Taxonomic group: bacteria / Firmicutes
(Phylum: Firmicutes)
The structure was elucidated in this paperNCBI PubMed ID: 36235941Publication DOI: 10.3390/polym14193986Journal NLM ID: 101545357Publisher: Basel: MDPI
Correspondence: G. Jayaraman <gjayaraman

vit.ac.in>
Institutions: School of Biosciences and Technology, Vellore Institute of Technology, Vellore 632014, Tamil Nadu, India
The use of natural polysaccharides as biomaterials is gaining importance in tissue engineering due to their inherent biocompatibility. In this direction, the present study aims to explore the structure and biocompatibility of the EPS produced by Virgibacillus dokdonensis VITP14. This marine bacterium produces 17.3 g/L of EPS at 96 h of fermentation. The EPS was purified using ion exchange and gel permeation chromatographic methods. The porous web-like structure and elemental composition (C, O, Na, Mg, P, S) of the EPS were inferred from SEM and EDX analysis. AFM analysis revealed spike-like lumps with a surface roughness of 84.85 nm. The zeta potential value of -10 mV indicates the anionic nature of the EPS. Initial molecular characterization showed that the EPS is a heteropolysaccharide composed of glucose (25.8%), ribose (18.6%), fructose (31.5%), and xylose (24%), which are the monosaccharide units in the HPLC analysis. The FTIR spectrum indicates the presence of functional groups/bonds typical of EPSs (O-H, C-H, C-O-H, C-O, S=O, and P=O). The polymer has an average molecular weight of 555 kDa. Further, NMR analysis revealed the monomer composition, the existence of two α- and six β-glycosidic linkages, and the branched repeating unit as →1)[α-D-Xylp-(1→2)-α-D-Glcp-(1→6)-β-D-Glcp-(1→5)]-β-D-Frup-(2→2)[β-D-Xylp-(1→4)]-β-D-Xylp-(1→6)-β-D-Fruf-(2→4)-β-D-Ribp-(1→. The EPS is thermally stable till 251.4 °C. X-ray diffraction analysis confirmed the semicrystalline (54.2%) nature of the EPS. Further, the EPS exhibits significant water solubility (76.5%), water-holding capacity (266.8%), emulsifying index (66.8%), hemocompatibility (erythrocyte protection > 87%), and cytocompatibility (cell viability > 80% on RAW264.7 and keratinocyte HaCaT cells) at higher concentrations and prolongs coagulation time in APTT and PT tests. Our research unveils the significant biocompatibility of VITP14 EPS for synthesizing a variety of biomaterials.
exopolysaccharides, fermentation, Marine bacteria, anticoagulant activity, Structural characterization, halophiles, biomaterial, cytocompatibility, hemocompatibility
Structure type: polymer chemical repeating unit
Location inside paper: abstract, Fig. 5g, table 3
Compound class: EPS
Contained glycoepitopes: IEDB_114701,IEDB_142488,IEDB_144998,IEDB_146664,IEDB_164059,IEDB_167188,IEDB_174332,IEDB_581504,IEDB_983931,SB_192
Methods: 13C NMR, 1H NMR, NMR-2D, X-ray, FTIR, HPLC, GPC, statistical analysis, zeta potential measurement, cell viability assay, SEM, AFM, emulsifying activity determination, TGA, WHC, X-ray EDX, hemolytic activity, hemolysis activity, anticoagulant activity
Comments, role: NMR temperature was not specified; the published NMR assignment has many erroneous (impossible) chemical shifts; the spectra of residues except Fru were removed.
NCBI Taxonomy refs (TaxIDs): 302167
Show glycosyltransferases
NMR conditions: in D2O
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
4,6,2,5,6,2 aDXylp
4,6,2,5,6 aDGlcp
4,6,2,5 bDGlcp
4,6,2 bDFrup 61.02 98.04 68.52 69.20 75.15 61.50
4,6,4 bDXylp
4,6 bDXylp
4 bDFruf 62.40 101.61 70.59 69.45 81.03 63.05
bDRibp
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
4,6,2,5,6,2 aDXylp
4,6,2,5,6 aDGlcp
4,6,2,5 bDGlcp
4,6,2 bDFrup 3.48-3.61 - 3.79 3.85 3.88 3.51-3.58
4,6,4 bDXylp
4,6 bDXylp
4 bDFruf 3.59-3.71 - 3.97 3.86 3.76 3.64-3.77
bDRibp
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
4,6,2,5,6,2 aDXylp
4,6,2,5,6 aDGlcp
4,6,2,5 bDGlcp
4,6,2 bDFrup 61.02/3.48-3.61 68.52/3.79 69.20/3.85 75.15/3.88 61.50/3.51-3.58
4,6,4 bDXylp
4,6 bDXylp
4 bDFruf 62.40/3.59-3.71 70.59/3.97 69.45/3.86 81.03/3.76 63.05/3.64-3.77
bDRibp
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
4,6,2,5,6,2 | aDXylp | |
4,6,2,5,6 | aDGlcp | |
4,6,2,5 | bDGlcp | |
4,6,2 | bDFrup | 3.48 3.61 |
| 3.79 | 3.85 | 3.88 | 3.51 3.58 |
4,6,4 | bDXylp | |
4,6 | bDXylp | |
4 | bDFruf | 3.59 3.71 |
| 3.97 | 3.86 | 3.76 | 3.64 3.77 |
| bDRibp | |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
4,6,2,5,6,2 | aDXylp | |
4,6,2,5,6 | aDGlcp | |
4,6,2,5 | bDGlcp | |
4,6,2 | bDFrup | 61.02 | 98.04 | 68.52 | 69.20 | 75.15 | 61.50 |
4,6,4 | bDXylp | |
4,6 | bDXylp | |
4 | bDFruf | 62.40 | 101.61 | 70.59 | 69.45 | 81.03 | 63.05 |
| bDRibp | |
|
There is only one chemically distinct structure: