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Varbanets LD, Vasil'ev VN, Brovarskaya OS
Characterization of lipopolysaccharides from Ralstonia solanacearum
Mikrobiologiia = Microbiology [Russian] 72(1) (2003)
12-17
|
-3)-a-D-GlcpNAc-(1-2)-a-L-Rhap-(1-2)-a-L-Rhap-(1-3)-a-L-Rhap-(1- |
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Ralstonia solanacearum ICMP 6524
(Ancestor NCBI TaxID 305,
species name lookup)
Ralstonia solanacearum ICMP 8115
(Ancestor NCBI TaxID 305,
species name lookup)
Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
The structure was elucidated in this paperNCBI PubMed ID: 12698787Journal NLM ID: 0376652Publisher: Moskva: Izdatelstvo Nauka
Institutions: Zabolotnyi Institute of Microbiology and Virology, National Academy of Sciences of Ukraine, ul. Zabolotnogo 154, Kiev, 252143 Ukraine, Zabolotnyi Institute of Microbiology and Virology, National Academy of Sciences of Ukraine, ul. Zabolotnogo 154, Kiev, 252143 Ukraine.
Lipopolysaccharides (LPSs) from four strains of Ralstonia solanacearum belonging to biovar I (ICMP 6524, 8115, 5712, and 8169) were isolated and investigated. The structural components of the LPS molecule, such as lipid A, the core oligosaccharide, and O-specific polysaccharide (O-PS), were obtained after mild acid hydrolysis of the LPS preparations. In lipid A from all the LPS samples studied, 3-hydroxyhexadecanoic, 2-hydroxyhexadecanoic, tetradecanoic, and hexadecanoic fatty acids prevailed. The dominant monosaccharides of the core oligosaccharides of all of the strains studied were rhamnose, glucose, glucosamine, 2-keto-3-deoxyoctulosonic acid, and heptose. However, individual strains varied in the content of galactose, ribose, xylose, and arabinose. Three types of the O-PS structure were established, which differed in their configuration (alpha or beta), as well as in the type of the bond between glucosamine and rhamnose residues (1→2 or 1→3).
Lipopolysaccharide, lipopolysaccharides, characterization, Ralstonia, Ralstonia solanacearum
Structure type: polymer chemical repeating unit
Location inside paper: p.16, structure 1
Trivial name: neutral glycan
Compound class: O-polysaccharide, O-antigen, LPS, cell wall polysaccharide
Contained glycoepitopes: IEDB_133754,IEDB_136105,IEDB_141807,IEDB_151531,IEDB_225177,IEDB_885823
Methods: 13C NMR, 1H NMR, methylation, Smith degradation, literature data mining
Related record ID(s): 5276, 5277, 5339, 5340, 8804, 108533, 114285, 115997, 117543
NCBI Taxonomy refs (TaxIDs): 305Reference(s) to other database(s): GTC:G64895PS, GlycomeDB:
25162, CCSD:
12546, CBank-STR:7979
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There is only one chemically distinct structure:
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Varbanets LD, Vasil'ev VN, Brovarskaya OS
Characterization of lipopolysaccharides from Ralstonia solanacearum
Mikrobiologiia = Microbiology [Russian] 72(1) (2003)
12-17
|
-3)-b-D-GlcpNAc-(1-3)-a-L-Rhap-(1-2)-a-L-Rhap-(1-3)-a-L-Rhap-(1- |
Show graphically |
Ralstonia solanacearum ICMP 5712
(Ancestor NCBI TaxID 305,
species name lookup)
Ralstonia solanacearum ICMP 8169
(Ancestor NCBI TaxID 305,
species name lookup)
Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
NCBI PubMed ID: 12698787Journal NLM ID: 0376652Publisher: Moskva: Izdatelstvo Nauka
Institutions: Zabolotnyi Institute of Microbiology and Virology, National Academy of Sciences of Ukraine, ul. Zabolotnogo 154, Kiev, 252143 Ukraine, Zabolotnyi Institute of Microbiology and Virology, National Academy of Sciences of Ukraine, ul. Zabolotnogo 154, Kiev, 252143 Ukraine.
Lipopolysaccharides (LPSs) from four strains of Ralstonia solanacearum belonging to biovar I (ICMP 6524, 8115, 5712, and 8169) were isolated and investigated. The structural components of the LPS molecule, such as lipid A, the core oligosaccharide, and O-specific polysaccharide (O-PS), were obtained after mild acid hydrolysis of the LPS preparations. In lipid A from all the LPS samples studied, 3-hydroxyhexadecanoic, 2-hydroxyhexadecanoic, tetradecanoic, and hexadecanoic fatty acids prevailed. The dominant monosaccharides of the core oligosaccharides of all of the strains studied were rhamnose, glucose, glucosamine, 2-keto-3-deoxyoctulosonic acid, and heptose. However, individual strains varied in the content of galactose, ribose, xylose, and arabinose. Three types of the O-PS structure were established, which differed in their configuration (alpha or beta), as well as in the type of the bond between glucosamine and rhamnose residues (1→2 or 1→3).
Lipopolysaccharide, lipopolysaccharides, characterization, Ralstonia, Ralstonia solanacearum
Structure type: polymer chemical repeating unit
Location inside paper: p.16, structure 2
Compound class: O-polysaccharide, O-antigen
Contained glycoepitopes: IEDB_125613,IEDB_133754,IEDB_135813,IEDB_136105,IEDB_137340,IEDB_141807,IEDB_141815,IEDB_151531,IEDB_225177,IEDB_885823
Methods: 13C NMR, 1H NMR, methylation, Smith degradation, literature data mining
Comments, role: minor O-repeats (3:7)
Related record ID(s): 5280, 5340, 8805, 108528, 110889, 117544
NCBI Taxonomy refs (TaxIDs): 305Reference(s) to other database(s): GTC:G96169XQ, GlycomeDB:
3458
Show glycosyltransferases
There is only one chemically distinct structure:
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Varbanets LD, Vasil'ev VN, Brovarskaya OS
Characterization of lipopolysaccharides from Ralstonia solanacearum
Mikrobiologiia = Microbiology [Russian] 72(1) (2003)
12-17
|
b-L-Xylp-(1-4)-+
|
-3)-b-D-GlcpNAc-(1-3)-a-L-Rhap-(1-2)-a-L-Rhap-(1-3)-a-L-Rhap-(1- |
Show graphically |
Ralstonia solanacearum ICMP 5712
(Ancestor NCBI TaxID 305,
species name lookup)
Ralstonia solanacearum ICMP 8169
(Ancestor NCBI TaxID 305,
species name lookup)
Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
The structure was elucidated in this paperNCBI PubMed ID: 12698787Journal NLM ID: 0376652Publisher: Moskva: Izdatelstvo Nauka
Institutions: Zabolotnyi Institute of Microbiology and Virology, National Academy of Sciences of Ukraine, ul. Zabolotnogo 154, Kiev, 252143 Ukraine, Zabolotnyi Institute of Microbiology and Virology, National Academy of Sciences of Ukraine, ul. Zabolotnogo 154, Kiev, 252143 Ukraine.
Lipopolysaccharides (LPSs) from four strains of Ralstonia solanacearum belonging to biovar I (ICMP 6524, 8115, 5712, and 8169) were isolated and investigated. The structural components of the LPS molecule, such as lipid A, the core oligosaccharide, and O-specific polysaccharide (O-PS), were obtained after mild acid hydrolysis of the LPS preparations. In lipid A from all the LPS samples studied, 3-hydroxyhexadecanoic, 2-hydroxyhexadecanoic, tetradecanoic, and hexadecanoic fatty acids prevailed. The dominant monosaccharides of the core oligosaccharides of all of the strains studied were rhamnose, glucose, glucosamine, 2-keto-3-deoxyoctulosonic acid, and heptose. However, individual strains varied in the content of galactose, ribose, xylose, and arabinose. Three types of the O-PS structure were established, which differed in their configuration (alpha or beta), as well as in the type of the bond between glucosamine and rhamnose residues (1→2 or 1→3).
Lipopolysaccharide, lipopolysaccharides, characterization, Ralstonia, Ralstonia solanacearum
Structure type: polymer chemical repeating unit
Location inside paper: p.16, structure 3
Compound class: O-polysaccharide, O-antigen
Contained glycoepitopes: IEDB_125613,IEDB_133754,IEDB_135813,IEDB_136105,IEDB_137340,IEDB_141807,IEDB_141815,IEDB_151531,IEDB_225177,IEDB_885823
Methods: 13C NMR, 1H NMR, methylation, Smith degradation, literature data mining
Comments, role: major type of O-repeats (7:3)
Related record ID(s): 5280, 5339, 8806, 108527, 110890, 117545
NCBI Taxonomy refs (TaxIDs): 305Reference(s) to other database(s): GTC:G80396BF, GlycomeDB:
15650
Show glycosyltransferases
There is only one chemically distinct structure:
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