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1. (Article ID: 7324)
Matei E, Louis JM, Jee J, Gronenborn AM
NMR solution structure of a cyanovirin homolog from wheat head blight fungus
Proteins 79(5) (2011)
1538-1549
Members of the cyanovirin-N homolog (CVNH) lectin family are found in bacteria, fungi and plants. As part of our ongoing work on CVNH structure-function studies, we determined the high-resolution NMR solution structure of the homolog from the wheat head blight disease causing ascomycetous fungus Gibberella zeae (or Fusarium graminearum), hereafter called GzCVNH. Like cyanovirin-N (CV-N), GzCVNH comprises two tandem sequence repeats and the protein sequence exhibits 30% identity with CV-N. The overall structure is similar to those of other members of the CVNH family, with the conserved pseudo-symmetric halves of the structure, domains A and B, closely resembling recently determined structures of Tuber borchii, Neurospora crassa, and Ceratopteris richardii CVNH proteins. Although GzCVNH exhibits a similar glycan recognition profile to CV-N and specifically binds to Manα(1-2)Manα, its weak carbohydrate binding affinity to only one binding site is insufficient for conferring anti-HIV activity.
lectin, NMR solution structure, CVNH, antiviral protein, HIV
NCBI PubMed ID: 21365681Publication DOI: 10.1002/prot.22981Journal NLM ID: 8700181Publisher: New York, NY: Wiley-Liss
Correspondence: Gronenborn AM
pitt.edu>
Institutions: Department of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, USA, Laboratory of Chemical Physics, National Institute of Diabetes, Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland, USA
Methods: 13C NMR, 1H NMR, biological assays, GPC, TOCSY, NOESY, HSQC, fluorophore labeling
The publication contains the following compound(s):
- Compound ID: 18674
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a-D-Manp-(1-2)-a-D-Manp-(1-2)-a-D-Manp-(1-3)-+
|
a-D-Manp-(1-2)-a-D-Manp-(1-6)-+ |
| |
a-D-Manp-(1-2)-a-D-Manp-(1-3)-a-D-Manp-(1-6)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1--/(->4) Asn (protein)/ |
Show graphically |
Structure type: oligomer
Aglycon: (->4) Asn (protein)
Compound class: N-glycan
Reference(s) to other database(s): GTC:G60230HH
- Compound ID: 18675
|
a-D-Manp-(1-2)-a-D-Manp-(1-2)-a-D-Manp-(1-3)-+
|
a-D-Manp-(1-3)-+ |
| |
a-D-Manp-(1-2)-a-D-Manp-(1-6)-a-D-Manp-(1-6)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1--/(->4) Asn (protein)/ |
Show graphically |
Structure type: oligomer
Aglycon: (->4) Asn (protein)
Compound class: N-glycan
Reference(s) to other database(s): GTC:G40702WU
- Compound ID: 18677
|
a-D-Manp-(1-2)-a-D-Manp-(1-3)-+
|
a-D-Manp-(1-6)-+ |
| |
a-D-Manp-(1-2)-a-D-Manp-(1-3)-a-D-Manp-(1-6)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1--/(->4) Asn (protein)/ |
Show graphically |
Structure type: oligomer
Aglycon: (->4) Asn (protein)
Compound class: N-glycan
Reference(s) to other database(s): GTC:G63337SS
- Compound ID: 18678
Structure type: oligomer
Compound class: N-glycan
Reference(s) to other database(s): GTC:G39767HX
- Compound ID: 18679
|
a-D-Manp-(1-2)-a-D-Manp-(1-6)-+
|
a-D-Manp-(1-2)-a-D-Manp-(1-3)-b-D-Manp-(1--/(->4) Asn (protein)/ |
Show graphically |
Structure type: oligomer
Aglycon: (->4) Asn (protein)
Compound class: N-glycan
Reference(s) to other database(s): GTC:G96586KV
- Compound ID: 18680
|
a-D-Manp-(1-3)-+
|
a-D-Manp-(1-2)-a-D-Manp-(1-2)-a-D-Manp-(1-6)-b-D-Manp |
Show graphically |
Structure type: oligomer
Compound class: N-glycan
Reference(s) to other database(s): GTC:G18571KJ
- Compound ID: 18681
|
a-D-Manp-(1-3)-+
|
a-D-Manp-(1-6)-+ |
| |
a-D-Manp-(1-3)-a-D-Manp-(1-6)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1--/(->4) Asn (protein)/ |
Show graphically |
Structure type: oligomer
Aglycon: (->4) Asn (protein)
Compound class: N-glycan
Reference(s) to other database(s): GTC:G55220VL
- Compound ID: 18682
|
a-D-Manp-(1-2)-a-D-Manp-(1-3)-+
|
a-D-Manp-(1-6)-+ |
| |
a-D-Manp-(1-3)-a-D-Manp-(1-6)-b-D-Manp-(1-4)-b-D-GlcpNAc-(1-4)-b-D-GlcpNAc-(1--/(->4) Asn (protein)/ |
Show graphically |
Structure type: oligomer
Aglycon: (->4) Asn (protein)
Compound class: N-glycan
Reference(s) to other database(s): GTC:G80966KZ
- Compound ID: 18683
|
a-D-Manp-(1-2)-a-D-Manp-(1-2)-a-D-Manp-(1-3)-+
|
a-D-Manp-(1-2)-a-D-Manp-(1-6)-+ |
| |
a-D-Manp-(1-2)-a-D-Manp-(1-3)-a-D-Manp-(1-6)-b-D-Manp |
Show graphically |
Structure type: oligomer
Compound class: N-glycan
Reference(s) to other database(s): GTC:G27127BL
- Compound ID: 18684
|
a-D-Manp-(1-2)-a-D-Manp-(1-2)-a-D-Manp-(1-3)-+
|
a-D-Manp-(1-3)-+ |
| |
a-D-Manp-(1-2)-a-D-Manp-(1-6)-a-D-Manp-(1-6)-b-D-Manp |
Show graphically |
Structure type: oligomer
Compound class: N-glycan
Reference(s) to other database(s): GTC:G53125SB
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