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Fu Y, Shi L, Ding K
Structure elucidation and anti-tumor activity in vivo of a polysaccharide from spores of Ganoderma lucidum (Fr.) Karst
International Journal of Biological Macromolecules 141 (2019)
693-699
|
b-D-Glcp-(1-6)-b-D-Glcp-(1-6)-+
|
-3)-b-D-Glcp-(1-3)-b-D-Glcp-(1-3)-b-D-Glcp-(1-3)-b-D-Glcp-(1- |
Show graphically |
Ganoderma lucidum
(NCBI TaxID 5315,
species name lookup)
Taxonomic group: fungi / Basidiomycota
(Phylum: Basidiomycota)
Organ / tissue: spore
The structure was elucidated in this paperNCBI PubMed ID: 31499104Publication DOI: 10.1016/j.ijbiomac.2019.09.046Journal NLM ID: 7909578Publisher: Butterworth-Heinemann
Correspondence: Shi L <shilei

tp.edu.sg>
Institutions: Qufu Normal University, Qufu, China, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, China, School of Applied Science, Temasek Polytechnic, Singapore
To explore new anti-tumor constituents in the fungi, a water-soluble polysaccharide, WGLP was obtained from spores of Ganoderma lucidum (Fr.) Karst. The average molecular weight of this polysaccharide was estimated to be 15000 Da. Monosaccharide composition analysis indicated that it was composed solely of glucose. From methylation analysis, 1H and 13C NMR spectroscopy, and periodate oxidation and Smith degradation, it could be concluded that WGLP contained β-D-glucose residue exclusively, with an average repeating unit of hexasaccharide, having a backbone consisting of (1→3)-β-D-glucopyranosyl residues, to which the side chain consisting of terminal and (1→6)-β-D-glucopyranosyl residue is attached at position O-6 of the branching residues. Anti-tumor activity assays in vivo showed that WGLP could significantly inhibit the S180 tumor growth in the mice. Furthermore, no drug-related toxic reactions were observed. It was suggested that WGLP might be a potential anti-tumor agent used in the clinic.
structure, polysaccharide, β-glucan, Ganoderma lucidum, anti-tumor activity
Structure type: structural motif or average structure ; 15000
Location inside paper: Table 3
Compound class: glucan, polysaccharide
Contained glycoepitopes: IEDB_135614,IEDB_1397514,IEDB_141806,IEDB_142488,IEDB_146664,IEDB_153543,IEDB_158555,IEDB_161166,IEDB_2278476,IEDB_2278477,IEDB_241101,IEDB_558869,IEDB_857743,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, methylation, periodate oxidation, NMR-2D, IR, TLC, acid hydrolysis, GLC, Smith degradation, extraction, optical rotation measurement, acetylation, methylation analysis, reduction, CC, dialysis, HPGPC, phenol-sulfuric acid assay, SEM, centrifugation, deproteination
Biological activity: polysaccharide could significantly inhibit the S180 tumor growth in the mice
Comments, role: the published polymerization frame was shifted for compatibility with other records
Related record ID(s): 41571, 46639
NCBI Taxonomy refs (TaxIDs): 5315Reference(s) to other database(s): GTC:G30582ZE
Show glycosyltransferases
NMR conditions: in D2O at 298 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
3,3,3 bDGlcp 102.75 73.53 84.38 68.34 76.23 60.93
3,3 bDGlcp 102.75 73.53 84.38 68.34 76.23 60.93
3,6,6 bDGlcp 102.98 73.68 75.80 69.04 76.23 60.93
3,6 bDGlcp 102.75 73.53 75.13 68.34 76.08 69.80
3 bDGlcp 102.75 73.53 84.38 68.34 76.08 69.80
bDGlcp 102.75 73.53 84.38 68.34 76.23 60.93
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
3,3,3 bDGlcp 4.78 3.56 3.77 3.52 3.50 3.68-3.90
3,3 bDGlcp 4.78 3.56 3.77 3.52 3.50 3.68-3.90
3,6,6 bDGlcp 4.57 3.28 3.38 3.36 3.50 3.68-3.90
3,6 bDGlcp 4.78 3.56 3.65 3.52 3.65 3.88-4.18
3 bDGlcp 4.78 3.56 3.77 3.52 3.65 3.88-4.18
bDGlcp 4.78 3.56 3.77 3.52 3.50 3.68-3.90
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
3,3,3 bDGlcp 102.75/4.78 73.53/3.56 84.38/3.77 68.34/3.52 76.23/3.50 60.93/3.68-3.90
3,3 bDGlcp 102.75/4.78 73.53/3.56 84.38/3.77 68.34/3.52 76.23/3.50 60.93/3.68-3.90
3,6,6 bDGlcp 102.98/4.57 73.68/3.28 75.80/3.38 69.04/3.36 76.23/3.50 60.93/3.68-3.90
3,6 bDGlcp 102.75/4.78 73.53/3.56 75.13/3.65 68.34/3.52 76.08/3.65 69.80/3.88-4.18
3 bDGlcp 102.75/4.78 73.53/3.56 84.38/3.77 68.34/3.52 76.08/3.65 69.80/3.88-4.18
bDGlcp 102.75/4.78 73.53/3.56 84.38/3.77 68.34/3.52 76.23/3.50 60.93/3.68-3.90
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| 3,3,3 | bDGlcp | 4.78 | 3.56 | 3.77 | 3.52 | 3.50 | 3.68 3.90 |
| 3,3 | bDGlcp | 4.78 | 3.56 | 3.77 | 3.52 | 3.50 | 3.68 3.90 |
| 3,6,6 | bDGlcp | 4.57 | 3.28 | 3.38 | 3.36 | 3.50 | 3.68 3.90 |
| 3,6 | bDGlcp | 4.78 | 3.56 | 3.65 | 3.52 | 3.65 | 3.88 4.18 |
| 3 | bDGlcp | 4.78 | 3.56 | 3.77 | 3.52 | 3.65 | 3.88 4.18 |
| | bDGlcp | 4.78 | 3.56 | 3.77 | 3.52 | 3.50 | 3.68 3.90 |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 3,3,3 | bDGlcp | 102.75 | 73.53 | 84.38 | 68.34 | 76.23 | 60.93 |
| 3,3 | bDGlcp | 102.75 | 73.53 | 84.38 | 68.34 | 76.23 | 60.93 |
| 3,6,6 | bDGlcp | 102.98 | 73.68 | 75.80 | 69.04 | 76.23 | 60.93 |
| 3,6 | bDGlcp | 102.75 | 73.53 | 75.13 | 68.34 | 76.08 | 69.80 |
| 3 | bDGlcp | 102.75 | 73.53 | 84.38 | 68.34 | 76.08 | 69.80 |
| | bDGlcp | 102.75 | 73.53 | 84.38 | 68.34 | 76.23 | 60.93 |
|
There is only one chemically distinct structure:
Expand this record
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Yang G, Liu G-L, Wang S-J, Chi Z-M, Chi Z
Pullulan biosynthesis in yeast-like fungal cells is regulated by the transcriptional activator Msn2 and cAMP-PKA signaling pathway
International Journal of Biological Macromolecules 157 (2020)
591-603
Aureobasidium melanogenum P16
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum P16 (Δmsn25 mutant)
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum P16 (Δbcy11 mutant)
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum P16 (Δtpk1–7 mutant)
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum P16 (Δtpk2–8 mutant)
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum P16 (Δtpk1/Δtpk2–16 mutant)
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum P16 (Δtpk1/Δbcy1–3 mutant)
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum P16 (Δtpk2/Δbcy1–7 mutant)
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum P16 (Δac-2 mutant)
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum P16 (Δpde1/Δpde2–9 mutant)
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum P16 (Δtor13 mutant)
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum P16 (Δkss6 mutant)
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum P16 (Δste17 mutant)
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum P16 (Δsnf8 mutant)
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum P16 (Δhog4 mutant)
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum BH4
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum TPK1H-3
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum TPK2H-6
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum ACH-7
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum PDEH-5
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum TH13
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum MO17
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum BO1
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum TO1–8
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum TO2–13
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum TO12-2
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum PDEO-8
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum ACO3
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum TO9
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum UO7
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum UP19
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum BA7
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum BP3
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum BU11
(Ancestor NCBI TaxID 46634,
species name lookup)
Aureobasidium melanogenum BUGP1–9
(Ancestor NCBI TaxID 46634,
species name lookup)
Taxonomic group: fungi / Ascomycota
(Phylum: Ascomycota)
NCBI PubMed ID: 32339573Publication DOI: 10.1016/j.ijbiomac.2020.04.174Journal NLM ID: 7909578Publisher: Butterworth-Heinemann
Correspondence: Chi Z-M <chi

ouc.edu.cn>
Institutions: Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China, College of Marine Life Science, Ocean University of China, Qingdao, China, Jiangsu Key Laboratory of Marine Bioresources and Environment, Jiangsu Ocean University, Lianyungang, China
Pullulan is an important polysaccharide. Although its synthetic pathway in Aureobasidium melanogenum has been elucidated, the mechanism underlying its biosynthesis as regulated by signaling pathway and transcriptional regulator is still unknown. In this study, it was found that the expression of the UGP1 gene encoding UDPG-pyrophosphorylase (Ugp1) and other genes which were involved in pullulan biosynthesis was controlled by the transcriptional activator Msn2 in the nuclei of yeast-like fungal cells. The Ugp1 was a rate-limiting enzyme for pullulan biosynthesis. In addition, the activity and subcellular localization of the Msn2 were regulated only by the cAMP-PKA signaling pathway. When the cAMP-PKA activity was low, the Msn2 was localized in the nuclei, the UGP1 gene was highly expressed, and pullulan was actively synthesized. By contrast, when the cAMP-PKA activity was high, the Msn2 was localized in the cytoplasm and the UGP1 gene expression was disabled so that pullulan was stopped, but lipid biosynthesis was actively enhanced. This study was the first to report that pullulan and lipid biosynthesis in yeast-like fungal cells were regulated by the Msn2 and cAMP-PKA signaling pathway. Elucidating the regulation mechanisms was important to understand their functions and enhance pullulan and lipid biosynthesis.
pullulan biosynthesis, Msn2, UDPG-pyrophosphorylase, yeast-like fungi, cAMP-PKA
Structure type: polymer chemical repeating unit
Location inside paper: abstract
Trivial name: pullulan
Compound class: EPS, O-polysaccharide, cell wall polysaccharide, glucan, polysaccharide
Contained glycoepitopes: IEDB_140629,IEDB_142488,IEDB_144998,IEDB_146664,IEDB_420419,IEDB_420420,IEDB_420421,IEDB_857742,IEDB_983931,SB_192
Methods: PCR, DNA sequencing, HPLC, microscopy, cloning, CC, cell growth, fluorescence microscopy, confocal microscopy, fluorescence labeling, precipitation, centrifugation, qRT-PCR, optical density measurement, BLAST, deproteination, gene disruption
Enzymes that release or process the structure: adenylate cyclase, cAMP, Tpk1, Tpk2, Msn2, Ugp1, Pgm, AmAgs2
Biosynthesis and genetic data: biochemical data
Synthetic data: biosynthesis
Related record ID(s): 43176, 45035, 45814, 45934, 45961, 48425, 50614, 50622, 50623, 50625, 50628, 50633, 50635, 50638, 50643, 50658, 50659, 50660, 50670, 50673, 50674
NCBI Taxonomy refs (TaxIDs): 46634Reference(s) to other database(s): GTC:G71532WE, CCSD:
45938, CBank-STR:4859, GenDB:KY767023; GenDB:KY767024
Show glycosyltransferases
There is only one chemically distinct structure:
Expand this record
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Golovchenko VV, Naranmandakh S, Ganbaatar J, Prilepskii AY, Burygin GL, Chizhov AO, Shashkov AS
Structural investigation and comparative cytotoxic activity of water-soluble polysaccharides from fruit bodies of the medicinal fungus quinine conk
Phytochemistry 175 (2020)
ID 112313
|
b-D-Glcp-(1-6)-+
|
-3)-b-D-Glcp-(1-3)-b-D-Glcp-(1-3)-b-D-Glcp-(1- |
Show graphically |
Fomitopsis officinalis
(NCBI TaxID 270279,
species name lookup)
Taxonomic group: fungi / Basidiomycota
(Phylum: Basidiomycota)
Organ / tissue: fruiting body
NCBI PubMed ID: 32353551Publication DOI: 10.1016/j.phytochem.2020.112313Journal NLM ID: 0151434Publisher: Elsevier
Correspondence: Golovchenko VV <lemnan

mail.ru>
Institutions: N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia, Institute of Biochemistry and Physiology of Plants and Microorganisms, Russian Academy of Sciences, Saratov, Russia, Institute of Chemistry and Chemical Technology, the Mongolian Academy of Sciences, Ulaanbaatar, Mongolia, Institute of Physiology of Komi Science Centre of The Urals Branch of the Russian Academy of Sciences, FRC Komi SC UB RAS, Syktyvkar, Russia, School of Arts and Sciences, National University of Mongolia, Ulaanbaatar, Mongolia, N.I. Vavilov Saratov State Agrarian University, Saratov, Russia
The structures and cytotoxic activities of water-soluble polysaccharides were investigated to search for biologically active polysaccharides from the fruit bodies of quinine conks (Fomitopsis officinalis). The decoctions of this medical fungus are actively used in folk medicine in many countries and traditional Chinese medicine. From the fungal extract we prepared, only branched β-glucan had cytotoxic activity among all the water-soluble polysaccharides. This glucan is characterized by a regular structure. Its backbone is formed by 1,3-linked β-D-Glcp residues, of which every third residue is substituted at O-6 by a single β-D-Glcp residue. It has a triple helix conformation according to the data obtained from a colorimetric assay with Congo red dye and is characterized by a high-weight average molar mass (Mw > 800 kDa). β-Glucan possessed cytotoxic activity against HeLa cells (IC50 = 318 ± 47 μg/mL) and induced the formation of apoptotic bodies around most cancer cells at a concentration of 200 μg/mL. It should be noted that extraction with boiling water, which is usually used to obtain extracts and decoctions, is unable to isolate active β-glucan. Active β-glucan can be obtained in an individual state by cold alkali extraction after dehydration of the fruit bodies and removal of the components extractable by boiling water.
NMR spectroscopy, β-glucan, Basidiomycota, HeLa cells, Fomitopsis officinalis, Fomitopsidaceae, fucosylated xylomannan, heteropolysaccharides
Structure type: structural motif or average structure
Location inside paper: structure 1
Trivial name: pachyman, β-1,3/1,6-glucan, schizophyllan, pleuran, TM8, grifolan, lentinan, scleroglucan, grifolan, schizophyllan, tylopilan, pleuran, a water soluble polysaccharide, alkaline-soluble polysaccharide, (1,3)-β-D-glucan, laminarin
Compound class: O-polysaccharide, cell wall polysaccharide, glucan, polysaccharide, β-glucan, β-D-glucan (GLP)
Contained glycoepitopes: IEDB_1397514,IEDB_141806,IEDB_142488,IEDB_146664,IEDB_153543,IEDB_158555,IEDB_161166,IEDB_2278476,IEDB_2278477,IEDB_241101,IEDB_558869,IEDB_857743,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, methylation, NMR-2D, GC-MS, acid hydrolysis, HPLC, extraction, acetylation, methylation analysis, SEC, reduction, fluorescence microscopy, cytotoxicity assay, precipitation, phenol-sulfuric acid assay, spectrophotometry, evaporation, Congo Red assay, centrifugation, Lowry method, deproteination
Biological activity: polysaccharide possessed cytotoxic activity against HeLa cells with IC50 of 318±47 μg/mL and IC90 of 520±42 μg/mL
Comments, role: the published polymerization frame of a chemical repeating unit was shifted for compatibility with other records
Related record ID(s): 50844
NCBI Taxonomy refs (TaxIDs): 270279Reference(s) to other database(s): GTC:G66305IS, CCSD:
6483, CBank-STR:10801
Show glycosyltransferases
NMR conditions: in DMSO-d6 at 333 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
3,3 bDGlcp 102.83 72.37-72.47 85.87-86.57 68.37 75.88 60.61-60.74
3,6 bDGlcp 102.83 73.50 76.15 70.00 76.52 60.90
3 bDGlcp 102.76 72.62 86.18-86.57 68.49 74.54 68.27
bDGlcp 102.83 72.37-72.47 85.87-86.57 68.37 75.88 60.61-60.74
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
3,3 bDGlcp 4.54 3.31 3.50 3.30 3.28 3.47-3.71
3,6 bDGlcp 4.23 3.02 3.19 3.09 3.12 3.47-3.69
3 bDGlcp 4.51 3.26 3.49 3.29 3.53 3.54-4.10
bDGlcp 4.54 3.31 3.50 3.30 3.28 3.47-3.71
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
3,3 bDGlcp 102.83/4.54 72.37-72.47/3.31 85.87-86.57/3.50 68.37/3.30 75.88/3.28 60.61-60.74/3.47-3.71
3,6 bDGlcp 102.83/4.23 73.50/3.02 76.15/3.19 70.00/3.09 76.52/3.12 60.90/3.47-3.69
3 bDGlcp 102.76/4.51 72.62/3.26 86.18-86.57/3.49 68.49/3.29 74.54/3.53 68.27/3.54-4.10
bDGlcp 102.83/4.54 72.37-72.47/3.31 85.87-86.57/3.50 68.37/3.30 75.88/3.28 60.61-60.74/3.47-3.71
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| 3,3 | bDGlcp | 4.54 | 3.31 | 3.50 | 3.30 | 3.28 | 3.47 3.71 |
| 3,6 | bDGlcp | 4.23 | 3.02 | 3.19 | 3.09 | 3.12 | 3.47 3.69 |
| 3 | bDGlcp | 4.51 | 3.26 | 3.49 | 3.29 | 3.53 | 3.54 4.10 |
| | bDGlcp | 4.54 | 3.31 | 3.50 | 3.30 | 3.28 | 3.47 3.71 |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 3,3 | bDGlcp | 102.83 | 72.37 72.47 | 85.87 86.57 | 68.37 | 75.88 | 60.61 60.74 |
| 3,6 | bDGlcp | 102.83 | 73.50 | 76.15 | 70.00 | 76.52 | 60.90 |
| 3 | bDGlcp | 102.76 | 72.62 | 86.18 86.57 | 68.49 | 74.54 | 68.27 |
| | bDGlcp | 102.83 | 72.37 72.47 | 85.87 86.57 | 68.37 | 75.88 | 60.61 60.74 |
|
There is only one chemically distinct structure:
Expand this record
Collapse this record
Golovchenko VV, Naranmandakh S, Ganbaatar J, Prilepskii AY, Burygin GL, Chizhov AO, Shashkov AS
Structural investigation and comparative cytotoxic activity of water-soluble polysaccharides from fruit bodies of the medicinal fungus quinine conk
Phytochemistry 175 (2020)
ID 112313
|
a-D-Fucp-(1-2)-b-D-Xylp-(1-4)-+
|
-3)-a-D-Manp-(1-3)-a-D-Manp-(1-3)-a-D-Manp-(1-3)-a-D-Manp-(1- |
Show graphically |
Fomitopsis officinalis
(NCBI TaxID 270279,
species name lookup)
Taxonomic group: fungi / Basidiomycota
(Phylum: Basidiomycota)
Organ / tissue: fruiting body
NCBI PubMed ID: 32353551Publication DOI: 10.1016/j.phytochem.2020.112313Journal NLM ID: 0151434Publisher: Elsevier
Correspondence: Golovchenko VV <lemnan

mail.ru>
Institutions: N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia, Institute of Biochemistry and Physiology of Plants and Microorganisms, Russian Academy of Sciences, Saratov, Russia, Institute of Chemistry and Chemical Technology, the Mongolian Academy of Sciences, Ulaanbaatar, Mongolia, Institute of Physiology of Komi Science Centre of The Urals Branch of the Russian Academy of Sciences, FRC Komi SC UB RAS, Syktyvkar, Russia, School of Arts and Sciences, National University of Mongolia, Ulaanbaatar, Mongolia, N.I. Vavilov Saratov State Agrarian University, Saratov, Russia
The structures and cytotoxic activities of water-soluble polysaccharides were investigated to search for biologically active polysaccharides from the fruit bodies of quinine conks (Fomitopsis officinalis). The decoctions of this medical fungus are actively used in folk medicine in many countries and traditional Chinese medicine. From the fungal extract we prepared, only branched β-glucan had cytotoxic activity among all the water-soluble polysaccharides. This glucan is characterized by a regular structure. Its backbone is formed by 1,3-linked β-D-Glcp residues, of which every third residue is substituted at O-6 by a single β-D-Glcp residue. It has a triple helix conformation according to the data obtained from a colorimetric assay with Congo red dye and is characterized by a high-weight average molar mass (Mw > 800 kDa). β-Glucan possessed cytotoxic activity against HeLa cells (IC50 = 318 ± 47 μg/mL) and induced the formation of apoptotic bodies around most cancer cells at a concentration of 200 μg/mL. It should be noted that extraction with boiling water, which is usually used to obtain extracts and decoctions, is unable to isolate active β-glucan. Active β-glucan can be obtained in an individual state by cold alkali extraction after dehydration of the fruit bodies and removal of the components extractable by boiling water.
NMR spectroscopy, β-glucan, Basidiomycota, HeLa cells, Fomitopsis officinalis, Fomitopsidaceae, fucosylated xylomannan, heteropolysaccharides
Structure type: structural motif or average structure
Location inside paper: structure 2
Compound class: polysaccharide
Contained glycoepitopes: IEDB_114701,IEDB_115015,IEDB_115576,IEDB_130701,IEDB_140116,IEDB_142489,IEDB_144983,IEDB_149135,IEDB_152206,IEDB_164174,IEDB_167188,IEDB_174332,IEDB_76933,IEDB_983930,SB_197,SB_44,SB_67,SB_72,SB_86
Methods: 13C NMR, 1H NMR, methylation, NMR-2D, GC-MS, acid hydrolysis, HPLC, extraction, acetylation, methylation analysis, SEC, reduction, fluorescence microscopy, cytotoxicity assay, precipitation, phenol-sulfuric acid assay, spectrophotometry, evaporation, Congo Red assay, centrifugation, Lowry method, deproteination
Related record ID(s): 50843
NCBI Taxonomy refs (TaxIDs): 270279Reference(s) to other database(s): GTC:G19611QH
Show glycosyltransferases
NMR conditions: in D2O at 340 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
3,3,3 aDManp 102.5 71.0 79.6 67.3-67.5 74.8 62.4
3,3 aDManp 102.5 71.0 79.6 67.3-67.5 74.8 62.4
3,4,2 aDFucp 100.6 69.6 71.2 73.1 68.2 16.8
3,4 bDXylp 102.7 79.5 77.8 70.7 66.3
3 aDManp 103.2 71.0 77.0 73.9 74.4 61.6
aDManp 102.5 71.0 79.6 67.3-67.5 74.8 62.4
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
3,3,3 aDManp 5.17 4.20 4.03 3.82-3.86 3.81-3.86 3.78-3.91
3,3 aDManp 5.17 4.20 4.03 3.82-3.86 3.81-3.86 3.78-3.91
3,4,2 aDFucp 5.32 3.84 3.80 3.81 4.28 1.27
3,4 bDXylp 4.46 3.46 3.69 3.65 3.31-3.97
3 aDManp 5.14 4.23 4.13 3.90 4.05 3.85-3.93
aDManp 5.17 4.20 4.03 3.82-3.86 3.81-3.86 3.78-3.91
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
3,3,3 aDManp 102.5/5.17 71.0/4.20 79.6/4.03 67.3-67.5/3.82-3.86 74.8/3.81-3.86 62.4/3.78-3.91
3,3 aDManp 102.5/5.17 71.0/4.20 79.6/4.03 67.3-67.5/3.82-3.86 74.8/3.81-3.86 62.4/3.78-3.91
3,4,2 aDFucp 100.6/5.32 69.6/3.84 71.2/3.80 73.1/3.81 68.2/4.28 16.8/1.27
3,4 bDXylp 102.7/4.46 79.5/3.46 77.8/3.69 70.7/3.65 66.3/3.31-3.97
3 aDManp 103.2/5.14 71.0/4.23 77.0/4.13 73.9/3.90 74.4/4.05 61.6/3.85-3.93
aDManp 102.5/5.17 71.0/4.20 79.6/4.03 67.3-67.5/3.82-3.86 74.8/3.81-3.86 62.4/3.78-3.91
1H NMR data:
| Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| 3,3,3 | aDManp | 5.17 | 4.20 | 4.03 | 3.82 3.86 | 3.81 3.86 | 3.78 3.91 |
| 3,3 | aDManp | 5.17 | 4.20 | 4.03 | 3.82 3.86 | 3.81 3.86 | 3.78 3.91 |
| 3,4,2 | aDFucp | 5.32 | 3.84 | 3.80 | 3.81 | 4.28 | 1.27 |
| 3,4 | bDXylp | 4.46 | 3.46 | 3.69 | 3.65 | 3.31 3.97 | |
| 3 | aDManp | 5.14 | 4.23 | 4.13 | 3.90 | 4.05 | 3.85 3.93 |
| | aDManp | 5.17 | 4.20 | 4.03 | 3.82 3.86 | 3.81 3.86 | 3.78 3.91 |
|
13C NMR data:
| Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| 3,3,3 | aDManp | 102.5 | 71.0 | 79.6 | 67.3 67.5 | 74.8 | 62.4 |
| 3,3 | aDManp | 102.5 | 71.0 | 79.6 | 67.3 67.5 | 74.8 | 62.4 |
| 3,4,2 | aDFucp | 100.6 | 69.6 | 71.2 | 73.1 | 68.2 | 16.8 |
| 3,4 | bDXylp | 102.7 | 79.5 | 77.8 | 70.7 | 66.3 | |
| 3 | aDManp | 103.2 | 71.0 | 77.0 | 73.9 | 74.4 | 61.6 |
| | aDManp | 102.5 | 71.0 | 79.6 | 67.3 67.5 | 74.8 | 62.4 |
|
There is only one chemically distinct structure:
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