Found 1 publication.
Displayed publication 1
Expand all publications
Collapse all publications
Show all as text (SweetDB notation)
Show all graphically (SNFG notation)
1. (Article ID: 5751)
Clarke BR, Ovchinnikova OG, Sweeney RP, Kamski-Hennekam ER, Gitalis R, Mallette E, Kelly SD, Lowary TL, Kimber MS, Whitfield C
A bifunctional O-antigen polymerase structure reveals a new glycosyltransferase family
Nature Chemical Biology 16(4) (2020)
450-457
Lipopolysaccharide O-antigen is an attractive candidate for immunotherapeutic strategies targeting antibiotic-resistant Klebsiella pneumoniae. Several K. pneumoniae O-serotypes are based on a shared O2a-antigen backbone repeating unit: (→3)-α-Galp-(1→3)-β-Galf-(1→). O2a antigen is synthesized on undecaprenol diphosphate in a pathway involving the O2a polymerase, WbbM, before its export by an ATP-binding cassette transporter. This dual domain polymerase possesses a C-terminal galactopyranosyltransferase resembling known GT8 family enzymes, and an N-terminal DUF4422 domain identified here as a galactofuranosyltransferase defining a previously unrecognized family (GT111). Functional assignment of DUF4422 explains how galactofuranose is incorporated into various polysaccharides of importance in vaccine production and the food industry. In the 2.1-Å resolution structure, three WbbM protomers associate to form a flattened triangular prism connected to a central stalk that orients the active sites toward the membrane. The biochemical, structural and topological properties of WbbM offer broader insight into the mechanisms of assembly of bacterial cell-surface glycans.
Lipopolysaccharide, O-antigen, mechanism, galactofuranose, glycosyltransferase, Klebsiella pneumoniae, O-antigen polymerase, vaccine, transporter, glycans, O-serotypes, undecaprenol
NCBI PubMed ID: 32152541Publication DOI: 10.1038/s41589-020-0494-0Journal NLM ID: 101231976Publisher: New York, NY: Nature Publishing Group
Correspondence: mkimber

uoguelph.ca; cwhitfie

uoguelph.ca
Institutions: Department of Chemistry, University of Alberta, Edmonton, AB, Canada, Department of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada
Methods: 13C NMR, 1H NMR, gel filtration, NMR-2D, PCR, SDS-PAGE, DNA techniques, ESI-MS, biochemical methods, bioinformatic analysis, enzyme structure, topological information
The publication contains the following compound(s):
- Compound ID: 14470
|
{{{-a-D-Galp-(1-3)-b-D-Galp-(1-3)-}}}b-D-Galf-(1-3)-{{{-b-D-Galf-(1-3)-a-D-Galp-(1-3)-}}}b-D-Galf-(1-3)-a-D-Galp |
Show graphically |
Structure type: oligomer
Compound class: O-antigen
Reference(s) to other database(s): GTC:G75870DJ
- Compound ID: 362
Structure type: polymer chemical repeating unit
Trivial name: D-galactan I, galactan I, galactan, D-galactan, microbial carbohydrate determinants, D-galactan-I
Compound class: CPS, EPS, O-polysaccharide, O-antigen, LPS, cell wall polysaccharide
Reference(s) to other database(s): GTC:G85324FU, GlycomeDB:
665
- Compound ID: 8773
|
---P--6)-b-D-Galf-(1-3)-b-D-Galp-(1-6)-b-D-Galf-(1-6)-b-D-GalpNAc-(1-3)-a-D-Galp-(1-2)-Rib-ol-(5-P- |
Show graphically |
Structure type: polymer chemical repeating unit
Trivial name: receptor polysaccharide (RPS)
Compound class: cell wall polysaccharide
Reference(s) to other database(s): GlycomeDB:
37311
- Compound ID: 2685
|
b-D-Galf-(1-6)-+
|
-3)-b-D-Galf-(1-3)-b-D-Galp-(1-4)-a-D-GlcpNAc-(1-3)-a-L-Rhap-(1-3)-a-D-Galp-(1- |
Show graphically |
Structure type: polymer chemical repeating unit
Trivial name: L919/A
Compound class: CPS, EPS
Reference(s) to other database(s): GTC:G92965JP, GlycomeDB:
34806
- Compound ID: 9371
Structure type: polymer chemical repeating unit
Trivial name: PAM galactan, PAM-galactan
Compound class: EPS
Reference(s) to other database(s): GTC:G49258KC
- Compound ID: 2011
Structure type: polymer chemical repeating unit
Trivial name: D-galactan-III, D-galactan III
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G38255JW, GlycomeDB:
16920
- Compound ID: 12940
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G98197LI
- Compound ID: 14471
|
{{{-b-D-Galf-(1-3)-b-D-GlcpNAc-(1-5)-}}}{{{-b-D-Galf-(1-3)-a-D-Galp-(1-3)-}}}b-D-Galf-(1-3)-a-D-Galp |
Show graphically |
Structure type: oligomer
Compound class: O-antigen
Reference(s) to other database(s): GTC:G91648EZ
- Compound ID: 14472
|
Subst-(?-6)-+
|
-3)-D-Glc-ol-(6--P--5)--b-D-Galf-(1-3)-a-D-Galp-(1-2)-a-D-Rhap-(1-3)-a-D-Manp-(1-
Subst = N-(2-hydroxyethyl)-2-aminoethylphosphonic acid = SMILES O{1}P(CCNC{5}CO)(O)=O |
Show graphically |
Structure type: polymer chemical repeating unit
Compound class: CPS
- Compound ID: 4188
|
-3)-a-D-Glcp-(1-2)-b-D-Galf-(1-6)-a-D-Galp-(1-6)-b-D-Glcp-(1-3)-b-D-Galf-(1- |
Show graphically |
Structure type: polymer chemical repeating unit
Compound class: CPS, O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G17021PH, GlycomeDB:
3479
- Compound ID: 12130
|
-3)-b-D-Galf-(1-3)-a-D-Glcp-(1-2)-b-D-Galf6(50%)Ac-(1-3)-a-D-Galp-(1-2)-D-Rib-ol-(5-P- |
Show graphically |
Structure type: polymer chemical repeating unit
Compound class: CPS
Reference(s) to other database(s): GTC:G89467XD
Expand this publication
Collapse this publication
Total list of publication IDs on all result pages of the current query:
Total list of corresponding CSDB IDs (permanent record IDs):
Execution: <1 sec