Taxonomic group: bacteria / Cyanobacteria
(Phylum: Cyanobacteria)
NCBI PubMed ID: 16199557Publication DOI: 10.1128/JB.187.20.6883-6892.2005Journal NLM ID: 2985120RPublisher: American Society for Microbiology
Correspondence: Vermaas WFJ <wim

asu.edu>
Institutions: School of Life Sciences, Arizona State University, Tempe, USA
Myxoxanthophyll is a carotenoid glycoside in cyanobacteria that is of unknown biological significance. The sugar moiety of myxoxanthophyll in Synechocystis sp. strain PCC 6803 was identified as dimethyl fucose. The open reading frame sll1213 encoding a fucose synthetase orthologue was deleted to probe the role of fucose and to determine the biological significance of myxoxanthophyll in Synechocystis sp. strain PCC 6803. Upon deletion of sll1213, a pleiotropic phenotype was obtained: when propagated at 0.5 μmol photons/m2/s, photomixotrophic growth of cells lacking sll1213 was poor. When grown at 40 μmol photons/m2/s, growth was comparable to that of the wild type, but cells showed a severe reduction in or loss of the glycocalyx (S-layer). As a consequence, cells aggregated in liquid as well as on plates. At both light intensities, new carotenoid glycosides accumulated, but myxoxanthophyll was absent. New carotenoid glycosides may be a consequence of less-specific glycosylation reactions that gained prominence upon the disappearance of the native sugar moiety (fucose) of myxoxanthophy11. In the mutant, the N-storage compound cyanophycin accumulated, and the organization of thylakoid membranes was altered. Altered cell wall structure and thylakoid membrane organization and increased cyanophycin accumulation were also observed for ∆slr0940K, a strain lacking zeta-carotene desaturase and thereby all carotenoids but retaining fucose. Therefore, lack of myxoxanthophyll and not simply of fucose results in most of the phenotypic effects described here. It is concluded that myxoxanthophyll contributes significantly to the vigor of cyanobacteria, as it stabilizes thylakoid membranes and is critical for S-layer formation
cyanobacteria, myxoxanthophyll, Synechocystis, thylakoid membrane
Structure type: monomer
Location inside paper: Fig. 5, A
Trivial name: myxoxanthophyll
Compound class: glycoside
Contained glycoepitopes: IEDB_130699,IEDB_136045,IEDB_142489,IEDB_144562,IEDB_152214,IEDB_174333,SB_86
Methods: PCR, DNA techniques, TLC, MALDI-TOF MS, HPLC, UV, extraction, affinity chromatography, cell growth, precipitation, TEM, centrifugation, optical density measurement, gene cloning, light microscopy
NCBI Taxonomy refs (TaxIDs): 1148
Show glycosyltransferases
There is only one chemically distinct structure:
Taxonomic group: fungi / Ascomycota
(Phylum: Ascomycota)
NCBI PubMed ID: 31792892Publication DOI: 10.1007/s10719-019-09896-wJournal NLM ID: 8603310Publisher: Kluwer Academic Publishers
Correspondence: anne.usvalampi

aalto.fi
Institutions: Department of Bioproducts and Biosystems, Aalto University School of Chemical Engineering, Espoo, Finland, VTT Technical Research Centre of Finland Ltd., Espoo, Finland, Valio Ltd., Helsinki, Finland
Fucosylated oligosaccharides are interesting molecules due to their bioactive properties. In particular, their application as active ingredient in milk powders is attractive for dairy industries. The objective of this study was to characterize the glycosyl hydrolase family 29 α-fucosidase produced by Aspergillus niger and test its ability to transfucosylate lactose with a view towards potential industrial applications such as the valorization of the lactose side stream produced by dairy industry. In order to reduce costs and toxicity the use of free fucose instead of environmentally questionable fucose derivatives was studied. In contrast to earlier studies, a recombinantly produced A. niger α-fucosidase was utilized. Using pNP-fucose as substrate, the optimal pH for hydrolytic activity was determined to be 3.8. The optimal temperature for a 30-min reaction was 60 °C, and considering temperature stability, the optimal temperature for a 24-h reaction was defined as 45 °C For the same hydrolysis reaction, the kinetic values were calculated to be 0.385 mM for the KM and 2.8 mmol/mg/h for the Vmax. Transfucosylation of lactose occurred at high substrate concentrations when reaction time was elongated to several days. The structure of the product trisaccharide was defined as 1-fucosyllactose, where fucose is α-linked to the anomeric carbon of the β-glucose moiety of lactose. Furthermore, the enzyme was able to hydrolyze its own transfucosylation product and 2'-fucosyllactose but only poorly 3-fucosyllactose. As a conclusion, α-fucosidase from A. niger can transfucosylate lactose using free fucose as substrate producing a novel non-reducing 1-fucosyllactose.
Aspergillus niger, 1-fucosyllactose, fucosyllactose, non-reducing sugar, transfucosylation, α-fucosidase
Structure type: oligomer
Location inside paper: Fig. 3, supplementary materials, Table S2
Trivial name: 1-fucosyllactose
Compound class: trisaccharide
Contained glycoepitopes: IEDB_136044,IEDB_136045,IEDB_137472,IEDB_141794,IEDB_142487,IEDB_142488,IEDB_142489,IEDB_144562,IEDB_146664,IEDB_152214,IEDB_174333,IEDB_190606,IEDB_983931,SB_165,SB_166,SB_187,SB_192,SB_195,SB_6,SB_7,SB_86,SB_88
Methods: 13C NMR, 1H NMR, NMR-2D, PCR, SDS-PAGE, Western blotting, enzymatic digestion, HPAEC-PAD, column chromatography, cell growth, MALDI-TOF/TOF MS, enzymatic assay, centrifugation, ultrafiltration, gene cloning, HPLC-QTOF-MS
Enzymes that release or process the structure: α-L-fucosidase
Synthetic data: enzymatic
Comments, role: DSS-referenced 13C NMR chemical shifts look like shifted (-1.6) by authors to accord to TMS reference
NCBI Taxonomy refs (TaxIDs): 425011Reference(s) to other database(s): GTC:G57530IM, GenDB:XP_001396349.2
Show glycosyltransferases
NMR conditions: in D2O / 0.05%TSP at 295 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
1,4 bDGalp 104.2 72.3 73.8 69.8 76.7 62.3
1 bDGlcp 98.5 73.7 75.5 79.5 76.2 61.2
aLFucp 96.5 68.6 70.7 73.0 68.5 16.6
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
1,4 bDGalp 4.456 3.545 3.666 3.926 3.727 3.773
1 bDGlcp 4.658 3.423 3.674 3.701 3.598 3.826-3.971
aLFucp 5.283 3.838 3.913 3.833 4.220 1.216
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
1,4 bDGalp 104.2/4.456 72.3/3.545 73.8/3.666 69.8/3.926 76.7/3.727 62.3/3.773
1 bDGlcp 98.5/4.658 73.7/3.423 75.5/3.674 79.5/3.701 76.2/3.598 61.2/3.826-3.971
aLFucp 96.5/5.283 68.6/3.838 70.7/3.913 73.0/3.833 68.5/4.220 16.6/1.216
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
1,4 | bDGalp | 4.456 | 3.545 | 3.666 | 3.926 | 3.727 | 3.773 |
1 | bDGlcp | 4.658 | 3.423 | 3.674 | 3.701 | 3.598 | 3.826 3.971 |
| aLFucp | 5.283 | 3.838 | 3.913 | 3.833 | 4.220 | 1.216 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
1,4 | bDGalp | 104.2 | 72.3 | 73.8 | 69.8 | 76.7 | 62.3 |
1 | bDGlcp | 98.5 | 73.7 | 75.5 | 79.5 | 76.2 | 61.2 |
| aLFucp | 96.5 | 68.6 | 70.7 | 73.0 | 68.5 | 16.6 |
|
There is only one chemically distinct structure: