Found 2 publications.
Displayed publications from 1 to 2
Expand all publications
Collapse all publications
Show all as text (SweetDB notation)
Show all graphically (SNFG notation)
1. (Article ID: 552)
De Castro C, Carannante A, Lanzetta R, Nunziata R, Piscopo V, Parrilli M
Elucidation of two O-chain structures from the lipopolysaccharide fraction of Agrobacterium tumefaciens F/1
Carbohydrate Research 339(14) (2004)
2451-2455
Agrobacterium tumefaciens F/1 produces two different O-chains, both are constituted of rhamnose and glucosamine: the less abundant has a linear disaccharidic repeating unit 3)-α-L-Rhap-(1→3)-β-D-GlcpNAc-(1→ and the second one 4)-α-L-Rhap-(1→3)-β-D-GlcpNAc-(1→. The two intact antigenic moieties were studied in mixture by 2D NMR. Additional supporting data were obtained by periodate degradation, the major component was cleaved selectively, leading to a glucosamine glycoside, whereas the minor one was recovered unaffected.
LPS, structure, O-chain, Agrobacterium tumefaciens, Smith degradation
NCBI PubMed ID: 15388361Journal NLM ID: 0043535Publisher: Elsevier
Correspondence: decastro

unina.it
Institutions: Dipartimento di Chimica Organica e Biochimica, Universita di Napoli Federico II, via Cinthia 4, 80126 Napoli, Italy
Methods: methylation, NMR-2D, NMR, sugar analysis, Smith degradation
The publication contains the following compound(s):
- Compound ID: 660
Structure type: polymer chemical repeating unit
Trivial name: repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G35373OX, GlycomeDB:
25158
- Compound ID: 1770
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G50089GG, GlycomeDB:
25159, CCSD:
12534, CBank-STR:12551
Expand this publication
Collapse this publication
2. (Article ID: 3458)
De Castro C, Molinaro A, Lanzetta R, Silipo A, Parrilli M
Lipopolysaccharide structures from Agrobacterium and Rhizobiaceae species
Carbohydrate Research 343(12) (2008)
1924-1933
This review reports and discusses the structural and the biological data available for the lipopolysaccharides from the Gram-negative bacterium Agrobacterium together with those of other related Rhizobiaceae species
Lipopolysaccharide, Rhizobium, symbiosis, Agrobacterium, Tumor induction
NCBI PubMed ID: 18353297Publication DOI: 10.1016/j.carres.2008.01.036Journal NLM ID: 0043535Publisher: Elsevier
Correspondence: decastro

unina.it; molinaro

unina.it
Institutions: Department of Organic Chemistry and Biochemistry, University of Naples Federico II, Complesso Universitario Monte Sant' Angelo, Via Cinthia 4, 80126 Napoli, Italy
Methods: 13C NMR, 1H NMR, NMR-2D, MS, composition analysis, NMR-1D
The publication contains the following compound(s):
- Compound ID: 5
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G67980NV, GlycomeDB:
25177
- Compound ID: 7741
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G43823SI, GlycomeDB:
36925
- Compound ID: 7749
|
a-D-GalpA-(1-5)-+
|
a-D-GalpA-(1-4)-a-Kdop-(2-4)-+
|
a-D-GalpA-(1-4)-+ |
| |
Subst-(1-3)-a-L-Fucp-(1-4)-a-D-Manp-(1-3)-b-D-QuipNAc-(1-4)-a-Kdop-(2-6)-a-D-Galp-(1-6)-a-D-Manp-(1-5)-a-Kdop-(2--/(2->6)lipid A/
Subst = O-antigen |
Show graphically |
Structure type: oligomer
Aglycon: (2->6)lipid A
Compound class: core oligosaccharide
- Compound ID: 7753
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G05049RE, GlycomeDB:
36934
- Compound ID: 1445
Structure type: polymer chemical repeating unit
Trivial name: L-rhamnan, water-soluble EPS
Compound class: EPS, O-polysaccharide, O-antigen, polysaccharide, rhamnan
Reference(s) to other database(s): GTC:G60116ZJ, GlycomeDB:
27349
- Compound ID: 1530
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G28333MQ, GlycomeDB:
27374
- Compound ID: 7738
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G85014VU
- Compound ID: 660
Structure type: polymer chemical repeating unit
Trivial name: repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G35373OX, GlycomeDB:
25158
- Compound ID: 1770
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G50089GG, GlycomeDB:
25159, CCSD:
12534, CBank-STR:12551
- Compound ID: 2288
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G55399LS, GlycomeDB:
25360
- Compound ID: 7744
|
a-Kdop-(2-4)-+
|
b-D-GlcpA6NH2-(1-3)-b-D-Glcp-(1-4)-+ | P-4)-+
| | |
3HO2,3MePro-5-oxo-(1-3)-b-D-Quip3N-(1-2)-a-L-Rhap-(1-4)-a-D-GalpA6NH2-(1-6)-a-D-Galp-(1-5)-a-Kdop-(2-6)-b-D-GlcpN-(1-6)-a-D-GlcpN-(1-P |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
- Compound ID: 7742
Structure type: homopolymer
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G25607OL, GlycomeDB:
26285
- Compound ID: 7752
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G02622MM, GlycomeDB:
36933
- Compound ID: 7754
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G84677QL, GlycomeDB:
36935
- Compound ID: 7746
|
?%b-D-GlcpN-(1-2)-b-D-Galp-(1-4)-b-D-Galp-(1-8)-a-Kdop-(2-4)-+ P-4)-+
| |
?%a-L-Rhap-(1-2)-a-L-Rhap-(1-2)-a-L-Rhap-(1-2)-a-L-Rhap-(1-3)-a-L-Rhap-(1-3)-a-D-Manp-(1-5)-a-Kdop-(2-6)-b-D-GlcpN-(1-6)-a-D-GlcpN-(1-P |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GlycomeDB:
36929
- Compound ID: 7745
|
?%b-D-Galp-(1-8)-a-Kdop-(2-4)-+ P-4)-+
| |
?%a-D-Manp-(1-6)-a-D-Manp-(1-5)-a-Kdop-(2-6)-b-D-GlcpN-(1-6)-a-D-GlcpN-(1-P |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GlycomeDB:
27992
- Compound ID: 7737
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G48686WU, GlycomeDB:
25386
- Compound ID: 7739
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G17417PD, GlycomeDB:
36924
- Compound ID: 7740
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
- Compound ID: 1443
Structure type: homopolymer
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G24651SF, GlycomeDB:
27347
- Compound ID: 5478
|
a-D-ManpNAc-(1-2)-+
|
-3)-a-L-Rhap-(1-3)-a-L-Rhap-(1-4)-b-D-GlcpNAc-(1-3)-a-L-Rhap-(1- |
Show graphically |
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G83001VX, GlycomeDB:
6724
- Compound ID: 7743
|
a-D-Manp-(1-2)-+
|
-3)-a-L-Rhap-(1-3)-a-L-Fucp-(1-3)-a-L-Fucp-(1- |
Show graphically |
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G19308IN, GlycomeDB:
36926
- Compound ID: 7747
|
b-D-Galp-(1-8)-a-Kdop-(2-4)-+
|
a-D-Manp-(1-6)-+ | P-4)-+
| | |
a-D-Manp-(1-2)-a-D-Manp-(1-3)-a-D-Manp-(1-3)-a-D-Manp-(1-5)-a-Kdop-(2-6)-b-D-GlcpN-(1-6)-a-D-GlcpN-(1-P |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GlycomeDB:
36930
- Compound ID: 7748
|
?%a-D-GalpA3Ac-(1-7)-a-Kdop-(2-4)-+
|
a-L-Fucp-(1-4)-+ a-3dlyxHepp-ulosaric-(2-3)-a-D-GalpA-(1-3)-b-D-Glcp-(1-4)-+ | P-4)-+
| | | |
a-L-Fucp-(1-2)-b-D-Galp3(%)Ac4(%)Ac-(1-3)-a-D-GlcpN-(1-4)-b-D-GlcpA-(1-4)-a-D-GalpA-(1-3)-b-D-Glcp-(1-6)-a-D-Glcp-(1-5)-a-Kdop-(2-6)-b-D-GlcpN-(1-6)-a-D-GlcpN-(1-P |
Show graphically |
Structure type: oligomer
Compound class: core oligosaccharide
- Compound ID: 7750
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G28131QA, GlycomeDB:
36931
- Compound ID: 7751
Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G10217NL, GlycomeDB:
36932
Expand this publication
Collapse this publication
Total list of publication IDs on all result pages of the current query:
Total list of corresponding CSDB IDs (permanent record IDs):
Execution: <1 sec