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Wold CW, Kjeldsen C, Corthay A, Rise F, Christensen BE, Duus JO, Inngjerdingen KT
Structural characterization of bioactive heteropolysaccharides from the medicinal fungus Inonotus obliquus (Chaga)
Carbohydrate Polymers 185 (2018)
27-40
|
-3)-b-D-Glcp-(1-3)-b-D-Glcp-(1-3)-b-D-Glcp-(1-3)-b-D-Glcp-(1-6)-b-D-Glcp-(1- |
Show graphically |
Inonotus obliquus
(NCBI TaxID 167356,
species name lookup)
Taxonomic group: fungi / Basidiomycota
(Phylum: Basidiomycota)
The structure was elucidated in this paperNCBI PubMed ID: 29421057Publication DOI: 10.1016/j.carbpol.2017.12.041Journal NLM ID: 8307156Publisher: Elsevier
Correspondence: Wold CW <c.w.wold

farmasi.uio.no>
Institutions: Department of Chemistry, University of Oslo, Oslo, Norway, School of Pharmacy, University of Oslo, Oslo, Norway, Department of Chemistry, Technical University of Denmark, Lyngby, Denmark, Tumor Immunology Lab, Department of Pathology, Rikshospitalet, Oslo University Hospital, Oslo, Norway, NOBIPOL, Department of Biotechnology and Food Science, Norwegian University of Science and Technology, Trondheim, Norway
The aim of this paper was to perform a comprehensive characterization of polysaccharides isolated from the interior (IOI) and exterior (IOE) parts of the fungus Inonotus obliquus. Pre-extraction with DCM and MeOH, followed by water and alkali extraction and ethanol precipitation gave two water extracts and two alkali extracts. Neutral and acidic polysaccharide fractions were obtained after anion-exchange chromatography of the water extracts. The neutral polysaccharides (60-73 kDa) were heterogeneous and branched and consisted of a (1→3)-linked β-Glc backbone with (1→6)-linked kinks in the chain at approximately every fifth residue, with branches of (1→6)-linked β-Glc in addition to substantial amounts of (1→6)-linked α-Gal with 3-O-methylation at about every third Gal residue. The acidic polysaccharide fractions (10-31 kDa) showed similar structural motifs as the neutral fractions differing mainly by the presence of (1→4)-linked α-GalA and α-GlcA. β-Xyl, α-Man and α-Rha were also present in varying amounts in all fractions. No major structural differences between the IOI and IOE fractions were observed. An alkaline polysaccharide fraction (>450 kDa) was obtained from the IOI alkali extract, and consisted mainly of (1→3)- and (1→6)-linked β-Glc and (1→4)-linked β-Xyl. Several of the fractions showed in vitro immunomodulatory effect by increasing NO production in the murine macrophage and dendritic cell lines J774.A1 and D2SC/1. Most fractions managed to increase NO production only at the highest concentration tested (100 μg/ml), while the neutral fraction IOE-WN activated potent NO production at 10 μg/ml and was considered the most promising immunomodulating fraction in this study.
NMR, polysaccharides, galactoglucan, Structural characterization, fungi, chaga
Structure type: fragment of a bigger structure
Location inside paper: Abstract, IOI-WN, IOE-WN, table 4
Contained glycoepitopes: IEDB_1397514,IEDB_141806,IEDB_142488,IEDB_146664,IEDB_153543,IEDB_158555,IEDB_2278476,IEDB_241101,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, methylation, periodate oxidation, GC, Smith degradation, FTIR, methanolysis, extraction, TOCSY, SEC, ethylation, dialysis, SEC-MALLS, determination of NO production, precipitation, phenol-sulfuric acid assay, HMBC, centrifugation, COSY, HSQC, filtration, anion exchange column, Gc-MS, demethylation, NESY
Comments, role: main chain; total molecular mass of polysaccharide with ID 49038 is 60000-73000
Related record ID(s): 49038
NCBI Taxonomy refs (TaxIDs): 167356Reference(s) to other database(s): GTC:G41544AX
Show glycosyltransferases
NMR conditions: in D2O
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
6,3,3,3 bDGlcp 102.48 73.17 84.59 68.17 75.44 60.80
6,3,3 bDGlcp 102.48 73.17 84.59 68.17 75.44 60.80
6,3 bDGlcp 102.48 73.17 84.59 68.17 75.44 60.80
6 bDGlcp 102.40 72.58 84.79 68.11 75.44 60.80
bDGlcp 102.92 73.35 75.42 69.62 74.59 68.85
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
6,3,3,3 bDGlcp 4.87 3.65 3.85 3.61 3.60 3.83-4.03
6,3,3 bDGlcp 4.87 3.65 3.85 3.61 3.60 3.83-4.03
6,3 bDGlcp 4.87 3.65 3.85 3.61 3.60 3.83-4.03
6 bDGlcp 4.63 3.61 3.84 3.60 3.58 3.83-4.03
bDGlcp 4.80 3.47 3.62 3.51 3.80 3.96-4.31
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
6,3,3,3 bDGlcp 102.48/4.87 73.17/3.65 84.59/3.85 68.17/3.61 75.44/3.60 60.80/3.83-4.03
6,3,3 bDGlcp 102.48/4.87 73.17/3.65 84.59/3.85 68.17/3.61 75.44/3.60 60.80/3.83-4.03
6,3 bDGlcp 102.48/4.87 73.17/3.65 84.59/3.85 68.17/3.61 75.44/3.60 60.80/3.83-4.03
6 bDGlcp 102.40/4.63 72.58/3.61 84.79/3.84 68.11/3.60 75.44/3.58 60.80/3.83-4.03
bDGlcp 102.92/4.80 73.35/3.47 75.42/3.62 69.62/3.51 74.59/3.80 68.85/3.96-4.31
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| 6,3,3,3 | bDGlcp | 4.87 | 3.65 | 3.85 | 3.61 | 3.60 | 3.83 4.03 |
| 6,3,3 | bDGlcp | 4.87 | 3.65 | 3.85 | 3.61 | 3.60 | 3.83 4.03 |
| 6,3 | bDGlcp | 4.87 | 3.65 | 3.85 | 3.61 | 3.60 | 3.83 4.03 |
| 6 | bDGlcp | 4.63 | 3.61 | 3.84 | 3.60 | 3.58 | 3.83 4.03 |
| | bDGlcp | 4.80 | 3.47 | 3.62 | 3.51 | 3.80 | 3.96 4.31 |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 6,3,3,3 | bDGlcp | 102.48 | 73.17 | 84.59 | 68.17 | 75.44 | 60.80 |
| 6,3,3 | bDGlcp | 102.48 | 73.17 | 84.59 | 68.17 | 75.44 | 60.80 |
| 6,3 | bDGlcp | 102.48 | 73.17 | 84.59 | 68.17 | 75.44 | 60.80 |
| 6 | bDGlcp | 102.40 | 72.58 | 84.79 | 68.11 | 75.44 | 60.80 |
| | bDGlcp | 102.92 | 73.35 | 75.42 | 69.62 | 74.59 | 68.85 |
|
There is only one chemically distinct structure:
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Wold CW, Kjeldsen C, Corthay A, Rise F, Christensen BE, Duus JO, Inngjerdingen KT
Structural characterization of bioactive heteropolysaccharides from the medicinal fungus Inonotus obliquus (Chaga)
Carbohydrate Polymers 185 (2018)
27-40
Inonotus obliquus
(NCBI TaxID 167356,
species name lookup)
Taxonomic group: fungi / Basidiomycota
(Phylum: Basidiomycota)
The structure was elucidated in this paperNCBI PubMed ID: 29421057Publication DOI: 10.1016/j.carbpol.2017.12.041Journal NLM ID: 8307156Publisher: Elsevier
Correspondence: Wold CW <c.w.wold

farmasi.uio.no>
Institutions: Department of Chemistry, University of Oslo, Oslo, Norway, School of Pharmacy, University of Oslo, Oslo, Norway, Department of Chemistry, Technical University of Denmark, Lyngby, Denmark, Tumor Immunology Lab, Department of Pathology, Rikshospitalet, Oslo University Hospital, Oslo, Norway, NOBIPOL, Department of Biotechnology and Food Science, Norwegian University of Science and Technology, Trondheim, Norway
The aim of this paper was to perform a comprehensive characterization of polysaccharides isolated from the interior (IOI) and exterior (IOE) parts of the fungus Inonotus obliquus. Pre-extraction with DCM and MeOH, followed by water and alkali extraction and ethanol precipitation gave two water extracts and two alkali extracts. Neutral and acidic polysaccharide fractions were obtained after anion-exchange chromatography of the water extracts. The neutral polysaccharides (60-73 kDa) were heterogeneous and branched and consisted of a (1→3)-linked β-Glc backbone with (1→6)-linked kinks in the chain at approximately every fifth residue, with branches of (1→6)-linked β-Glc in addition to substantial amounts of (1→6)-linked α-Gal with 3-O-methylation at about every third Gal residue. The acidic polysaccharide fractions (10-31 kDa) showed similar structural motifs as the neutral fractions differing mainly by the presence of (1→4)-linked α-GalA and α-GlcA. β-Xyl, α-Man and α-Rha were also present in varying amounts in all fractions. No major structural differences between the IOI and IOE fractions were observed. An alkaline polysaccharide fraction (>450 kDa) was obtained from the IOI alkali extract, and consisted mainly of (1→3)- and (1→6)-linked β-Glc and (1→4)-linked β-Xyl. Several of the fractions showed in vitro immunomodulatory effect by increasing NO production in the murine macrophage and dendritic cell lines J774.A1 and D2SC/1. Most fractions managed to increase NO production only at the highest concentration tested (100 μg/ml), while the neutral fraction IOE-WN activated potent NO production at 10 μg/ml and was considered the most promising immunomodulating fraction in this study.
NMR, polysaccharides, galactoglucan, Structural characterization, fungi, chaga
Structure type: fragment of a bigger structure
Location inside paper: Abstract, IOI-WN, IOE-WN, table 4
Contained glycoepitopes: IEDB_134624,IEDB_135614,IEDB_136906,IEDB_137472,IEDB_140529,IEDB_141794,IEDB_141806,IEDB_142488,IEDB_146664,IEDB_151528,IEDB_167069,IEDB_190606,IEDB_241101,IEDB_983931,SB_163,SB_192,SB_7
Methods: 13C NMR, 1H NMR, methylation, periodate oxidation, GC, Smith degradation, FTIR, methanolysis, extraction, TOCSY, SEC, ethylation, dialysis, SEC-MALLS, determination of NO production, precipitation, phenol-sulfuric acid assay, HMBC, centrifugation, COSY, HSQC, filtration, anion exchange column, Gc-MS, demethylation, NESY
Comments, role: side chain, connected to main chain at C6; total molecular mass of polysaccharide with ID 49037 is 60000-73000
Related record ID(s): 49037
NCBI Taxonomy refs (TaxIDs): 167356Reference(s) to other database(s): GTC:G99049KK
Show glycosyltransferases
NMR conditions: in D2O
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
6,6,3 33%Me 56.02
6,6 aDGalp 97.72 67.42 78.77 65.10 68.77 66.76
6 bDGlcp 102.72 73.05 75.62 69.52 74.82 68.85
bDGlcp 102.72 73.05 75.62 69.52 74.82 68.85
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
6,6,3 33%Me 3.53
6,6 aDGalp 5.07 3.97 3.63 4.38 4.27 3.78-4.01
6 bDGlcp 4.61 3.42 3.59 3.55 3.72 3.96-4.31
bDGlcp 4.61 3.42 3.59 3.55 3.72 3.96-4.31
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
6,6,3 33%Me 56.02/3.53
6,6 aDGalp 97.72/5.07 67.42/3.97 78.77/3.63 65.10/4.38 68.77/4.27 66.76/3.78-4.01
6 bDGlcp 102.72/4.61 73.05/3.42 75.62/3.59 69.52/3.55 74.82/3.72 68.85/3.96-4.31
bDGlcp 102.72/4.61 73.05/3.42 75.62/3.59 69.52/3.55 74.82/3.72 68.85/3.96-4.31
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| 6,6,3 | 33%Me | 3.53 | |
| 6,6 | aDGalp | 5.07 | 3.97 | 3.63 | 4.38 | 4.27 | 3.78 4.01 |
| 6 | bDGlcp | 4.61 | 3.42 | 3.59 | 3.55 | 3.72 | 3.96 4.31 |
| | bDGlcp | 4.61 | 3.42 | 3.59 | 3.55 | 3.72 | 3.96 4.31 |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 6,6,3 | 33%Me | 56.02 | |
| 6,6 | aDGalp | 97.72 | 67.42 | 78.77 | 65.10 | 68.77 | 66.76 |
| 6 | bDGlcp | 102.72 | 73.05 | 75.62 | 69.52 | 74.82 | 68.85 |
| | bDGlcp | 102.72 | 73.05 | 75.62 | 69.52 | 74.82 | 68.85 |
|
There is only one chemically distinct structure:
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Zhang AQ, Deng JY, Liu XQ, He PF, He L, Zhang FM, Linhardt RJ, Sun PL
Structure and conformation of α-glucan extracted from Agaricus blazei Murill by high-speed shearing homogenization
International Journal of Biological Macromolecules 113 (2018)
558-564
|
/Variants 0/-+
|
-4)-a-D-Glcp-(1-
/Variants 0/ is:
7%a-D-Glcp-(1-6)-
OR (exclusively)
a-D-Glcp-(1-6)-3%b-D-Glcp-(1-6)- |
Show graphically |
Agaricus blazei
(NCBI TaxID 79798,
species name lookup)
Taxonomic group: fungi / Basidiomycota
(Phylum: Basidiomycota)
Organ / tissue: fruiting bodies
The structure was elucidated in this paperNCBI PubMed ID: 29501839Publication DOI: 10.1016/j.ijbiomac.2018.02.151Journal NLM ID: 7909578Publisher: Butterworth-Heinemann
Correspondence: Zhang AQ <zhanganqiang

zjut.edu.cn>
Institutions: The Key Laboratory of Biological and Chemical Utilization of Zhejiang Province, Zhejiang Forestry Academy, Hangzhou, China, Department of Chemical and Biological Engineering, Center for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute, Troy, USA, Department of Food and Technology, Zhejiang University of Technology, Hangzhou, China, Departments of Chemistry and Chemical Biology and Biomedical Engineering, Department of Biological Science, Center for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute, Troy, USA
Agaricus blazei Murill is an edible and medicinal mushroom favored in many countries, by virtue of both its delicious taste and its potential health benefits such as its purported anticancer activity. A neutral α-glucan (ABM401) with a carbohydrate content of 96% was purified from the high-speed shearing homogenization extracts of A. Blazei Murill by ethanol precipitation and column chromatography. Methylation analysis along with nuclear magnetic resonance spectroscopy revealed that ABM40-1 was an α-(1→4)-D-glucopyranan with O-6 position occasionally occupied with α-Glcp-(1→ or α-Glcp-(1→6)-β-Glcp-(1→ side chains. A weight-average molecular weight of 7.34 x 10(6) Da was determined for ABM40-1 and its chain in solution was revealed as a compact sphere by size exclusion chromatography (SEC) coupled with a laser light scattering. This spherical conformation was also further confirmed by Congo red test and using atom force microscopy. These results suggest it would be worthwhile to further study the potential bioactivities of ABM40-1.
structure, polysaccharide, Chain conformation, Agaricus blazei Murill, high-speed shearing homogenization
Structure type: structural motif or average structure ; 7340000
Location inside paper: fig. 3, ABM40-1, table 2
Compound class: glucan
Contained glycoepitopes: IEDB_140629,IEDB_141806,IEDB_142488,IEDB_144998,IEDB_146664,IEDB_420417,IEDB_420418,IEDB_420419,IEDB_420421,IEDB_857742,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, GC-MS, extraction, acetylation, TOCSY, DEAE, methylation analysis, CC, precipitation, phenol-sulfuric acid assay, HMBC, Congo Red assay, COSY, HSQC, AFM, FT-IR, UV-vis, TFA hydrolysis, SEC-MALLS-RI, NESY
3D data: spherical chain conformation
NCBI Taxonomy refs (TaxIDs): 79798
Show glycosyltransferases
NMR conditions: in D2O at 298 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
aDGlcp 99.73 71.85 73.41 77.09 70.21 68.97
6,6 aDGlcp 100.05 71.76 73.06 69.65 72.19 60.43
6 3%bDGlcp 102.98 73.13 75.70 69.75 74.87 68.97
6 7%aDGlcp 100.05 71.76 73.06 69.65 72.19 60.43
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
aDGlcp 5.41 3.65 3.97 3.68 3.94 3.87-4.24
6,6 aDGlcp 5.41 3.59 3.73 3.43 3.68 3.78-3.86
6 3%bDGlcp 4.54 3.34 3.50 3.47 3.64 3.85-4.24
6 7%aDGlcp 5.41 3.59 3.73 3.43 3.68 3.78-3.86
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
aDGlcp 99.73/5.41 71.85/3.65 73.41/3.97 77.09/3.68 70.21/3.94 68.97/3.87-4.24
6,6 aDGlcp 100.05/5.41 71.76/3.59 73.06/3.73 69.65/3.43 72.19/3.68 60.43/3.78-3.86
6 3%bDGlcp 102.98/4.54 73.13/3.34 75.70/3.50 69.75/3.47 74.87/3.64 68.97/3.85-4.24
6 7%aDGlcp 100.05/5.41 71.76/3.59 73.06/3.73 69.65/3.43 72.19/3.68 60.43/3.78-3.86
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| | aDGlcp | 5.41 | 3.65 | 3.97 | 3.68 | 3.94 | 3.87 4.24 |
| 6,6 | aDGlcp | 5.41 | 3.59 | 3.73 | 3.43 | 3.68 | 3.78 3.86 |
| 6 | 3%bDGlcp | 4.54 | 3.34 | 3.50 | 3.47 | 3.64 | 3.85 4.24 |
| 6 | 7%aDGlcp | 5.41 | 3.59 | 3.73 | 3.43 | 3.68 | 3.78 3.86 |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| | aDGlcp | 99.73 | 71.85 | 73.41 | 77.09 | 70.21 | 68.97 |
| 6,6 | aDGlcp | 100.05 | 71.76 | 73.06 | 69.65 | 72.19 | 60.43 |
| 6 | 3%bDGlcp | 102.98 | 73.13 | 75.70 | 69.75 | 74.87 | 68.97 |
| 6 | 7%aDGlcp | 100.05 | 71.76 | 73.06 | 69.65 | 72.19 | 60.43 |
|
There is only one chemically distinct structure:
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