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Casillo A, Di Guida R, Cavasso D, Stellavato A, Rai D, Yokoyama F, Kamasaka K, Kurihara T, Schiraldi C, Kulkarni S, Paduano L, Corsaro MM
Polysaccharide corona: The acetyl-rich envelope wraps the extracellular membrane vesicles and the cells of Shewanella vesiculosa providing adhesiveness
Carbohydrate Polymers 297 (2022)
120036
a-D-Sugp2Ac3Ac4Ac
Sug = 2,3,4-triamino-2,3,4,6-tetradeoxy-D-galactopyranose = SMILES O{1}C1{2}[C@H](N){3}[C@@H](N){4}[C@@H](N)[C@@H](C)O1 |
Show graphically |
Shewanella vesiculosa HM13
(Ancestor NCBI TaxID 518738,
species name lookup)
Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
The structure was elucidated in this paperNCBI PubMed ID: 36184145Publication DOI: 10.1016/j.carbpol.2022.120036Journal NLM ID: 8307156Publisher: Elsevier
Correspondence: M.M. Corsaro <corsaro

unina.it>
Institutions: Department of Chemical Sciences, University of Naples 'Federico II', Complesso Universitario Monte S. Angelo, Via Cintia 4, 80126 Naples, Italy, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan, Department of Experimental Medicine, Section of Biotechnology Medical Histology and Molecular Biology, University of Campania 'Luigi Vanvitelli', Via L. De Crecchio n 7, 80138 Naples, Italy, Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India
Bacterial extracellular membrane vesicles (EMVs) play an active role in many physiological and pathogenic processes. Here, we report the identification and the detailed structural characterization of the capsular polysaccharide from both cells and EMVs from Shewanella vesiculosa by NMR and chemical analysis. The polysaccharide consists of a pentasaccharide repeating unit containing neutral monosaccharides together with amino sugars, of which one has never been isolated from a natural source. The adhesion ability of the polymer both on synthetic surfaces, such as polystyrene nanoparticles and on vesicles with a bilayer mimicking the bacterial membrane in the presence and absence of lipopolysaccharide was investigated. In both cases, a 'CPS-corona' that could be the first stage of biofilm formation was observed. The polymer also activates Caspases on colon cancer cells, making S. vesiculosa EMVs as natural nanocarriers for drug delivery.
NMR, capsule, Biofilm, nanoparticles, SANS, Shewanosamine
Structure type: monomer
Location inside paper: scheme 1, scheme 3, table 2, compound 11
Compound class: CPS
Methods: 1H NMR, NMR-2D, GC-MS, chemical analysis, ESI-MS, chemical synthesis, extraction, zeta potential measurement, RP-HPLC, biological assay, DLS, SANS, SLS, DOG-PAGE
Synthetic data: chemical
Comments, role: 2,3,4-triacetamido-2,3,4,6-tetradeoxy-D-galactopyranose, named Shewanosamine (ShwN)
Related record ID(s): 20861, 20862
NCBI Taxonomy refs (TaxIDs): 518738
Show glycosyltransferases
NMR conditions: in D2O; pH 6 at 308 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
2 Ac 174.6 22.0
3 Ac 174.4 21.8
4 Ac 175.4 21.8
aDSugp 90.4 47.6 47.6 51.3 64.8 15.7
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
2 Ac - 1.91
3 Ac - 1.83
4 Ac - 2.02
aDSugp 5.14 3.99 4.25 4.18 4.37 1.03
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
2 Ac 22.0/1.91
3 Ac 21.8/1.83
4 Ac 21.8/2.02
aDSugp 90.4/5.14 47.6/3.99 47.6/4.25 51.3/4.18 64.8/4.37 15.7/1.03
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
2 | Ac |
| 1.91 | |
3 | Ac |
| 1.83 | |
4 | Ac |
| 2.02 | |
| aDSugp | 5.14 | 3.99 | 4.25 | 4.18 | 4.37 | 1.03 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
2 | Ac | 174.6 | 22.0 | |
3 | Ac | 174.4 | 21.8 | |
4 | Ac | 175.4 | 21.8 | |
| aDSugp | 90.4 | 47.6 | 47.6 | 51.3 | 64.8 | 15.7 |
|
There is only one chemically distinct structure:
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Casillo A, Di Guida R, Cavasso D, Stellavato A, Rai D, Yokoyama F, Kamasaka K, Kurihara T, Schiraldi C, Kulkarni S, Paduano L, Corsaro MM
Polysaccharide corona: The acetyl-rich envelope wraps the extracellular membrane vesicles and the cells of Shewanella vesiculosa providing adhesiveness
Carbohydrate Polymers 297 (2022)
120036
b-D-Sugp2Ac3Ac4Ac
Sug = 2,3,4-triamino-2,3,4,6-tetradeoxy-D-galactopyranose = SMILES O{1}C1{2}[C@H](N){3}[C@@H](N){4}[C@@H](N)[C@@H](C)O1 |
Show graphically |
Shewanella vesiculosa HM13
(Ancestor NCBI TaxID 518738,
species name lookup)
Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
The structure was elucidated in this paperNCBI PubMed ID: 36184145Publication DOI: 10.1016/j.carbpol.2022.120036Journal NLM ID: 8307156Publisher: Elsevier
Correspondence: M.M. Corsaro <corsaro

unina.it>
Institutions: Department of Chemical Sciences, University of Naples 'Federico II', Complesso Universitario Monte S. Angelo, Via Cintia 4, 80126 Naples, Italy, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan, Department of Experimental Medicine, Section of Biotechnology Medical Histology and Molecular Biology, University of Campania 'Luigi Vanvitelli', Via L. De Crecchio n 7, 80138 Naples, Italy, Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India
Bacterial extracellular membrane vesicles (EMVs) play an active role in many physiological and pathogenic processes. Here, we report the identification and the detailed structural characterization of the capsular polysaccharide from both cells and EMVs from Shewanella vesiculosa by NMR and chemical analysis. The polysaccharide consists of a pentasaccharide repeating unit containing neutral monosaccharides together with amino sugars, of which one has never been isolated from a natural source. The adhesion ability of the polymer both on synthetic surfaces, such as polystyrene nanoparticles and on vesicles with a bilayer mimicking the bacterial membrane in the presence and absence of lipopolysaccharide was investigated. In both cases, a 'CPS-corona' that could be the first stage of biofilm formation was observed. The polymer also activates Caspases on colon cancer cells, making S. vesiculosa EMVs as natural nanocarriers for drug delivery.
NMR, capsule, Biofilm, nanoparticles, SANS, Shewanosamine
Structure type: monomer
Location inside paper: scheme 1, scheme 3, table 2, compound 11
Trivial name: 2,3,4-triacetamido-2,3,4,6-tetradeoxy-D-galactopyranose
Compound class: CPS
Methods: 1H NMR, NMR-2D, GC-MS, chemical analysis, ESI-MS, chemical synthesis, extraction, zeta potential measurement, RP-HPLC, biological assay, DLS, SANS, SLS, DOG-PAGE
Synthetic data: chemical
Comments, role: 2,3,4-triacetamido-2,3,4,6-tetradeoxy-D-galactopyranose, named Shewanosamine (ShwN)
Related record ID(s): 8438, 20862
NCBI Taxonomy refs (TaxIDs): 518738
Show glycosyltransferases
NMR conditions: in D2O; pH 6 at 308 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
2 Ac 174.8 22.0
3 Ac 174.3 21.8
4 Ac 175.3 22.0
bDSugp 96.0 51.0 51.8 51.1 70.8 15.7
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
2 Ac - 1.91
3 Ac - 1.83
4 Ac - 2.03
bDSugp 4.67 3.70 4.07 4.13 3.93 1.08
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
2 Ac 22.0/1.91
3 Ac 21.8/1.83
4 Ac 22.0/2.03
bDSugp 96.0/4.67 51.0/3.70 51.8/4.07 51.1/4.13 70.8/3.93 15.7/1.08
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
2 | Ac |
| 1.91 | |
3 | Ac |
| 1.83 | |
4 | Ac |
| 2.03 | |
| bDSugp | 4.67 | 3.70 | 4.07 | 4.13 | 3.93 | 1.08 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
2 | Ac | 174.8 | 22.0 | |
3 | Ac | 174.3 | 21.8 | |
4 | Ac | 175.3 | 22.0 | |
| bDSugp | 96.0 | 51.0 | 51.8 | 51.1 | 70.8 | 15.7 |
|
There is only one chemically distinct structure:
Expand this record
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Casillo A, Di Guida R, Cavasso D, Stellavato A, Rai D, Yokoyama F, Kamasaka K, Kurihara T, Schiraldi C, Kulkarni S, Paduano L, Corsaro MM
Polysaccharide corona: The acetyl-rich envelope wraps the extracellular membrane vesicles and the cells of Shewanella vesiculosa providing adhesiveness
Carbohydrate Polymers 297 (2022)
120036
a-D-Sugp2Ac3Am4Ac-(1-4)-a-D-GlcpNAc3NAcA-(1-4)-+
|
-4)-b-D-GlcpNAc-(1-6)-a-D-Glcp-(1-3)-b-L-Rhap2Ac-(1-
Sug = 2,3,4-triamino-2,3,4,6-tetradeoxy-D-galactopyranose = SMILES O{1}C1{2}[C@H](N){3}[C@@H](N){4}[C@@H](N)[C@@H](C)O1 |
Show graphically |
Shewanella vesiculosa HM13
(Ancestor NCBI TaxID 518738,
species name lookup)
Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
The structure was elucidated in this paperNCBI PubMed ID: 36184145Publication DOI: 10.1016/j.carbpol.2022.120036Journal NLM ID: 8307156Publisher: Elsevier
Correspondence: M.M. Corsaro <corsaro

unina.it>
Institutions: Department of Chemical Sciences, University of Naples 'Federico II', Complesso Universitario Monte S. Angelo, Via Cintia 4, 80126 Naples, Italy, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan, Department of Experimental Medicine, Section of Biotechnology Medical Histology and Molecular Biology, University of Campania 'Luigi Vanvitelli', Via L. De Crecchio n 7, 80138 Naples, Italy, Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India
Bacterial extracellular membrane vesicles (EMVs) play an active role in many physiological and pathogenic processes. Here, we report the identification and the detailed structural characterization of the capsular polysaccharide from both cells and EMVs from Shewanella vesiculosa by NMR and chemical analysis. The polysaccharide consists of a pentasaccharide repeating unit containing neutral monosaccharides together with amino sugars, of which one has never been isolated from a natural source. The adhesion ability of the polymer both on synthetic surfaces, such as polystyrene nanoparticles and on vesicles with a bilayer mimicking the bacterial membrane in the presence and absence of lipopolysaccharide was investigated. In both cases, a 'CPS-corona' that could be the first stage of biofilm formation was observed. The polymer also activates Caspases on colon cancer cells, making S. vesiculosa EMVs as natural nanocarriers for drug delivery.
NMR, capsule, Biofilm, nanoparticles, SANS, Shewanosamine
Structure type: polymer chemical repeating unit
Location inside paper: scheme 4, table 3, repeating unit of the CPS
Compound class: CPS
Contained glycoepitopes: IEDB_135813,IEDB_137340,IEDB_141807,IEDB_142488,IEDB_144998,IEDB_146664,IEDB_151531,IEDB_225177,IEDB_885823,IEDB_983931,SB_192
Methods: 1H NMR, NMR-2D, GC-MS, chemical analysis, ESI-MS, chemical synthesis, extraction, zeta potential measurement, RP-HPLC, biological assay, DLS, SANS, SLS, DOG-PAGE
Synthetic data: chemical
Comments, role: new amino sugar = 2,3,4-triacetamido-2,3,4,6-tetradeoxy-D-galactopyranose, named Shewanosamine (ShwN)
Related record ID(s): 8438, 20861
NCBI Taxonomy refs (TaxIDs): 518738
Show glycosyltransferases
NMR conditions: in D2O; pH 6 at 308 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
3,6,2 Ac 174.3 ?
3,6 bDGlcpN 100.6 55.3 73.3 77.4 74.0 60.6
3,4,4,2 Ac 173.9 ?
3,4,4,3 Am 166.0 ?
3,4,4,4 Ac 175.6 ?
3,4,4 aDSugp 95.4 46.7 50.6 49.7 65.0 15.6
3,4,2 Ac 173.9-174.1 ?
3,4,3 Ac 173.9-174.1 ?
3,4 aDGlcpN3NA 99.1 52.6 52.5 72.6 73.8 174.4
3 aDGlcp 93.9 70.8 72.6 79.1 68.8 66.8
2 Ac 173.4 ?
bLRhap 99.0 68.1 74.3 70.8 72.3 17.0
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
3,6,2 Ac - 2.03
3,6 bDGlcpN 4.39 3.75 3.62 3.71 3.44 3.79-3.91
3,4,4,2 Ac - 1.99
3,4,4,3 Am ? 2.14
3,4,4,4 Ac - 2.09
3,4,4 aDSugp 5.25 4.16 4.06 4.36 4.27 1.12
3,4,2 Ac - 1.91-1.97
3,4,3 Ac - 1.91-1.97
3,4 aDGlcpN3NA 4.97 4.07 4.25 3.95 4.22 -
3 aDGlcp 5.03 3.53 4.00 3.60 4.13 3.77-4.12
2 Ac - 2.18
bLRhap 5.08 5.69 3.88 3.52 3.53 1.38
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
3,6,2 Ac ?/2.03
3,6 bDGlcpN 100.6/4.39 55.3/3.75 73.3/3.62 77.4/3.71 74.0/3.44 60.6/3.79-3.91
3,4,4,2 Ac ?/1.99
3,4,4,3 Am 166.0/? ?/2.14
3,4,4,4 Ac ?/2.09
3,4,4 aDSugp 95.4/5.25 46.7/4.16 50.6/4.06 49.7/4.36 65.0/4.27 15.6/1.12
3,4,2 Ac ?/1.91-1.97
3,4,3 Ac ?/1.91-1.97
3,4 aDGlcpN3NA 99.1/4.97 52.6/4.07 52.5/4.25 72.6/3.95 73.8/4.22
3 aDGlcp 93.9/5.03 70.8/3.53 72.6/4.00 79.1/3.60 68.8/4.13 66.8/3.77-4.12
2 Ac ?/2.18
bLRhap 99.0/5.08 68.1/5.69 74.3/3.88 70.8/3.52 72.3/3.53 17.0/1.38
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
3,6,2 | Ac |
| 2.03 | |
3,6 | bDGlcpN | 4.39 | 3.75 | 3.62 | 3.71 | 3.44 | 3.79 3.91 |
3,4,4,2 | Ac |
| 1.99 | |
3,4,4,3 | Am | ? | 2.14 | |
3,4,4,4 | Ac |
| 2.09 | |
3,4,4 | aDSugp | 5.25 | 4.16 | 4.06 | 4.36 | 4.27 | 1.12 |
3,4,2 | Ac |
| 1.91 1.97 | |
3,4,3 | Ac |
| 1.91 1.97 | |
3,4 | aDGlcpN3NA | 4.97 | 4.07 | 4.25 | 3.95 | 4.22 |
|
3 | aDGlcp | 5.03 | 3.53 | 4.00 | 3.60 | 4.13 | 3.77 4.12 |
2 | Ac |
| 2.18 | |
| bLRhap | 5.08 | 5.69 | 3.88 | 3.52 | 3.53 | 1.38 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
3,6,2 | Ac | 174.3 | ? | |
3,6 | bDGlcpN | 100.6 | 55.3 | 73.3 | 77.4 | 74.0 | 60.6 |
3,4,4,2 | Ac | 173.9 | ? | |
3,4,4,3 | Am | 166.0 | ? | |
3,4,4,4 | Ac | 175.6 | ? | |
3,4,4 | aDSugp | 95.4 | 46.7 | 50.6 | 49.7 | 65.0 | 15.6 |
3,4,2 | Ac | 173.9 174.1 | ? | |
3,4,3 | Ac | 173.9 174.1 | ? | |
3,4 | aDGlcpN3NA | 99.1 | 52.6 | 52.5 | 72.6 | 73.8 | 174.4 |
3 | aDGlcp | 93.9 | 70.8 | 72.6 | 79.1 | 68.8 | 66.8 |
2 | Ac | 173.4 | ? | |
| bLRhap | 99.0 | 68.1 | 74.3 | 70.8 | 72.3 | 17.0 |
|
 The spectrum also has 7 signals at unknown positions (not plotted). |
There is only one chemically distinct structure:
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