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1. (Article ID: 4724)
Sigida EN, Fedorova EE, Zdorovenko EL, Burygin GL, Konnova SA, Ignatov VV
Characterization of the lipopolysaccharides of serogroup II Azospirillum strains
Mikrobiologiia = Microbiology [Russian] 83(4) (2014)
326-334
Lipopolysaccharides of six Azospirillum brasilense strains (SR50, SR80, SR88, SR109, SR111, SR115) and A. lipoferum SR 42 isolated from the rhizosphere of cereal plants of Saratov oblast, Russia and referred to serogroup II by serological analysis were studied. In the lipid A fatty acid composition, the lipopolysaccharides under study were similar to those of other Azospirillum strains and were characterized by a predominance of 3-hydroxytetradecanoic, 3-hydroxyhexadecanoic, and octadecenoic acids. Monosaccharide analysis of the O-specific polysaccharides (including determination of the absolute configurations, methylation analysis, and one- and two-dimensional NMR spectroscopy) revealed the presence of two types of repeating units in varying ratios. A high degree of serological similarity between the strains under study was shown to result from the presence of repeating units with identical structure of their O antigens.
lipopolysaccharides, Azospirillum, structure of the Ospecific polysaccharide, serological investigation
Publication DOI: 10.1134/S0026261714040158Journal NLM ID: 0376652Publisher: Moskva: Izdatelstvo Nauka
Correspondence: Sigida EN
ibppm.sgu.ru>
Institutions: Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia, Institute of Biochemistry and Physiology of Plants and Microorganisms, Russian Academy of Sciences, Saratov, Russia, Chernyshevsky Saratov State University, Russia
Methods: 13C NMR, 1H NMR, methylation, GLC-MS, NMR-2D, sugar analysis, ELISA, GLC, mild acid hydrolysis, Western blotting, serological methods, GPC
The publication contains the following compound(s):
- Compound ID: 273
|
-2)-b-D-Rhap-(1-3)-a-D-Rhap-(1-3)-a-D-Rhap-(1-2)-a-D-Rhap-(1-2)-a-D-Rhap-(1- |
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Structure type: polymer chemical repeating unit
Trivial name: D-rhamnan
Compound class: CPS, O-polysaccharide
Reference(s) to other database(s): GTC:G03470SB, GlycomeDB:
27764
- Compound ID: 11797
|
a-L-Fucp-(1-4)-+
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-3)-a-L-Rhap2(%)Me-(1-3)-b-D-Galp-(1-3)-b-D-GlcpNAc-(1- |
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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G92415PZ
- Compound ID: 11798
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G00907KN
- Compound ID: 10320
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G87184OR
- Compound ID: 11440
|
a-L-Fucp-(1-2)-+
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-3)-a-D-Galp-(1-3)-b-D-Galp-(1-3)-b-D-GalpNAc-(1- |
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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G70615CZ
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2. (Article ID: 4844)
Fedonenko YP, Sigida EN, Konnova SA, Ignatov VV
Structure and serology of O-antigens of nitrogen-fixing rhizobacteria of the genus Azospirillum
Russian Chemical Bulletin = Izvestiia Akademii nauk. Seriia khimicheskaia 64(5) (2015)
1024-1031
The review presents a discussion of the published data of 2002 to 2014 dealing with structural studies of O-specific polysaccharides, representatives of the Azospirillum diazotrophic rhizobacteria, summarizing the results of a series of authors? studies. Some general structures incorporated in O-specific polysaccharides responsible for classification of bacterial cultures into serogroups on the basis of immunochemical studies were characterized. The structures of O-specific polysaccharides of seven azospirillum strains identical to those of previously studied strains are presented in this review for the first time.
lipopolysaccharides, O-specific polysaccharides, Structures, Azospirillum, O-antigenic determinants
Publication DOI: 10.1007/s11172-015-0971-xJournal NLM ID: 100912060Publisher: New York: Consultants Bureau
Correspondence: si_elena

mail.ru
Institutions: Institute of Biochemistry and Physiology of Plants and Microorganisms Russian Academy of Sciences, 13 prosp. Entuziastov, 410049 Saratov, Russian Federation
The publication contains the following compound(s):
- Compound ID: 273
|
-2)-b-D-Rhap-(1-3)-a-D-Rhap-(1-3)-a-D-Rhap-(1-2)-a-D-Rhap-(1-2)-a-D-Rhap-(1- |
Show graphically |
Structure type: polymer chemical repeating unit
Trivial name: D-rhamnan
Compound class: CPS, O-polysaccharide
Reference(s) to other database(s): GTC:G03470SB, GlycomeDB:
27764
- Compound ID: 1767
|
a-D-Galf-(1-2)-a-L-Rhap-(1-3)-b-D-Manp-(1-3)-a-L-Rhap-(1-3)-+
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-4)-a-L-Rhap-(1-3)-b-D-Galp-(1- |
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Structure type: polymer chemical repeating unit
Compound class: CPS, EPS, O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G84099GD, GlycomeDB:
27459
- Compound ID: 4074
|
a-L-Rhap-(1-3)-a-L-Rhap-(1-2)-a-L-Rhap-(1-3)-b-D-Manp-(1-4)-+
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-3)-b-D-Galp-(1-3)-a-D-Galp-(1- |
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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G55556CH, GlycomeDB:
27611
- Compound ID: 9268
|
b-D-Glcp-(1-3)-+
|
-2)-a-L-Rhap-(1-3)-a-L-Rhap-(1-3)-a-L-Rhap2(63%)Ac-(1- |
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Structure type: polymer chemical repeating unit
Compound class: CPS, O-polysaccharide
Reference(s) to other database(s): GTC:G74445JW
- Compound ID: 7782
|
b-D-Glcp-(1-3)-+
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-2)-a-L-Rhap-(1-3)-a-L-Rhap-(1-3)-a-L-Rhap-(1- |
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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G42224IR, GlycomeDB:
37390
- Compound ID: 7783
|
b-D-Glcp-(1-2)-+
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-3)-a-L-Rhap-(1-3)-a-L-Rhap-(1-2)-a-L-Rhap-(1- |
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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G24525LQ, GlycomeDB:
36942
- Compound ID: 12196
|
b-D-GlcpNAc-(1-4)-+
|
-3)-a-D-Manp-(1-4)-a-L-Rhap2Me-(1-
|
S-3HOBut-(1-2)-+ |
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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide
- Compound ID: 9373
|
a-D-GlcpA-(1-2)-+
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-3)-b-L-Rhap-(1-4)-a-L-Rhap-(1-3)-a-D-Galp-(1-3)-b-L-Rhap-(1-4)-b-L-Rhap3Me-(1-4)-a-L-Rhap-(1-3)-a-D-Galp-(1- |
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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G86843KR
- Compound ID: 10320
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G87184OR
- Compound ID: 12195
|
a-L-Fucp-(1-4)-+
|
-3)-a-L-Rhap2(65%)Me-(1-3)-b-D-Galp-(1-3)-b-D-GlcpNAc-(1- |
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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G92415PZ
- Compound ID: 10321
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G00907KN
- Compound ID: 12194
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G30707GK
- Compound ID: 11440
|
a-L-Fucp-(1-2)-+
|
-3)-a-D-Galp-(1-3)-b-D-Galp-(1-3)-b-D-GalpNAc-(1- |
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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G70615CZ
- Compound ID: 9457
|
b-D-Glcp-(1-4)-+
|
-2)-a-L-Rhap-(1-3)-a-L-Rhap-(1-3)-a-L-Rhap-(1- |
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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G45617UU
- Compound ID: 11796
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G20286RP
- Compound ID: 12197
|
b-D-GalpNAc4Me-(1-4)-+
|
-4)-a-L-Rhap-(1-3)-a-L-Rhap-(1-3)-b-D-ManpNAc-(1- |
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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G26770LK
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