (all data & tools)

Biochemistry 2005, "A Slow, Tight-Binding Inhibitor of the Zinc-Dependent Deacetylase LpxC of Lipid A Biosynthesis with Antibiotic Activity Comparable to Ciprofloxacin"
CSDB ID 10584 (all data & tools)

Journal of Biological Chemistry 2013, "The origin of 8-amino-3,8-dideoxy-D-manno-octulosonic acid (Kdo8N) in the lipopolysaccharide of Shewanella oneidensis"
CSDB ID 29489 (all data & tools)
Compound ID: 2262

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Structure type: monomer
Trivial name: ADP-β-L-glycero-D-manno-heptose, ADP-L-glycero-β-D-manno-heptose
Reference(s) to other database(s): GlycomeDB:25190

Journal of Biological Chemistry 2001, "Biosynthesis of nucleotide-activated D-glycero-D-manno-heptose"
CSDB ID 899 (all data & tools)

Bioorganic and Medicinal Chemistry 2008, "Towards Gram-negative antivirulence drugs: New inhibitors of HldE kinase"
CSDB ID 23513 (all data & tools)
Compound ID: 2264

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Structure type: monomer
Trivial name: ADP-β-D-glycero-D-manno-heptose
Reference(s) to other database(s): GlycomeDB:25347

Journal of Biological Chemistry 2001, "Biosynthesis of nucleotide-activated D-glycero-D-manno-heptose"
CSDB ID 944 (all data & tools)
Compound ID: 2265

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Structure type: monomer
Trivial name: component of core oligosaccharide
Reference(s) to other database(s): GlycomeDB:25190

Journal of Bacteriology 2002, "Biosynthesis pathway of ADP-L-glycero-b-D-manno-heptose in Escherichia coli"
CSDB ID 940 (all data & tools)

Journal of Molecular Biology 2006, "Structure of the Escherichia coli Heptosyltransferase WaaC: Binary Complexes with ADP AND ADP-2-deoxy-2-fluoro Heptose"
CSDB ID 20080 (all data & tools)
Compound ID: 2362

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Structure type: polymer chemical repeating unit
Trivial name: murein

Microbiology 1996, "A hypothetical holoenzyme involved in the replication of the murein sacculus of Eschereichia coli"
CSDB ID 2439 (all data & tools)
Compound ID: 2903

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Structure type: oligomer
Aglycon: (CH2)3S(CH2)2NHCSNH-BSA
Reference(s) to other database(s): GTC:G36348JQ, GlycomeDB:5576

Journal of Endotoxin Research 2002, "A novel strategy for the synthesis of neoglycoconjugates from deacylated deep rough lipopolysaccharides"
CSDB ID 3724 (all data & tools)
Compound ID: 2907

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Structure type: oligomer
Aglycon: (CH2)3S(CH2)2NHCSNH-BSA
Reference(s) to other database(s): GTC:G30068VP, GlycomeDB:5771

Journal of Endotoxin Research 2002, "A novel strategy for the synthesis of neoglycoconjugates from deacylated deep rough lipopolysaccharides"
CSDB ID 3806 (all data & tools)
Compound ID: 2941

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Structure type: oligomer
Reference(s) to other database(s): GTC:G06967ER

Journal of Endotoxin Research 2002, "A novel strategy for the synthesis of neoglycoconjugates from deacylated deep rough lipopolysaccharides"
CSDB ID 3807 (all data & tools)
Compound ID: 2942

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Structure type: oligomer
Reference(s) to other database(s): GTC:G03089SU

Journal of Endotoxin Research 2002, "A novel strategy for the synthesis of neoglycoconjugates from deacylated deep rough lipopolysaccharides"
CSDB ID 3808 (all data & tools)
Compound ID: 2943

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Structure type: oligomer
Reference(s) to other database(s): GTC:G21998JP

Journal of Endotoxin Research 2002, "A novel strategy for the synthesis of neoglycoconjugates from deacylated deep rough lipopolysaccharides"
CSDB ID 3809 (all data & tools)

Compound ID: 2944

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Compound ID: 2945

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Structure type: oligomer
Reference(s) to other database(s): GTC:G82767JW

Journal of Endotoxin Research 2002, "A novel strategy for the synthesis of neoglycoconjugates from deacylated deep rough lipopolysaccharides"
CSDB ID 3811 (all data & tools)
Compound ID: 2946

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Structure type: oligomer
Reference(s) to other database(s): GTC:G70367QE

Journal of Endotoxin Research 2002, "A novel strategy for the synthesis of neoglycoconjugates from deacylated deep rough lipopolysaccharides"
CSDB ID 3812 (all data & tools)
Compound ID: 3654

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Structure type: oligomer
Aglycon: Fig. 1
Reference(s) to other database(s): GTC:G40144CS, GlycomeDB:12750

Glycoconjugate Journal 1999, "The living factory: In vivo production of N-acetyllactosamine containing carbohydrates in E-coli"
CSDB ID 6257 (all data & tools)

Compound ID: 3725

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Compound ID: 3726

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Compound ID: 3735

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Structure type: oligomer
Trivial name: lacto-N-neofucopentaose
Reference(s) to other database(s): GTC:G76691AS, GlycomeDB:1599

Glycoconjugate Journal 2001, "In vivo fucosylation of lacto-N-neotetraose and lacto-N-neohexaose by heterologous expression of Helicobacter pylori a-1,3 fucosyltransferase in engineered Escherichia coli"
CSDB ID 6596 (all data & tools)
Compound ID: 3736

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Structure type: oligomer
Trivial name: lacto-N-neodifucohexaose
Reference(s) to other database(s): GTC:G63389KA, GlycomeDB:5686

Glycoconjugate Journal 2001, "In vivo fucosylation of lacto-N-neotetraose and lacto-N-neohexaose by heterologous expression of Helicobacter pylori a-1,3 fucosyltransferase in engineered Escherichia coli"
CSDB ID 6616 (all data & tools)

Compound ID: 3737

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Compound ID: 1598

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Compound ID: 3778

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Compound ID: 3783

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Compound ID: 3784

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Compound ID: 3872

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Compound ID: 3873

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Compound ID: 3875

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Structure type: oligomer
Aglycon: (1->3) inner core
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G14695QL

Progress in Clinical and Biological Research 1998, "Core structures of enterobacterial lipopolysaccharides"
CSDB ID 31766 (all data & tools)

Compound ID: 4008

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Compound ID: 4245

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Compound ID: 4252

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Compound ID: 4300

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Compound ID: 4313

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Compound ID: 4480

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Structure type: oligomer
Compound class: peptidoglycan
Reference(s) to other database(s): CCSD:35779

BOOK: Antibiotics and antiviral compounds: chemical synthesis and modification; Eds.: Krohn K, Kirst HA, Maag H; Weinheim, New York: VCH 1993, "Transglycosylase inhibition"
CSDB ID 103840 (all data & tools)
Compound ID: 266

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Structure type: suggested polymer biological repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G42214IC, GlycomeDB:25593

Biochemistry 1993, "Probing the combining site of an anti-carbohydrate antibody by saturation-mutagenesis: role of the heavy-chain CDR3 residues"
CSDB ID 107890 (all data & tools)
Compound ID: 4436

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Structure type: polymer chemical repeating unit
Trivial name: colominic acid, Japanese common char (Salvelinus leucomaenis pluvius)
Compound class: CPS, O-glycoprotein, polysialate
Reference(s) to other database(s): GTC:G74009LP, GlycomeDB:660

Biopolymers 1993, "The preparation and characterization of a twin-tailed, lipid-linked polysialic acid"
CSDB ID 111111 (all data & tools)
Compound ID: 5524

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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G50829SS, GlycomeDB:7632

European Journal of Biochemistry 1973, "Enzymic degradation of O-antigenic lipopolysaccharides by coliphage OMEGA 8"
CSDB ID 122393 (all data & tools)
Compound ID: 5773

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Structure type: oligomer
Aglycon: Ceramide
Trivial name: glycosphingolipid
Compound class: glycolipid
Reference(s) to other database(s): GlycomeDB:9468

Infection and Immunity 1981, "Glycolipid receptors for uropathogenic Escherichia coli on human erythrocytes and uroepithelial cells"
CSDB ID 130161 (all data & tools)
Compound ID: 5779

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Structure type: oligomer
Reference(s) to other database(s): GTC:G59222MP

Infection and Immunity 1989, "Ganglioside epitope recognized by K99 fimbriae from enterotoxigenic Escherichia coli"
CSDB ID 130227 (all data & tools)
Compound ID: 5780

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Structure type: oligomer
Aglycon: Ceramide
Trivial name: GM3, II3NeuAc-Lac-Cer
Compound class: ganglioside
Reference(s) to other database(s): GlycomeDB:146

Infection and Immunity 1989, "Ganglioside epitope recognized by K99 fimbriae from enterotoxigenic Escherichia coli"
CSDB ID 130228 (all data & tools)
Compound ID: 5781

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Structure type: oligomer
Aglycon: Ceramide
Trivial name: GM3-NeuGc, II3NeuGc-Lac-Cer
Compound class: ganglioside

Infection and Immunity 1989, "Ganglioside epitope recognized by K99 fimbriae from enterotoxigenic Escherichia coli"
CSDB ID 130229 (all data & tools)
Compound ID: 5782

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Structure type: oligomer
Aglycon: Ceramide
Trivial name: GM3-Neu4Ac5Gc
Compound class: ganglioside

Infection and Immunity 1989, "Ganglioside epitope recognized by K99 fimbriae from enterotoxigenic Escherichia coli"
CSDB ID 130230 (all data & tools)
Compound ID: 5783

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Structure type: oligomer
Aglycon: Ceramide
Trivial name: 3'-LM1-NeuGc
Compound class: ganglioside

Infection and Immunity 1989, "Ganglioside epitope recognized by K99 fimbriae from enterotoxigenic Escherichia coli"
CSDB ID 130232 (all data & tools)
Compound ID: 5784

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Structure type: oligomer
Aglycon: Ceramide
Trivial name: VI3NeuGc-nLc6-Cer
Compound class: ganglioside

Infection and Immunity 1989, "Ganglioside epitope recognized by K99 fimbriae from enterotoxigenic Escherichia coli"
CSDB ID 130233 (all data & tools)
Compound ID: 5951

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Structure type: oligomer
Aglycon: (P->P) C55-P, (->1) undecaprenyl monophosphate
Trivial name: enterobacterial common antigen
Compound class: LPS
Reference(s) to other database(s): GlycomeDB:10706

Journal of Biological Chemistry 1990, "Biosynthesis of enterobacterial common antigen in Escherichia coli. Biochemical characterization of Tn10 insertion mutants defective in enterobacterial common antigen synthesis"
CSDB ID 135922 (all data & tools)
Compound ID: 5954

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Structure type: oligomer
Compound class: peptidoglycan
Reference(s) to other database(s): GTC:G84834YO

Journal of Biological Chemistry 1990, "Growth pattern of the murein sacculus of Escherichia coli"
CSDB ID 135959 (all data & tools)
Compound ID: 5971

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Structure type: oligomer
Trivial name: muramyl peptide
Compound class: peptidoglycan
Reference(s) to other database(s): CCSD:49380

Journal of Biological Chemistry 1992, "A murein hydrolase is the specific target of Bulgecin in Escherichia coli"
CSDB ID 136414 (all data & tools)

Microbiology 1994, "Alterations of murein structure and of penicillin-binding proteins in minicells from Escherichia coli"
CSDB ID 143645 (all data & tools)

Compound ID: 6022

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Compound ID: 6053

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Structure type: oligomer
Compound class: LPS
Reference(s) to other database(s): GTC:G89420DK, GlycomeDB:11342

Journal of Chromatography 1986, "Quantification of 2-keto-3-deoxyoctonate in (lipo)polysaccharides by methanolytic release, trifluoroacetylation and capillary gas chromatography"
CSDB ID 138790 (all data & tools)
Compound ID: 6054

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Structure type: oligomer
Compound class: LPS
Reference(s) to other database(s): GTC:G07426IU, GlycomeDB:11343

Journal of Chromatography 1986, "Quantification of 2-keto-3-deoxyoctonate in (lipo)polysaccharides by methanolytic release, trifluoroacetylation and capillary gas chromatography"
CSDB ID 138791 (all data & tools)

Compound ID: 6114

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Compound ID: 6115

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Compound ID: 6116

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Compound ID: 5969

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Compound ID: 5685

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Compound ID: 6117

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Compound ID: 2197

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Structure type: oligomer
Reference(s) to other database(s): GTC:G09579CP

Journal of Organic Chemistry 1994, "Large scale production of recombinant a-1,2-mannosyltransferase from E. coli for the study of acceptor specificity and use of the recombinant whole cells in synthesis"
CSDB ID 141618 (all data & tools)
Compound ID: 6120

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Structure type: oligomer
Reference(s) to other database(s): GlycomeDB:278

Journal of Organic Chemistry 1994, "Large scale production of recombinant a-1,2-mannosyltransferase from E. coli for the study of acceptor specificity and use of the recombinant whole cells in synthesis"
CSDB ID 141619 (all data & tools)
Compound ID: 6121

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Structure type: oligomer
Compound class: O-glycoprotein

Journal of Organic Chemistry 1994, "Large scale production of recombinant a-1,2-mannosyltransferase from E. coli for the study of acceptor specificity and use of the recombinant whole cells in synthesis"
CSDB ID 141631 (all data & tools)
Compound ID: 6122

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Structure type: oligomer
Compound class: O-glycoprotein

Journal of Organic Chemistry 1994, "Large scale production of recombinant a-1,2-mannosyltransferase from E. coli for the study of acceptor specificity and use of the recombinant whole cells in synthesis"
CSDB ID 141633 (all data & tools)

Compound ID: 6155

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Compound ID: 6156

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Structure type: oligomer
Compound class: peptidoglycan
Reference(s) to other database(s): CCSD:49379

Microbiology 1994, "Alterations of murein structure and of penicillin-binding proteins in minicells from Escherichia coli"
CSDB ID 143643 (all data & tools)
Compound ID: 6157

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Structure type: oligomer
Compound class: peptidoglycan
Reference(s) to other database(s): CCSD:49381

Microbiology 1994, "Alterations of murein structure and of penicillin-binding proteins in minicells from Escherichia coli"
CSDB ID 143644 (all data & tools)
Compound ID: 4415

-3)-b-D-Glcp-(1- Show graphically

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Structure type: homopolymer
Trivial name: glucan, β-1,3-glucan, curdlan, curdlan-type polysaccharide 13140, paramylon, curdlan, laminarin, β-glucan, curdlan, β-(1,3)-glucan, β-(1,3)-glucan, curdlan, curdlan, β-1,3-glucan, paramylon, reserve polysaccharide, b-glucan, β-1,3-D-glucan, laminaran, botryosphaeran, laminaran type β-D-glucan, latiglucan I, pachymaran, Curdlan, zymosan A, β-glucan, curdlan, laminarin, zymosan, zymosan, glucan particles, zymosan, β-(1-3)-glucan, β-(1,3)-glucan, β-(1,3)glucan, pachymaran, D-glucan (DPn)540, pachyman, laminaran, curdlan, zymosan, zymosan, β-(1,3)-glucan, zymosan A, zymosan, β-1,3-glucan, curdlan, β-1,3-glucan, curdlan, β-1,3-glucan, curdlan, pachyman, β-(1,3)-glucan, curdlan, callose, a water-insoluble β-(1→3)-glucan, fermentum β-polysaccharide, water-insoluble glucan, alkali-soluble β-glucan (PeA3), alkali-soluble polysaccharide (PCAP), callose, laminarin
Compound class: EPS, O-polysaccharide, cell wall polysaccharide, lipophosphoglycan, glycoprotein, LPG, glucan, polysaccharide, glycoside, β-glucan, β3-glucan, cell wall glucan
Reference(s) to other database(s): GTC:G51056AN, GlycomeDB:157, CCSD:50049, CBank-STR:4225, CA-RN: 51052-65-4, GenDB:FJ3380871.1

Microbiology 1995, "Four glucosyltransferases, GtfJ, GtfK, GtfL and GtfM, from Streptococcus salivarius ATCC 25975"
CSDB ID 143679 (all data & tools)
Compound ID: 6167

-6)-b-D-Glcp-(1- Show graphically

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Structure type: homopolymer
Trivial name: pustulan, β-1,6-glucan, β-1,6-D-glucan, β(1-6)-D-glucan, β-(1,6)-glucan, lasiodiplodan, pustulan, β-(1,6)-glucan, lasiodiplodan, β-(1,6)-glucan, β-(1,6)-glucan, lasiodiplodan, pustulan, β-1,6-glucan, β-(1,6)-glucan, pustulan, β-(1→6)-glucan PCPS, water-soluble glucan (PS-I)
Compound class: EPS, O-polysaccharide, cell wall polysaccharide, glycoprotein, glucan, polysaccharide, cell wall glucoprotein
Reference(s) to other database(s): GTC:G26777BZ, GlycomeDB:863, CCSD:50854, CBank-STR:4234

Microbiology 1995, "Four glucosyltransferases, GtfJ, GtfK, GtfL and GtfM, from Streptococcus salivarius ATCC 25975"
CSDB ID 143680 (all data & tools)
Compound ID: 6168

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Structure type: polymer chemical repeating unit
Reference(s) to other database(s): GTC:G73210JL, GlycomeDB:12038

Microbiology 1995, "Four glucosyltransferases, GtfJ, GtfK, GtfL and GtfM, from Streptococcus salivarius ATCC 25975"
CSDB ID 143681 (all data & tools)
Compound ID: 6205

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Structure type: oligomer
Compound class: LPS
Reference(s) to other database(s): GTC:G06373VZ, GlycomeDB:12093

Molecular Microbiology 1993, "The genus-specific lipopolysaccharide epitope of Chlamydia is assembled in C. psittaci and C. trachomatis by glycosyltransferases of low homology"
CSDB ID 144075 (all data & tools)
Compound ID: 6242

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Structure type: oligomer

Science 1993, "A covalent enzyme-substrate intermediate with saccharide distortion in a mutant T4 lysozyme"
CSDB ID 148381 (all data & tools)

Compound ID: 6332

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Compound ID: 6344

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Compound ID: 6466

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Compound ID: 844

-8)-a-Neup5Ac-(2- Show graphically

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Structure type: homopolymer
Trivial name: colominic acid sodium salt, colominic acid, type B polysaccharide, polysialic acid, PSA, oligosaccharide repeating unit, α-2,8-linked polysialic acid
Compound class: CPS, O-polysaccharide, K-antigen, O-antigen
Reference(s) to other database(s): GTC:G30588ZL, GlycomeDB:677

Biochemical and Biophysical Research Communications 1994, "Regulation of alternative pathway complement activation by glycosaminoglycans: specificity of the polyanion binding site on Factor H"
CSDB ID 105693 (all data & tools)

Frontiers in Immunology 2014, "Crossroads between Bacterial and Mammalian Glycosyltransferases"
CSDB ID 30221 (all data & tools)
Compound ID: 6551

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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G97024RO, GlycomeDB:28657

Carbohydrate Research 1994, "Structural studies of the Escherichia coli O90 O-antigen polysaccharide"
CSDB ID 218176 (all data & tools)

Compound ID: 6658

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Compound ID: 6673

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Compound ID: 6674

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Compound ID: 6689

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Compound ID: 6938

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Compound ID: 6939

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Compound ID: 6940

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Compound ID: 7089

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Structure type: oligomer
Trivial name: hyaluronan
Reference(s) to other database(s): GTC:G30666MK, GlycomeDB:17783

Carbohydrate Research 2006, "Complete assignment of hyaluronan oligosaccharides up to hexasaccharides"
CSDB ID 20007 (all data & tools)
Compound ID: 7090

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Structure type: oligomer
Trivial name: hyaluronan, polysaccharide peptide HAd
Compound class: PSP
Reference(s) to other database(s): GTC:G86299UP, GlycomeDB:19498

Carbohydrate Research 2006, "Complete assignment of hyaluronan oligosaccharides up to hexasaccharides"
CSDB ID 20301 (all data & tools)
Compound ID: 7091

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Structure type: oligomer
Trivial name: hyaluronan
Reference(s) to other database(s): GTC:G51352HP, GlycomeDB:17865

Carbohydrate Research 2006, "Complete assignment of hyaluronan oligosaccharides up to hexasaccharides"
CSDB ID 20302 (all data & tools)
Compound ID: 7092

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Structure type: oligomer
Trivial name: hyaluronan
Reference(s) to other database(s): GTC:G68185CW

Carbohydrate Research 2006, "Complete assignment of hyaluronan oligosaccharides up to hexasaccharides"
CSDB ID 20303 (all data & tools)
Compound ID: 7093

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Structure type: oligomer
Trivial name: hyaluronan
Reference(s) to other database(s): GTC:G58804BL

Carbohydrate Research 2006, "Complete assignment of hyaluronan oligosaccharides up to hexasaccharides"
CSDB ID 20304 (all data & tools)
Compound ID: 7094

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Structure type: oligomer
Trivial name: hyaluronan
Reference(s) to other database(s): GTC:G20544UR

Carbohydrate Research 2006, "Complete assignment of hyaluronan oligosaccharides up to hexasaccharides"
CSDB ID 20305 (all data & tools)
Compound ID: 7095

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Structure type: oligomer
Trivial name: hyaluronan

Carbohydrate Research 2006, "Complete assignment of hyaluronan oligosaccharides up to hexasaccharides"
CSDB ID 20306 (all data & tools)
Compound ID: 3699

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Structure type: oligomer
Aglycon: lipid IVA
Trivial name: intermediate Kdo2-lipidIVA
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G36348JQ, GlycomeDB:5576

Journal of Biological Chemistry 2006, "Expression Cloning of Three Rhizobium leguminosarum Lipopolysaccharide Core Galacturonosyltransferases"
CSDB ID 20324 (all data & tools)
Compound ID: 7125

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Structure type: oligomer
Aglycon: lipid IVA
Trivial name: intermediate lipid A
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G98894HY, GlycomeDB:27926

Journal of Biological Chemistry 2006, "Expression Cloning of Three Rhizobium leguminosarum Lipopolysaccharide Core Galacturonosyltransferases"
CSDB ID 20325 (all data & tools)

Compound ID: 7126

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Compound ID: 7127

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Compound ID: 7158

a-D-Manp-(1-P Show graphically

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Structure type: monomer
Trivial name: componente of O-antigen, D-mannose-1-phosphate
Reference(s) to other database(s): GlycomeDB:471

Protein Science 2006, "The structure of GDP-4-keto-6-deoxy-D-mannose-3-dehydratase: A unique coenzyme B6-dependent enzyme"
CSDB ID 20067 (all data & tools)
Compound ID: 7159

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Structure type: monomer
Trivial name: componente of O-antigen, GDP-mannose, GDP-α-D-mannose, GDP-D-Man
Compound class: nucleoside diphosphate sugar

Protein Science 2006, "The structure of GDP-4-keto-6-deoxy-D-mannose-3-dehydratase: A unique coenzyme B6-dependent enzyme"
CSDB ID 20353 (all data & tools)
Compound ID: 7160

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Structure type: monomer
Trivial name: componente of O-antigen
Compound class: nucleoside diphosphate sugar

Protein Science 2006, "The structure of GDP-4-keto-6-deoxy-D-mannose-3-dehydratase: A unique coenzyme B6-dependent enzyme"
CSDB ID 20354 (all data & tools)
Compound ID: 7161

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Structure type: monomer
Trivial name: componente of O-antigen, GDP-6-deoxy-D-lyxo-hexos-4-ulose
Compound class: nucleoside diphosphate sugar

Protein Science 2006, "The structure of GDP-4-keto-6-deoxy-D-mannose-3-dehydratase: A unique coenzyme B6-dependent enzyme"
CSDB ID 20355 (all data & tools)
Compound ID: 1606

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Structure type: monomer
Trivial name: componente of O-antigen, GDP-L-colitose
Compound class: nucleoside diphosphate sugar

Protein Science 2006, "The structure of GDP-4-keto-6-deoxy-D-mannose-3-dehydratase: A unique coenzyme B6-dependent enzyme"
CSDB ID 20356 (all data & tools)
Compound ID: 7224

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Structure type: oligomer
Aglycon: lipid A
Trivial name: Kdo2-lipid A
Reference(s) to other database(s): GTC:G47854XE, GlycomeDB:27878

Journal of Lipid Research 2006, "Kdo2-lipid A of Escherichia coli, a defined endotoxin that activates macrophages via TLR-4"
CSDB ID 20121 (all data & tools)
Compound ID: 260

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Structure type: oligomer
Reference(s) to other database(s): GlycomeDB:268

Carbohydrate Research 2006, "Sequence determination of oligosaccharides and regular polysaccharides using NMR spectroscopy and a novel Web-based version of the computer program casper"
CSDB ID 20123 (all data & tools)
Compound ID: 7231

P-6)-D-Fru Show graphically

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Structure type: monomer
Reference(s) to other database(s): GTC:G48268AX, GlycomeDB:27879

Chemistry and Biology 2006, "An In Vitro Screen of Bacterial Lipopolysaccharide Biosynthetic Enzymes Identifies an Inhibitor of ADP-Heptose Biosynthesis"
CSDB ID 20124 (all data & tools)
Compound ID: 7232

P-5)-D-Rib Show graphically

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Structure type: monomer
Reference(s) to other database(s): GTC:G49668AP, GlycomeDB:27976

Chemistry and Biology 2006, "An In Vitro Screen of Bacterial Lipopolysaccharide Biosynthetic Enzymes Identifies an Inhibitor of ADP-Heptose Biosynthesis"
CSDB ID 20418 (all data & tools)
Compound ID: 4319

P-7)-D-gro-D-manHep Show graphically

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Structure type: monomer
Trivial name: D-glycero-D-manno-heptose-7-phosphate
Reference(s) to other database(s): GTC:G37889CH, GlycomeDB:27767

Chemistry and Biology 2006, "An In Vitro Screen of Bacterial Lipopolysaccharide Biosynthetic Enzymes Identifies an Inhibitor of ADP-Heptose Biosynthesis"
CSDB ID 20419 (all data & tools)

Bioorganic and Medicinal Chemistry 2008, "Towards Gram-negative antivirulence drugs: New inhibitors of HldE kinase"
CSDB ID 23425 (all data & tools)
Compound ID: 7233

P-4)-Ery Show graphically

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Structure type: monomer
Reference(s) to other database(s): GTC:G56540ZK

Chemistry and Biology 2006, "An In Vitro Screen of Bacterial Lipopolysaccharide Biosynthetic Enzymes Identifies an Inhibitor of ADP-Heptose Biosynthesis"
CSDB ID 20420 (all data & tools)
Compound ID: 7234

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Structure type: monomer
Reference(s) to other database(s): GlycomeDB:27978

Chemistry and Biology 2006, "An In Vitro Screen of Bacterial Lipopolysaccharide Biosynthetic Enzymes Identifies an Inhibitor of ADP-Heptose Biosynthesis"
CSDB ID 20421 (all data & tools)
Compound ID: 7235

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Structure type: monomer
Reference(s) to other database(s): GlycomeDB:27978

Chemistry and Biology 2006, "An In Vitro Screen of Bacterial Lipopolysaccharide Biosynthetic Enzymes Identifies an Inhibitor of ADP-Heptose Biosynthesis"
CSDB ID 20422 (all data & tools)
Compound ID: 7236

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Structure type: monomer
Reference(s) to other database(s): GlycomeDB:27982

Chemistry and Biology 2006, "An In Vitro Screen of Bacterial Lipopolysaccharide Biosynthetic Enzymes Identifies an Inhibitor of ADP-Heptose Biosynthesis"
CSDB ID 20429 (all data & tools)
Compound ID: 7240

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Structure type: oligomer
Aglycon: (1->3) lipid A
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G68489YV, GlycomeDB:26361

FASEB Journal 1994, "Bacterial endotoxin: Molecular relationships of structure to activity and function"
CSDB ID 22447 (all data & tools)

Compound ID: 7241

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Compound ID: 7242

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Compound ID: 7243

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Structure type: oligomer
Aglycon: (1->3) lipid A
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G14695QL, GlycomeDB:27159

FASEB Journal 1994, "Bacterial endotoxin: Molecular relationships of structure to activity and function"
CSDB ID 22450 (all data & tools)

Compound ID: 7541

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Compound ID: 7576

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Compound ID: 7577

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Compound ID: 7679

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Compound ID: 7512

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Structure type: monomer
Trivial name: ADP-D-glycero-D-manno-heptose (ADP-DDHep), ADP-D-glycero-β-D-manno-heptose
Reference(s) to other database(s): GlycomeDB:25347

Bioorganic and Medicinal Chemistry 2008, "Towards Gram-negative antivirulence drugs: New inhibitors of HldE kinase"
CSDB ID 23512 (all data & tools)
Compound ID: 8480

b-Kdop-(2--P--5)--C Show graphically

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Structure type: monomer
Trivial name: CMP-Kdo

Journal of Biological Chemistry 2009, "Structure-based mechanism of CMP-2-keto-3-deoxy-manno-octulonic acid synthetase: convergent evolution of a sugar-activating enzyme with DNA/RNA polymerases"
CSDB ID 23711 (all data & tools)
Compound ID: 8551

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Structure type: homopolymer
Trivial name: PNAG, polysaccharide intercellular adhesin (PIA)
Compound class: EPS
Reference(s) to other database(s): GTC:G11006VI

Carbohydrate Research 2009, "Efficient synthesis and protein conjugation of β-(1→6)-d-N-acetylglucosamine oligosaccharides from the polysaccharide intercellular adhesin"
CSDB ID 24080 (all data & tools)

Compound ID: 8665

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Compound ID: 7938

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Structure type: monomer
Trivial name: UDP-α-D-galactofuranose, UDP-galactofuranose
Compound class: nucleoside diphosphate sugar

Chembiochem: a European Journal of Chemical Biology 2009, "Chemistry and biology of galactofuranose-containing polysaccharides"
CSDB ID 24199 (all data & tools)
Compound ID: 8721

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Structure type: monomer
Compound class: lipid A

Biochemistry 2009, "Biosynthesis of undecaprenyl phosphate-galactosamine and undecaprenyl phosphate-glucose in Francisella novicida"
CSDB ID 31236 (all data & tools)

Compound ID: 8853

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Compound ID: 8886

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Compound ID: 8934

-6)-b-D-GlcpNAc-(1- Show graphically

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Structure type: homopolymer ; n=5,9
Aglycon: spacer
Trivial name: PNAG
Compound class: EPS
Reference(s) to other database(s): GTC:G11006VI, GlycomeDB:11210

Infection and Immunity 2010, "Synthetic b-(1->6)-linked N-acetylated and non-acetylated oligoglucosamines to produce conjugate vaccines for bacterial pathogens"
CSDB ID 25253 (all data & tools)
Compound ID: 8935

-6)-b-D-GlcpN-(1- Show graphically

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Structure type: homopolymer ; n=5,9
Aglycon: spacer
Trivial name: PNAG
Compound class: EPS
Reference(s) to other database(s): GTC:G30568EB, GlycomeDB:27802

Infection and Immunity 2010, "Synthetic b-(1->6)-linked N-acetylated and non-acetylated oligoglucosamines to produce conjugate vaccines for bacterial pathogens"
CSDB ID 25650 (all data & tools)

Compound ID: 8971

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Compound ID: 9299

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Compound ID: 9429

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Compound ID: 9488

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Compound ID: 9489

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Compound ID: 9544

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Compound ID: 9678

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Structure type: fragment of a bigger structure
Aglycon: lipid A
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G41560CU

Mendeleev Communications 2011, "Higher aldulosonic acids: components of bacterial glycans"
CSDB ID 31089 (all data & tools)
Compound ID: 9713

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Structure type: polymer chemical repeating unit
Trivial name: Enterobacterial common antigen (ECA)
Reference(s) to other database(s): GTC:G90704QO

Analytical Biochemistry 2011, "Development of mass cytometry methods for bacterial discrimination"
CSDB ID 26268 (all data & tools)
Compound ID: 10275

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Structure type: oligomer
Aglycon: trimethylsylilethyl (instead of natural Cer)
Trivial name: GbO4

Cell 2001, "Structural basis of the interaction of the pyelonephritic E. coli adhesin to its human kidney receptor"
CSDB ID 11432 (all data & tools)

Compound ID: 10640

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Compound ID: 11092

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Structure type: oligomer
Aglycon: 5-aminopentyl
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G07682RX

Angewandte Chemie, International Edition 2013, "Plague detection by anti-carbohydrate antibodies"
CSDB ID 29427 (all data & tools)

Compound ID: 11130

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Compound ID: 11138

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Compound ID: 11486

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Compound ID: 11512

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Compound ID: 11800

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Compound ID: 11801

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Structure type: monomer ; 305.0634 [M+H]+
C8H18O10P
Trivial name: Hep4P

Journal of Organic Chemistry 2014, "Convergent synthesis of 4-O-phosphorylated L-glycero-D-manno-heptosyl lipopolysaccharide core oligosaccharides based on regioselective cleavage of a 6,7-O-tetraisopropyldisiloxane-1,3-diyl protecting group"
CSDB ID 30467 (all data & tools)
Compound ID: 11802

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Structure type: oligomer ; 495.1122 [M-H]-
C15H27O16P
Compound class: core oligosaccharide

Journal of Organic Chemistry 2014, "Convergent synthesis of 4-O-phosphorylated L-glycero-D-manno-heptosyl lipopolysaccharide core oligosaccharides based on regioselective cleavage of a 6,7-O-tetraisopropyldisiloxane-1,3-diyl protecting group"
CSDB ID 30468 (all data & tools)
Compound ID: 11803

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Structure type: oligomer ; 465.1013 [M-H]-
C14H26O15P
Compound class: core oligosaccharide

Journal of Organic Chemistry 2014, "Convergent synthesis of 4-O-phosphorylated L-glycero-D-manno-heptosyl lipopolysaccharide core oligosaccharides based on regioselective cleavage of a 6,7-O-tetraisopropyldisiloxane-1,3-diyl protecting group"
CSDB ID 30469 (all data & tools)
Compound ID: 11804

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Structure type: oligomer ; 495.1122 [M-H]-
C15H28O16P
Compound class: core oligosaccharide

Journal of Organic Chemistry 2014, "Convergent synthesis of 4-O-phosphorylated L-glycero-D-manno-heptosyl lipopolysaccharide core oligosaccharides based on regioselective cleavage of a 6,7-O-tetraisopropyldisiloxane-1,3-diyl protecting group"
CSDB ID 30470 (all data & tools)

Compound ID: 11805

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Compound ID: 11887

-2)-b-Glc-(1- Show graphically

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Structure type: homopolymer
Reference(s) to other database(s): GTC:G60508RJ

Trends in Glycoscience and Glycotechnology 2000, "The biosynthesis of β-glycans"
CSDB ID 40833 (all data & tools)
Compound ID: 12079

-6)-b-D-GlcpNAc-(1- Show graphically

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Structure type: homopolymer ; n=9
Aglycon: 3-(4-(acetylthio)butyrylamino)propyl or spacer + carrier protein (Tetanus Toxoid)
Trivial name: PNAG
Reference(s) to other database(s): GTC:G11006VI

Carbohydrate Research 2015, "Surface polysaccharides from Acinetobacter baumannii: Structures and syntheses"
CSDB ID 30956 (all data & tools)

Compound ID: 12432

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Compound ID: 12793

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Compound ID: 13025

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Compound ID: 13297

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Structure type: polymer chemical repeating unit
Compound class: EPS, glucan
Reference(s) to other database(s): GTC:G06401NN

Current Medicinal Chemistry 2013, "An overview on natural polysaccharides with antioxidant properties"
CSDB ID 47195 (all data & tools)
Compound ID: 13663

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Structure type: fragment of a bigger structure
Compound class: CPS
Reference(s) to other database(s): GTC:G02109KF

Journal of the American Chemical Society 2019, "High-Throughput 'FP-Tag' Assay for the Identification of Glycosyltransferase Inhibitors"
CSDB ID 1011 (all data & tools)

Compound ID: 1820

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Compound ID: 14276

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Compound ID: 14540

R-3HOMyr-(1-2)-+ | Lau-(1-3)-R-3HOMyr-(1-2)-+ | | | a-D-Galp-(1-2)-a-D-Galp-(1-2)-+ L-gro-a-D-manHepp-(1-7)-+ EtN-(1---P---P---4)-+ a-Kdop-(2-4)-+ | | | | | | | | {{{-a-D-Fucp4NAc-(1-4)-b-D-ManpNAcA-(1-4)-a-D-GlcpNAc-(1-3)-}}}/n=9/-a-D-Fucp4NAc-(1-4)-b-D-ManpNAcA-(1-4)-b-D-GlcpNAc-(1-3)-b-D-Glcp-(1-3)-a-D-Glcp-(1-3)-a-D-Glcp-(1-3)-L-gro-a-D-manHepp-(1-3)-L-gro-a-D-manHepp-(1-5)-a-Kdop-(2-6)-b-D-GlcpN-(1-6)-a-D-GlcpN-(1-P | | | P-4)-+ Myr-(1-3)-R-3HOMyr-(1-3)-+ | | R-3HOMyr-(1-3)-+

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Compound ID: 15709

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Compound ID: 15757

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Structure type: oligomer
Trivial name: glycosylglycerolipid

Methods in Molecular Biology 2021, "Structural Analysis of Glycosylglycerolipids Using NMR Spectroscopy"
CSDB ID 5880 (all data & tools)
Compound ID: 15758

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Structure type: oligomer
Trivial name: glycosylglycerolipid

Methods in Molecular Biology 2021, "Structural Analysis of Glycosylglycerolipids Using NMR Spectroscopy"
CSDB ID 5881 (all data & tools)

Compound ID: 15883

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Compound ID: 16008

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Structure type: polymer chemical repeating unit
Trivial name: phosphoethanolamine cellulose
Compound class: EPS

Chemical Reviews 2022, "Chemical reporters for bacterial glycans: development and applications"
CSDB ID 20835 (all data & tools)
Compound ID: 16071

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Structure type: polymer chemical repeating unit
Trivial name: ECA
Compound class: enterobacterial common antigen

Chemical Reviews 2022, "Synthetic Glycans to Improve Current Glycoconjugate Vaccines and Fight Antimicrobial Resistance"
CSDB ID 20921 (all data & tools)
Compound ID: 16072

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Structure type: oligomer
Aglycon: spacer-BSA
Trivial name: ECA
Compound class: enterobacterial common antigen

Chemical Reviews 2022, "Synthetic Glycans to Improve Current Glycoconjugate Vaccines and Fight Antimicrobial Resistance"
CSDB ID 20922 (all data & tools)

Compound ID: 16280

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Compound ID: 6326

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Compound ID: 16398

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Compound ID: 9430

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Compound ID: 16629

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Compound ID: 16646

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Compound ID: 16657

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Compound ID: 13550

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Structure type: polymer chemical repeating unit
Trivial name: hyaluronan, hyaluronic acid
Compound class: CPS, EPS, glucan, polysaccharide
Reference(s) to other database(s): GTC:G16235VG

Microbial Cell Factories 2015, "The sweet branch of metabolic engineering: cherry-picking the low-hanging sugary fruits"
CSDB ID 48505 (all data & tools)
Compound ID: 21336

b-D-GlcpN(%)Ac Show graphically

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Structure type: monomer
Reference(s) to other database(s): GTC:G49108TO

Journal of Biological Chemistry 2018, "Synthetic biology strategies for improving microbial synthesis of "green" biopolymers"
CSDB ID 48815 (all data & tools)

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