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1. (Article ID: 5923)
Feasley C, van der Wel H, West CM
Evolutionary diversity of social amoebae N-glycomes may support interspecific autonomy
Glycoconjugate Journal 32(6) (2015)
345-359
Multiple species of cellular slime mold (CSM) amoebae share overlapping subterranean environments near the soil surface. Despite similar life-styles, individual species form independent starvation-induced fruiting bodies whose spores can renew the life cycle. N-glycans associated with the cell surface glycocalyx have been predicted to contribute to interspecific avoidance, resistance to pathogens, and prey preference. N-glycans from five CSM species that diverged 300-600 million years ago and whose genomes have been sequenced were fractionated into neutral and acidic pools and profiled by MALDI-TOF-MS. Glycan structure models were refined using linkage specific antibodies, exoglycosidase digestions, MALDI-MS/MS, and chromatographic studies. Amoebae of the type species Dictyostelium discoideum express modestly trimmed high mannose N-glycans variably modified with core α3-linked Fuc and peripherally decorated with 0-2 residues each of β-GlcNAc, Fuc, methylphosphate and/or sulfate, as reported previously. Comparative analyses of D. purpureum, D. fasciculatum, Polysphondylium pallidum, and Actyostelium subglobosum revealed that each displays a distinctive spectrum of high-mannose species with quantitative variations in the extent of these modifications, and qualitative differences including retention of Glc, mannose methylation, and absence of a peripheral GlcNAc, fucosylation, or sulfation. Starvation-induced development modifies the pattern in all species but, except for universally observed increased mannose-trimming, the N-glycans do not converge to a common profile. Correlations with glycogene repertoires will enable future reverse genetic studies to eliminate N-glycomic differences to test their functions in interspecific relations and pathogen evasion.
evolution, N-glycan, Dictyostelium, Cellular slime molds, Social amoebae
NCBI PubMed ID: 25987342Publication DOI: 10.1007/s10719-015-9592-8Journal NLM ID: 8603310Publisher: Kluwer Academic Publishers
Correspondence: Christopher M. West
uga.edu>; Christopher M. West ouhsc.edu>
Institutions: Department of Biochemistry & Molecular Biology, Oklahoma Center for Medical Glycobiology, University of Oklahoma Health Sciences Center, 975 NE 10th St., BRC-415, OUHSC, Oklahoma City, OK, 73104, USA
Methods: SDS-PAGE, Western blotting, MALDI-TOF MS, enzymatic digestion, permethylation, CC, MALDI-TOF/TOF MS, bioinformatic analysis (BLASTp)
The publication contains the following compound(s):
- Compound ID: 15234
|
a-D-Manp-(1-2)-a-D-Manp-(1-6)-+
|
a-D-Manp-(1-2)-a-D-Manp-(1-3)-a-D-Manp-(1-6)-+
|
a-D-Glcp-(1-2)-a-D-Glcp-(1-3)-a-D-Glcp-(1-3)-a-D-Manp-(1-2)-a-D-Manp-(1-2)-a-D-Manp-(1-3)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc |
Show graphically |
Structure type: oligomer
; 2391.8 [M+Na]+
Compound class: N-glycan
- Compound ID: 15235
|
a-D-Glcp-(1-3)-a-D-Manp-(1-2)-a-D-Manp-(1-2)-a-D-Manp-(1-3)-+
|
a-D-Manp-(1-2)-a-D-Manp-(1-6)-+ |
| |
a-D-Manp-(1-2)-a-D-Manp-(1-3)-a-D-Manp-(1-6)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc |
Show graphically |
Structure type: oligomer
; 2067.7 [M+Na]+
Compound class: N-glycan
- Compound ID: 15236
|
a-D-Manp-(1-2)-a-D-Manp-(1-2)-a-D-Manp-(1-3)-+
|
a-D-Manp-(1-2)-a-D-Manp-(1-6)-+ |
| |
a-D-Manp-(1-2)-a-D-Manp-(1-3)-a-D-Manp-(1-6)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc |
Show graphically |
Structure type: oligomer
; 1905.7 [M+Na]+
Compound class: N-glycan
- Compound ID: 15237
|
a-D-Manp-(1-2)-a-D-Manp-(1-3)-+
|
a-D-Manp-(1-2)-a-D-Manp-(1-6)-+ |
| |
a-D-Manp-(1-2)-a-D-Manp-(1-3)-a-D-Manp-(1-6)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc |
Show graphically |
Structure type: oligomer
; 1743.6 [M+Na]+
Compound class: N-glycan
- Compound ID: 15238
|
a-D-Manp-(1-2)-a-D-Manp-(1-3)-+
|
a-D-Manp-(1-2)-a-D-Manp-(1-6)-+ |
| |
a-D-Manp-(1-2)-a-D-Manp-(1-3)-a-D-Manp-(1-6)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc
|
b-D-GlcpNAc-(1-4)-+ |
Show graphically |
Structure type: oligomer
; 1946.7 [M+Na]+
Compound class: N-glycan
- Compound ID: 15240
|
a-D-Manp-(1-2)-a-D-Manp-(1-3)-+
|
a-D-Manp-(1-2)-a-D-Manp-(1-6)-+ |
| |
a-D-Manp-(1-2)-a-D-Manp-(1-3)-a-D-Manp-(1-6)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc
| |
b-D-GlcpNAc-(1-4)-+ |
|
b-D-GlcpNAc-(1-4)-+ |
Show graphically |
Structure type: oligomer
; 2149.8 [M+Na]+
Compound class: N-glycan
- Compound ID: 15241
|
a-D-Manp-(1-2)-a-D-Manp-(1-3)-+
|
a-D-Manp-(1-2)-a-D-Manp-(1-6)-+ | a-L-Fucp-(1-3)-+
| | |
a-D-Manp-(1-2)-a-D-Manp-(1-3)-a-D-Manp-(1-6)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc
| |
b-D-GlcpNAc-(1-4)-+ |
|
b-D-GlcpNAc-(1-4)-+ |
Show graphically |
Structure type: oligomer
; 2295.8 [M+Na]+
Compound class: N-glycan
- Compound ID: 15239
|
a-D-Manp-(1-2)-a-D-Manp?Me-(1-3)-+
|
a-D-Manp-(1-2)-a-D-Manp?Me-(1-6)-+ |
| |
a-D-Manp-(1-2)-a-D-Manp?Me-(1-3)-a-D-Manp-(1-6)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc
|
b-D-GlcpNAc-(1-4)-+ |
Show graphically |
Structure type: structural motif or average structure
; 1988.7 [M+Na]+
Compound class: N-glycan
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