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1. (Article ID: 5054)
Wang X, Kondakova AN, Zhu Y, Knirel YA, Han A
Structure and gene cluster of the O-antigen in Comamonas aquatica CJG
Microbiology 163(11) (2017)
1637-1640
Genus Comamonas is a group of bacteria that are able to degrade a variety of environmental waste. Comamonas aquatica CJG (C. aquatica) in this genus is able to absorb low-density lipoprotein but not high-density lipoprotein of human serum. Using 1H and 13C NMR spectroscopy, we found that the O-polysaccharide (O-antigen) of this bacterium is comprised of a disaccharide repeat (O-unit) of d-glucose and 2-O-acetyl-l-rhamnose, which is shared by Serratia marcescens O6. The O-antigen gene cluster of C. aquatica, which is located between coaX and tnp4 genes, contains rhamnose synthesis genes, glycosyl and acetyl transferase genes, and ATP-binding cassette transporter genes, and therefore is consistent with the O-antigen structure determined here.
O-antigen, gene cluster, O-Polysaccharide structure, Comamonas aquatica, serum absorbance
NCBI PubMed ID: 29034863Publication DOI: 10.1099/mic.0.000551Journal NLM ID: 0376646Publisher: Washington, DC: Kluwer Academic/Plenum Publishers
Correspondence: Aidong Han
xmu.edu.cn>; Yuriy A. Knirel gmail.com>
Institutions: N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia, State Key Laboratory for Cellular Stress Biology, School of Life Sciences, Xiamen University, Xiamen, PR China, Center for Qinhao Research, Guangzhou University of Chinese Medicine, Guangzhou, PR China
Methods: 13C NMR, 1H NMR, GLC-MS, NMR-2D, sugar analysis, acid hydrolysis, GPC, function analysis of gene clusters
The publication contains the following compound(s):
- Compound ID: 1960
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G47977HN, GlycomeDB:
5083
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