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1. (Article ID: 656)
Gorshkova RP, Nazarenko EL, Zubkov VA, Ivanova EP, Gorshkova NM, Isakov VV
Structure of O-specific polysaccharide from Pseudoalteromonas nigrifaciens strain KMM 161
Biochemistry (Moscow) 67(6) (2002)
672-675
On mild acid degradation of the lipopolysaccharide of the marine microorganism Pseudoalteromonas nigrifaciens KMM 161 an O-specific polysaccharide containing D-galactose, 2-acetamido-2-deoxy-D-glucose, 3,6-dideoxy-3-(4-hydroxybutyramido)-D-galactose, and 2-acetamido-2-deoxy-L-guluronic acid residues was obtained. From the results of Smith degradation, O-deacetylation of the polysaccharide, and NMR spectroscopy the following structure of the tetrasaccharide repeating unit of the O-specific polysaccharide was established [figure]. It should be noted that the same structure occurs in the antigenic polysaccharide of Pseudoalteromonas nigrifaciens KMM 158 described earlier as Alteromonas macleodii 2MM6
structure, strain, polysaccharide, O-specific, O-specific polysaccharide, Alteromonas, Pseudoalteromonas, Alteromonas macleodii, Pseudoalteromonas nigrifaciens, 4-hydroxybutanoic acid
NCBI PubMed ID: 12126475Journal NLM ID: 0376536Publisher: Nauka/Interperiodica
Correspondence: elnaz

piboc.dvo.ru
Institutions: Pacific Institute of Bioorganic Chemistry, Far East Branch of the Russian Academy of Sciences, pr. 100-letiya Vladivostoka 159, Vladivostok, 690022 Russia
Methods: partial acid hydrolysis, NMR, de-O-acetylation, methanolysis
The publication contains the following compound(s):
- Compound ID: 2052
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4HOBut-(1-3)-a-D-Fucp3N-(1-4)-+
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-4)-a-L-GulpNAcA-(1-4)-b-D-GlcpNAc3Ac-(1-3)-a-D-Galp-(1- |
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Structure type: polymer chemical repeating unit
Compound class: CPS, O-polysaccharide, O-antigen
- Compound ID: 2137
Structure type: monomer
Compound class: O-polysaccharide
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2. (Article ID: 4435)
Nazarenko EL, Komandrova NA, Gorshkova RP, Tomshich SV, Zubkov VA, Kilcoyne M, Savage AV
Structures of polysaccharides and oligosaccharides of some Gram-negative marine Proteobacteria
Carbohydrate Research 338(23) (2003)
2449-2457
The chemical structures of polysaccharides and LPS core oligosaccharides, isolated from various Gram-negative marine bacteria from the genera Pseudoalteromonas and Shewanella belonging to the Alteromonadaceae family and gamma-subclass of Proteobacteria, are reviewed. The polysaccharides are distinguished by the acidic character (e.g., due to the presence of hexuronic and aldulosonic acids and their derivatives) and the occurrence of unusual sugars, including N-acyl derivatives of 6-deoxyamino sugars, such as N-acetyl-D-quinovosamine, N-acetyl-L-fucosamine and N-acetyl-6-deoxy-L-talosamine, and higher sugars like 2,6-dideoxy-2-acetamido-4-C-(3'-carboxamide-2',2'-dihydroxypropyl)-D-galac topyranose (shewanellose). Many constituent sugars have various uncommon non-sugar substituents, such as alanine, formic, lactic and hydroxybutyric acids, sulfate, phosphate, and 2-aminopropane-1,3-diol.
Lipopolysaccharide, oligosaccharide structure, O-antigen, polysaccharide structure, Shewanella, Pseudoalteromonas, Proteobacteria
NCBI PubMed ID: 14670708Publication DOI: 10.1016/j.carres.2003.06.004Journal NLM ID: 0043535Publisher: Elsevier
Correspondence: A.V. Savage
nuigalway.ie>
Institutions: Department of Chemistry, National University of Ireland, Galway, Ireland, Pacific Institute of Bioorganic Chemistry, Far East Branch of the Russian Academy of Sciences, Vladivostok 690022, Russian Federation
The publication contains the following compound(s):
- Compound ID: 181
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R-3HOBut-(1-4)-+
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-3)-a-D-QuipNAc4N-(1-3)-a-L-Rhap-(1-2)-a-L-Rhap-(1-2)-S-2HOSuc-(4-2)-a-L-FucpN-(1- |
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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide
- Compound ID: 10939
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EtN-(1--P--2)--+ P-4)-+
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b-D-Galf-(1-3)-b-D-Galp-(1-4)-b-D-Glcp-(1-4)-D-gro-a-D-manHepp-(1-5)-a-Kdop |
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Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G28862WH
- Compound ID: 2071
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D-Ala2Ac-(1-3)-+
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-4)-a-L-GalpNAcA-(1-3)-b-D-QuipNAc4NAc-(1-2)-b-D-Quip3N-(1-4)-a-D-GalpNAcA-(1-4)-a-D-Galp2(60%)Ac6(60%)Ac-(1- |
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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
- Compound ID: 9644
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b-Kdop-(2-3)-+
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-4)-a-L-6dTalpNAc-(1-3)-a-D-GlcpNAc-(1-3)-a-L-FucpNAc-(1-3)-b-D-GlcpNAc-(1- |
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Structure type: polymer chemical repeating unit
Compound class: CPS
Reference(s) to other database(s): GTC:G99783JG
- Compound ID: 2050
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G33526SB
- Compound ID: 2052
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4HOBut-(1-3)-a-D-Fucp3N-(1-4)-+
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-4)-a-L-GulpNAcA-(1-4)-b-D-GlcpNAc3Ac-(1-3)-a-D-Galp-(1- |
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Structure type: polymer chemical repeating unit
Compound class: CPS, O-polysaccharide, O-antigen
- Compound ID: 2580
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G08217OT, GlycomeDB:
25768
- Compound ID: 2581
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S-3HOBut-(1-4)-+ L-Ala-(2-6)-+
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-3)-a-D-QuipNAc4N-(1-4)-b-D-ManpNAc3NAcA-(1-4)-b-D-GlcpNAc3NAcA-(1-4)-b-D-GlcpA-(1- |
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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide
- Compound ID: 2897
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a-Colp-(1-2)-b-D-Galp-(1-3)-+
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-2)-a-Colp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpA-(1-3)-b-D-GalpNAc-(1- |
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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G10940RC, GlycomeDB:
26092
- Compound ID: 2898
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a-D-GlcpA-(1-4)-b-D-GalpNAc-(1-4)-a-D-GalpNAcA3(60%)Ac-(1-3)-+
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-4)-b-D-QuipNAc-(1-4)-a-Psep5Ac7Fo-(2- |
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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G76357XS
- Compound ID: 3295
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-4)-a-L-QuipNAc-(1-3)-a-D-GlcpNAc-(1-3)-b-D-Quip4NAc-(1-3)-a-D-Galp-(1-P- |
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Structure type: polymer chemical repeating unit
Trivial name: poly(glycosyl phosphate)
Compound class: EPS
Reference(s) to other database(s): GTC:G30365EP, GlycomeDB:
26368
- Compound ID: 3303
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GroN-(2-6)-+ GroN-(2-6)-+
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-3)-b-D-GalpA-(1-3)-b-D-GlcpNAc-(1-3)-a-D-GalpA-(1-4)-a-Neup5Ac-(2- |
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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide
- Compound ID: 3339
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-4)-a-8eLegp5Ac7Am8Ac-(2-3)-b-Shewanellosep-(1-
Shewanellose = 2-acetamido-4-C-(3'-carboxamide-2',2'-dihydroxypropyl)-2,6-dideoxy-D-galactose |
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Structure type: polymer chemical repeating unit
Trivial name: repeating unit of the phenol-soluble polysaccharide
Compound class: O-polysaccharide
- Compound ID: 10937
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D-Ala2Ac-(1-4)-+
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-3)-a-D-GalpNAc-(1-4)-a-L-GalpNAcA-(1-3)-a-D-QuipNAc4NAc-(1-3)-a-D-Quip4N-(1- |
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Structure type: polymer chemical repeating unit
Compound class: CPS
- Compound ID: 4671
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R-Lac-(2-3)-a-D-Glcp-(1-3)-+
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-4)-b-D-GlcpNAc-(1-2)-a-L-Rhap-(1-3)-b-L-Rhap-(1- |
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Structure type: polymer chemical repeating unit
Compound class: CPS, O-polysaccharide, O-antigen
- Compound ID: 4670
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G28380RI, GlycomeDB:
3493
- Compound ID: 10533
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S-3HOBut-(1-4)-a-D-QuipNAc4N-(1-4)-+
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S-3HOBut-(1-4)-+ |
| |
-4)-b-D-GlcpA-(1-3)-b-D-QuipNAc4N-(1-2)-a-L-IdopA-(1-4)-b-D-GlcpA-(1- |
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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide
- Compound ID: 3161
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S-3)-b-D-Manp-(1-4)-b-D-GlcpA-(1-3)-b-D-Galp-(1-3)-+
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a-L-Rhap-(1-2)-+ |
| |
-4)-b-D-Manp-(1-4)-b-D-Glcp-(1-4)-a-D-Galp-(1-4)-b-D-Glcp-(1- |
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Structure type: polymer chemical repeating unit
Compound class: EPS, polysaccharide
Reference(s) to other database(s): GTC:G81544DI, GlycomeDB:
26280
- Compound ID: 2051
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-2)-a-D-Glcp-(1-4)-b-D-GalpNAc-(1-3)-a-D-Galp-(1-3)-b-D-GalpNAc-(1-6)-a-D-Glcp-(1- |
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Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G61955WB, GlycomeDB:
25186
- Compound ID: 2900
Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G04744LA, GlycomeDB:
26095
- Compound ID: 10938
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P-4)-+
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a-D-ManpNAc-(1-3)-b-D-Galp-(1-4)-L-gro-a-D-manHepp-(1-5)-a-Kdop |
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Structure type: oligomer
Compound class: core oligosaccharide
Reference(s) to other database(s): GTC:G77782LX
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