CSDB: Search results

Found 1 organism. Displayed organism 1
Expand all organisms Show all as text (SweetDB notation)

1. (Organism ID: 677)

Shigella flexneri 2a

on a lifemap

(NCBI TaxID 42897, species name lookup)

Taxonomic group: bacteria
Phylum: Proteobacteria

The following compound(s) are assigned to this organism:

Compound ID: 1142

Show legend
Show as text

Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G55638UV, GlycomeDB:27209

Infection and Immunity 1999, "Treatment with succinic anhydride improves the immunogenicity of Shigella flexneri type 2a O-specific polysaccharide-protein conjugates in mice"
CSDB ID 8001 (all data & tools)
Compound ID: 1828

Show legend
Show as text

Structure type: polymer chemical repeating unit
Trivial name: biological repeating unit
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G13476UX, GlycomeDB:25371

Journal of Organic Chemistry 2004, "Blockwise approach to fragments of the O-specific polysaccharide of Shigella flexneri serotype 2a: Convergent synthesis of a decasaccharide representative of a dimer of the branched repeating unit(1)"
CSDB ID 9558 (all data & tools)

Organic and Biomolecular Chemistry 2004, "Preparation of synthetic glycoconjugates as potential vaccines against Shigella flexneri serotype 2a disease"
CSDB ID 9582 (all data & tools)

Journal of Carbohydrate Chemistry 2000, "Synthesis of ligands related to the O-specific polysaccharides of Shigella flexneri serotype 2a and Shigella flexneri serotype 5a part 5 - Linear synthesis of the methyl glycosides of tetra and pentasaccharide fragments specific for the Shigella flexneri serotype 2a O-antigen"
CSDB ID 1253 (all data & tools)

Journal of Carbohydrate Chemistry 2000, "Synthesis of the methyl glycosides of a di- and two trisaccharide fragments specific for the Shigella flexneri serotype 2a O-antigen"
CSDB ID 3877 (all data & tools)

Biochemistry (Moscow) 1994, "The structure of lipopolysaccharides of gram-negative bacteria. III. The structure of O-antigens: A review"
CSDB ID 108644 (all data & tools)

Journal of Immunology 2006, "Characterization of Functional Oligosaccharide Mimics of the Shigella flexneri Serotype 2a O-Antigen: Implications for the Development of a Chemically Defined Glycoconjugate Vaccine"
CSDB ID 20186 (all data & tools)

Gene 1997, "Shigella flexneri type-specific antigen V: cloning, sequencing and characterization of the glucosyl transferase gene of temperate bacteriophage SfV"
CSDB ID 23908 (all data & tools)

Journal of Organic Chemistry 2009, "Efficient synthesis of six tri- to hexasaccharide fragments of Shigella flexneri serotypes 3a and/or X O-antigen, including a study on acceptors containing N-trichloroacetylglucosamine versus N-acetylglucosamine"
CSDB ID 23966 (all data & tools)

Journal of Immunology 2009, "A synthetic carbohydrate-protein conjugate vaccine candidate against Shigella flexneri 2a infection"
CSDB ID 23815 (all data & tools)

Journal of Molecular Biology 2009, "Structural mimicry of O-antigen by a peptide revealed in a complex with an antibody raised against Shigella flexneri serotype 2a"
CSDB ID 23858 (all data & tools)

Glycobiology 2011, "Effects of backbone substitutions on the conformational behaviour of Shigella flexneri O-antigens: implications for vaccine strategy"
CSDB ID 26497 (all data & tools)

Glycobiology 2011, "Dynamic aspects of antibody:oligosaccharide complexes characterized by molecular dynamics simulations and STD-NMR"
CSDB ID 26364 (all data & tools)

Biochemistry 2012, "Structural Analysis of a Protective Epitope of the Francisella tularensis O-Polysaccharide"
CSDB ID 28613 (all data & tools)

Chemistry 2005, "Synthesis of two linear PADRE conjugates bearing a deca- or pentadecasaccharide B epitope as potential synthetic vaccines against Shigella flexneri serotype 2a infection"
CSDB ID 30004 (all data & tools)

Microbes and Infection / Institut Pasteur 2008, "Vaccination against shigellosis: is it the path that is difficult or is it the difficult that is the path?"
CSDB ID 30025 (all data & tools)

Journal of Bacteriology 2014, "Diversity of O-antigen repeat unit structures can account for the substantial sequence variation of Wzx translocases"
CSDB ID 30271 (all data & tools)

Journal of Computational Chemistry 2016, "CarbBuilder: Software for building molecular models of complex oligo- and polysaccharide structures"
CSDB ID 11756 (all data & tools)

Chemistry: a European Journal 2018, "Synthetic Glycans and Glycomimetics: A Promising Alternative to Natural Polysaccharides"
CSDB ID 12856 (all data & tools)

Drug Discovery Today: Technologies 2020, "Bacterial polysaccharides: conformation, dynamics and molecular recognition by antibodies"
CSDB ID 3676 (all data & tools)

NPJ vaccines 2022, "Rapid generation of Shigella flexneri GMMA displaying natural or new and cross-reactive O-Antigens"
CSDB ID 20964 (all data & tools)

Compound ID: 1829

Compound 1829

Show legend
Show as text

Compound ID: 1843

Show legend
Show as text

Structure type: oligomer
Aglycon: spacer-polypeptide T-epitope or 2-aminoethyl
Trivial name: synthetic glycoconjugate 1
Reference(s) to other database(s): GTC:G84580OW, GlycomeDB:25426

Organic and Biomolecular Chemistry 2004, "Preparation of synthetic glycoconjugates as potential vaccines against Shigella flexneri serotype 2a disease"
CSDB ID 9619 (all data & tools)
Compound ID: 1844

Show legend
Show as text

Structure type: oligomer
Aglycon: spacer-polypeptide T-epitope or 2-aminoethyl
Trivial name: synthetic glycoconjugate 2
Reference(s) to other database(s): GTC:G73227JE, GlycomeDB:27601

Organic and Biomolecular Chemistry 2004, "Preparation of synthetic glycoconjugates as potential vaccines against Shigella flexneri serotype 2a disease"
CSDB ID 9620 (all data & tools)

Compound ID: 1845

Compound 1845

Show legend
Show as text

Compound ID: 2307

Show legend
Show as text

Structure type: oligomer
Trivial name: fragment of O-antigen
Reference(s) to other database(s): GlycomeDB:15361

Journal of Carbohydrate Chemistry 2000, "Synthesis of ligands related to the O-specific polysaccharides of Shigella flexneri serotype 2a and Shigella flexneri serotype 5a part 5 - Linear synthesis of the methyl glycosides of tetra and pentasaccharide fragments specific for the Shigella flexneri serotype 2a O-antigen"
CSDB ID 1354 (all data & tools)

Journal of Carbohydrate Chemistry 2000, "Synthesis of the methyl glycosides of a di- and two trisaccharide fragments specific for the Shigella flexneri serotype 2a O-antigen"
CSDB ID 3716 (all data & tools)
Compound ID: 2308

Show legend
Show as text

Structure type: oligomer
Reference(s) to other database(s): GlycomeDB:25425

Journal of Carbohydrate Chemistry 2000, "Synthesis of ligands related to the O-specific polysaccharides of Shigella flexneri serotype 2a and Shigella flexneri serotype 5a part 5 - Linear synthesis of the methyl glycosides of tetra and pentasaccharide fragments specific for the Shigella flexneri serotype 2a O-antigen"
CSDB ID 1355 (all data & tools)

Journal of Carbohydrate Chemistry 2000, "Synthesis of the methyl glycosides of a di- and two trisaccharide fragments specific for the Shigella flexneri serotype 2a O-antigen"
CSDB ID 3875 (all data & tools)
Compound ID: 2309

Show legend
Show as text

Structure type: oligomer
Reference(s) to other database(s): GlycomeDB:25426

Journal of Carbohydrate Chemistry 2000, "Synthesis of ligands related to the O-specific polysaccharides of Shigella flexneri serotype 2a and Shigella flexneri serotype 5a part 5 - Linear synthesis of the methyl glycosides of tetra and pentasaccharide fragments specific for the Shigella flexneri serotype 2a O-antigen"
CSDB ID 1356 (all data & tools)

Journal of Carbohydrate Chemistry 2000, "Synthesis of the methyl glycosides of a di- and two trisaccharide fragments specific for the Shigella flexneri serotype 2a O-antigen"
CSDB ID 3876 (all data & tools)

Journal of Immunology 2006, "Characterization of Functional Oligosaccharide Mimics of the Shigella flexneri Serotype 2a O-Antigen: Implications for the Development of a Chemically Defined Glycoconjugate Vaccine"
CSDB ID 20515 (all data & tools)
Compound ID: 2310

Show legend
Show as text

Structure type: oligomer
Reference(s) to other database(s): GlycomeDB:25427

Journal of Carbohydrate Chemistry 2000, "Synthesis of ligands related to the O-specific polysaccharides of Shigella flexneri serotype 2a and Shigella flexneri serotype 5a part 5 - Linear synthesis of the methyl glycosides of tetra and pentasaccharide fragments specific for the Shigella flexneri serotype 2a O-antigen"
CSDB ID 1357 (all data & tools)

Journal of Immunology 2006, "Characterization of Functional Oligosaccharide Mimics of the Shigella flexneri Serotype 2a O-Antigen: Implications for the Development of a Chemically Defined Glycoconjugate Vaccine"
CSDB ID 20520 (all data & tools)

Compound ID: 2311

Compound 2311

Show legend
Show as text

Compound ID: 2986

Show legend
Show as text

Structure type: oligomer
Reference(s) to other database(s): GlycomeDB:277

Journal of Carbohydrate Chemistry 2000, "Synthesis of the methyl glycosides of a di- and two trisaccharide fragments specific for the Shigella flexneri serotype 2a O-antigen"
CSDB ID 3874 (all data & tools)
Compound ID: 791

Show legend
Show as text

Structure type: polymer chemical repeating unit
Compound class: O-polysaccharide, O-antigen, Shigella serogroup Y antigen, rhamnoglucan
Reference(s) to other database(s): GTC:G98477AV, GlycomeDB:3543, CCSD:2501, CBank-STR:8288, GenDB:AFl28887

Infection and Immunity 1993, "Synthesis, characterization, and clinical evaluation of conjugate vaccines composed of the O-specific polysaccharides of Shigella dysenteriae type 1, Shigella flexneri type 2a, and Shigella sonnei (Plesiomonas shigelloides) bound to bacterial toxoids"
CSDB ID 130503 (all data & tools)

Marine Drugs 2013, "Structural and immunochemical studies of the lipopolysaccharide from the fish pathogen, Aeromonas bestiarum strain K296, serotype O18"
CSDB ID 29776 (all data & tools)

Carbohydrate Research 2015, "Structure of the O-specific polysaccharide from the lipopolysaccharide of Aeromonas sobria strain Pt312"
CSDB ID 11203 (all data & tools)
Compound ID: 6957

Show legend
Show as text

Structure type: oligomer
Reference(s) to other database(s): GlycomeDB:28035

Journal of Immunology 2006, "Characterization of Functional Oligosaccharide Mimics of the Shigella flexneri Serotype 2a O-Antigen: Implications for the Development of a Chemically Defined Glycoconjugate Vaccine"
CSDB ID 20516 (all data & tools)
Compound ID: 6958

Show legend
Show as text

Structure type: oligomer
Reference(s) to other database(s): GlycomeDB:28036

Journal of Immunology 2006, "Characterization of Functional Oligosaccharide Mimics of the Shigella flexneri Serotype 2a O-Antigen: Implications for the Development of a Chemically Defined Glycoconjugate Vaccine"
CSDB ID 20517 (all data & tools)
Compound ID: 6959

Show legend
Show as text

Structure type: oligomer
Reference(s) to other database(s): GlycomeDB:27601

Journal of Immunology 2006, "Characterization of Functional Oligosaccharide Mimics of the Shigella flexneri Serotype 2a O-Antigen: Implications for the Development of a Chemically Defined Glycoconjugate Vaccine"
CSDB ID 20518 (all data & tools)

Compound ID: 6960

Compound 6960

Show legend
Show as text

Compound ID: 6961

Compound 6961

Show legend
Show as text

Compound ID: 6962

Compound 6962

Show legend
Show as text

Compound ID: 7551

Compound 7551

Show legend
Show as text

Compound ID: 8209

Show legend
Show as text

Structure type: polymer biological repeating unit
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G13476UX, GlycomeDB:25371

Current Topics in Medicinal Chemistry 2008, "Recent developments in synthetic oligosaccharide-based bacterial vaccines"
CSDB ID 23492 (all data & tools)

Molecular Immunology 2020, "Specificity of human natural antibodies referred to as anti-Tn"
CSDB ID 3994 (all data & tools)

Compound ID: 8648

Compound 8648

Show legend
Show as text

Compound ID: 8678

Show legend
Show as text

Structure type: polymer chemical repeating unit
Aglycon: different spacer
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G13476UX, GlycomeDB:25371

Vaccine 2009, "Rational design and immunogenicity of liposome-based diepitope constructs: application to synthetic oligosaccharides mimicking the Shigella flexneri 2a O-antigen"
CSDB ID 23831 (all data & tools)

Compound ID: 9044

Compound 9044

Show legend
Show as text

Compound ID: 9045

Compound 9045

Show legend
Show as text

Compound ID: 9046

Compound 9046

Show legend
Show as text

Compound ID: 9047

Compound 9047

Show legend
Show as text

Compound ID: 9048

Compound 9048

Show legend
Show as text

Compound ID: 9051

Compound 9051

Show legend
Show as text

Compound ID: 10460

Compound 10460

Show legend
Show as text

Compound ID: 11510

Compound 11510

Show legend
Show as text

Compound ID: 11511

Compound 11511

Show legend
Show as text

Compound ID: 11580

Compound 11580

Show legend
Show as text

Compound ID: 11581

Compound 11581

Show legend
Show as text

Compound ID: 11582

Compound 11582

Show legend
Show as text

Compound ID: 11583

Compound 11583

Show legend
Show as text

Compound ID: 11584

Compound 11584

Show legend
Show as text

Compound ID: 11849

Compound 11849

Show legend
Show as text

Compound ID: 11850

Show legend
Show as text

Structure type: oligomer

Chembiochem: a European Journal of Chemical Biology 2014, "CGTase-catalysed cis-glucosylation of L-rhamnosides for the preparation of Shigella flexneri 2a and 3a haptens"
CSDB ID 30521 (all data & tools)
Compound ID: 12009

Show legend
Show as text

Structure type: polymer chemical repeating unit ; 2493.9602 [M+Na]+, n=3
C98H166N4O67
Aglycon: 2-aminoethyl
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G13476UX

Chemical Communications 2015, "Programmed chemo-enzymatic synthesis of the oligosaccharide component of a carbohydrate-based antibacterial vaccine candidate"
CSDB ID 30856 (all data & tools)
Compound ID: 12226

Show legend
Show as text

Structure type: polymer chemical repeating unit ; n=2
Aglycon: aminoethyl
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G13476UX

Journal of Organic Chemistry 2015, "Investigation on the Synthesis of Shigella flexneri Specific Oligosaccharides Using Disaccharides as Potential Transglucosylase Acceptor Substrates"
CSDB ID 11067 (all data & tools)
Compound ID: 12320

Show legend
Show as text

Structure type: oligomer
Compound class: O-polysaccharide
Reference(s) to other database(s): GTC:G44940IL

Mendeleev Communications 2016, "Solvolysis with trifluoroacetic acid: an efficient method for selective cleavage of polysaccharides"
CSDB ID 11616 (all data & tools)

Compound ID: 12321

Compound 12321

Show legend
Show as text

Compound ID: 12450

Compound 12450

Show legend
Show as text

Compound ID: 13058

Show legend
Show as text

Structure type: fragment of a bigger structure ; n=4
Aglycon: (CH2)2NH2
Compound class: O-polysaccharide, O-antigen
Reference(s) to other database(s): GTC:G13476UX

Viruses 2018, "Bacteriophage Sf6 Tailspike Protein for Detection of Shigella flexneri Pathogens"
CSDB ID 12647 (all data & tools)

Compound ID: 13059

Compound 13059

Show legend
Show as text

Compound ID: 14560

Show legend
Show as text

Structure type: polymer biological repeating unit
Compound class: O-antigen
Reference(s) to other database(s): GTC:G05220TH

Journal of Physical Chemistry B 2020, "Effects of Glucosylation and O-Acetylation on the Conformation of Shigella flexneri Serogroup 2 O-Antigen Vaccine Targets"
CSDB ID 3697 (all data & tools)

Compound ID: 14561

Compound 14561

Show legend
Show as text

Expand this organism

Execution: 1 sec