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1. (Article ID: 4907)
Sigida EN, Fedonenko YP, Shashkov AS, Arbatsky NP, Zdorovenko EL, Konnova SA, Ignatov VV, Knirel YA
Elucidation of a masked repeating structure of the O-specific polysaccharide of the halotolerant soil bacteria Azospirillum halopraeferens Au4
Beilstein Journal of Organic Chemistry 12 (2016)
636-642
An O-specific polysaccharide was obtained by mild acid hydrolysis of the lipopolysaccharide isolated by the phenol-water extraction from the halotolerant soil bacteria Azospirillum halopraeferens type strain Au4. The polysaccharide was studied by sugar and methylation analyses, selective cleavages by Smith degradation and solvolysis with trifluoroacetic acid, one- and two-dimensional (1)H and (13)C NMR spectroscopy. The following masked repeating structure of the O-specific polysaccharide was established: →3)-a-L-Rhap2Me-(1→3)-[b-D-Glcp-(1→4)]-a-D-Fucp-(1→2)-b-D-Xylp-(1→, where non-stoichiometric substituents, an O-methyl group (~45%) and a side-chain glucose residue (~65%), are shown in italics.
Lipopolysaccharide, O-specific polysaccharide, bacterial polysaccharide structure, Smith degradation, triflic acid solvolysis, Azospirillum halopraeferens
NCBI PubMed ID: 27340454Publication DOI: 10.3762/bjoc.12.62Journal NLM ID: 101250746Publisher: Beilstein-Institut
Correspondence: Elena N. Sigida
mail.ru>
Institutions: N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia, Institute of Biochemistry and Physiology of Plants and Microorganisms, Russian Academy of Sciences, Prospekt Entuziastov 13, Saratov 410049, Russia, Chernyshevsky Saratov State University, Ulitsa Astrakhanskaya 83, Saratov 410012, Russia
Methods: 13C NMR, 1H NMR, GLC-MS, NMR-2D, HF solvolysis, sugar analysis, GLC, Smith degradation, HPLC, GPC
The publication contains the following compound(s):
- Compound ID: 12347
|
65%b-D-Glcp-(1-4)-+
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-3)-a-L-Rhap2(45%)Me-(1-3)-a-D-Fucp-(1-2)-b-D-Xylp-(1- |
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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G79807RR
- Compound ID: 12348
|
b-D-Glcp-(1-4)-+
|
-3)-a-L-Rhap-(1-3)-a-D-Fucp-(1-2)-b-D-Xylp-(1- |
Show graphically |
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G98148NY
- Compound ID: 12349
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G51530CN
- Compound ID: 12350
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G75691EM
- Compound ID: 12351
Structure type: oligomer
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G19081SZ
- Compound ID: 12352
Structure type: oligomer
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G35669WX
- Compound ID: 12353
Structure type: oligomer
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G67266PF
- Compound ID: 12354
Structure type: oligomer
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G06601IJ
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