Found 3 records.
Displayed records from 1 to 3
Expand all records
Collapse all records
Show all as text (SweetDB notation)
Show all graphically (SNFG notation)
Delbarre-Ladrat C, Sinquin C, Marchand L, Bonnetot S, Zykwinska A, Verrez-Bagnis V, Colliec-Jouault S
Influence of the Carbon and Nitrogen Sources on Diabolican Production by the Marine Vibrio diabolicus Strain CNCM I-1629
Polymers 14(10) (2022)
1994
-3)-b-D-GlcpNAc-(1-4)-b-D-GlcpA-(1-4)-b-D-GlcpA-(1-4)-a-D-GalpNAc-(1- |
Show graphically |
Vibrio diabolicus CNCM I-1629
(Ancestor NCBI TaxID 50719,
species name lookup)
Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
NCBI PubMed ID: 35631877Publication DOI: 10.3390/polym14101994Journal NLM ID: 101545357Publisher: Basel: MDPI
Correspondence: C. Delbarre-Ladrat <christine.delbarre.ladrat

ifremer.fr>
Institutions: Ifremer, MASAE, EM3B Laboratory, CEDEX 3, F-44300 Nantes, France
Recent advances in glycobiotechnology show that bacterial exopolysaccharides (EPS) presenting glycosaminoglycan (GAG)-like properties can provide a valuable source of bio-active macromolecules for industrial applications. The HE800 EPS, named diabolican, is a marine-derived anionic high-molecular-weight polysaccharide produced by Vibrio diabolicus CNCM I-1629 which displays original structural features close to those of hyaluronic acid. We investigated the impact of carbon and nitrogen substrates on both Vibrio diabolicus growth and diabolican production. Both substrates were screened by a one-factor-at-a-time method, and experimental designs were used to study the effect of glucose, mannitol, and ammonium acetate various concentrations. Results showed that the medium composition affected not only the bacterium growth and EPS yield, but also the EPS molecular weight (MW). EPS yields of 563 and 330 mg L-1 were obtained in the presence of 69.3 g L-1 glucose and 24.6 g L-1 mannitol, respectively, both for 116.6 mM ammonium acetate. MW was the highest, with 69.3 g L-1 glucose and 101.9 mM ammonium acetate (2.3 × 106 g mol-1). In parallel, the bacterial maximum specific growth rate was higher when both carbon and nitrogen substrate concentrations were low. This work paves the way for the optimization of marine exopolysaccharide production of great interest in the fields of human health and cosmetics.
exopolysaccharide, production, molecular weight, Marine bacterium, central composite design, Vibrio diabolicus, yield
Structure type: polymer chemical repeating unit ; 800000
Location inside paper: p. 1994-1
Trivial name: diabolican
Compound class: EPS, polysaccharide
Contained glycoepitopes: IEDB_115136,IEDB_130648,IEDB_135813,IEDB_137340,IEDB_137473,IEDB_1391961,IEDB_140630,IEDB_141584,IEDB_141807,IEDB_151531,IEDB_423153,IEDB_885822
Methods: composition analysis, HPLC, HPSEC, GC-FID, MALS, OD, selection medium, cultivation, EPS production, RI
NCBI Taxonomy refs (TaxIDs): 50719Reference(s) to other database(s): GTC:G62612LA
Show glycosyltransferases
There is only one chemically distinct structure:
Expand this record
Collapse this record
Wagh VV, Said MS, Bennale JS, Dastager SG
Isolation and structural characterization of exopolysaccharide from marine Bacillus sp. and its optimization by Microbioreactor
Carbohydrate Polymers 285 (2022)
119241
Bacillus sp. SGD-03
(NCBI TaxID 1402856,
species name lookup)
Taxonomic group: bacteria / Firmicutes
(Phylum: Firmicutes)
Associated disease: infection due to Bacillus [ICD11:
XN9ZE 
]
The structure was elucidated in this paperNCBI PubMed ID: 35287863Publication DOI: 10.1016/j.carbpol.2022.119241Journal NLM ID: 8307156Publisher: Elsevier
Correspondence: S.G. Dastager <sg.dastager

ncl.res.in>
Institutions: Academy of Scientific and Innovative Research (AcSIR), New Delhi, India, NCIM Resource Center, CSIR-National Chemical Laboratory, Pune 411008, India, Division of Organic Chemistry, CSIR-National Chemical Laboratory, Pune 411008, India, Beckman Coulter Life Sciences, Mumbai, India
In the present study, a cost-effective, robust Microbioreactor based production optimization of levan like exopolysaccharide from marine Bacillus sp. SGD-03 was analysed. FE-SEM analysis has showed the significant fibrillar structure of EPS. Size exclusion chromatography and other analytical data revealed that, produced EPS has a molecular weight of 1.0 × 104 Da and is composed of fructose monosaccharide with hydroxyl, carbonyl, and ether groups. The backbone structure of EPS has a branching pattern of β-(2,6) linkages which confirms the similarity with available levan like polymers. The cost-effective media composition for levan production was demonstrated. The maximum yield of crude levan obtained was 123.9 g/L by response surface methodology using robust BioLector Pro Microbioreactor, and same has been validated with shake flask, 1 L and 10 L pilot-scale fermentation.
structure, EPS, marine, optimization, microbioreactor
Structure type: fragment of a bigger structure ; 10000
Location inside paper: p. 119241-9, Fig. 8A, Fig. 8B
Trivial name: a levan type
Compound class: EPS
Contained glycoepitopes: IEDB_923066
Methods: 13C NMR, 1H NMR, NMR-2D, PCR, sugar analysis, TLC, FTIR, SEC-HPLC, SEM, DEPT, genome sequencing, UHPLC, FE-SEM, EPS production, data analysis, screening of EPS producing strain, LC-HRMS
Comments, role: NMR temperature was not specified
NCBI Taxonomy refs (TaxIDs): 1402856
Show glycosyltransferases
NMR conditions: in D2O
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
bDFruf 59.9 104.2 76.3 75.2 80.3 63.4
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
bDFruf 3.60-3.71 - 4.12 4.03 3.89 3.48-3.83
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
bDFruf 59.9/3.60-3.71 76.3/4.12 75.2/4.03 80.3/3.89 63.4/3.48-3.83
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
| bDFruf | 3.60 3.71 |
| 4.12 | 4.03 | 3.89 | 3.48 3.83 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
| bDFruf | 59.9 | 104.2 | 76.3 | 75.2 | 80.3 | 63.4 |
|
There is only one chemically distinct structure:
Expand this record
Collapse this record
Vanin AP, Visentin EZ, Fontana RC, di Medeiros Leal MCB, de Avila E Silva S, Stokke BT, Carbonero ER, Camassola M
β-(1→3)(1→6)glucan from Schizophyllum commune 227E.32: High yield production via glucose/xylose co-metabolization
Carbohydrate Polymers 320 (2023)
121176
b-D-Glcp-(1-6)-+
|
-3)-b-D-Glcp-(1-3)-b-D-Glcp-(1-3)-b-D-Glcp-(1- |
Show graphically |
Schizophyllum commune 227E.32
(Ancestor NCBI TaxID 5334,
species name lookup)
Taxonomic group: fungi / Basidiomycota
(Phylum: Basidiomycota)
Organ / tissue: mycelium
The structure was elucidated in this paperNCBI PubMed ID: 37659785Publication DOI: 10.1016/j.carbpol.2023.121176Journal NLM ID: 8307156Publisher: Elsevier
Correspondence: A.P. Vanin <apvanin

ucs.br>
Institutions: Enzymes and Biomass Laboratory, Institute of Biotechnology, University of Caxias do Sul, Caxias do Sul, RS, Brazil, Nuclear Magnetic Resonance Laboratory, Federal University of São Carlos, São Carlos, SP, Brazil, Computational Biology and Bioinformatics Laboratory, Bioinformatics Research Center, Institute of Biotechnology, University of Caxias do Sul, Caxias do Sul, RS, Brazil, Biophysics and Medical Technology, Department of Physics, NTNU Norwegian University of Science and Technology, Trondheim, Norway, Institute of Chemistry, Federal University of Catalao, Catalao, GO, Brazil
A co-metabolization of xylose and glucose by Schizophyllum commune 227E.32 wild mushroom for exopolysaccharide (EPS) production is presented. Cultivations performed with S. commune 227E.32 at different xylose concentrations demonstrated that the concentration of 50 g·L-1 of xylose achieved the highest EPS production, around 4.46 g·L-1. Scale-up in a stirred tank reactor (STR) was performed. 10 % inoculum showed the highest cost/benefit ratio regarding sugar conversion and EPS production (Y P/S = 0.90 g·g-1), achieving 1.82 g·L-1 of EPS. Isolation, purification, and characterization were conducted with EPS produced in flasks and STR. GC-MS analysis showed glucose as main monosaccharide constituents for both isolates. 13C NMR and HSQC-edited showed that both EPS isolated consisted of a β-D-Glcp (1→3) main chain, partially substituted at O-6 with nonreducing β-D-Glcp ends on every third residue, similar to β-D-glucan isolated from S. commune basidiomes known as schizophyllan (SPG). The Mw was determined by GPC to 1.5 × 106 Da (flasks) and 1.1 × 106 Da (STR). AFM topographs revealed a semi-flexible appearance of the β-D-glucan, consistent with the triple helical structures adopted by SPG and overall contour length consistent with a high molar mass.
physicochemical characterization, mushroom β-(1 → 3)(1 → 6)glucan, xylose/glucose co-metabolization
Structure type: polymer chemical repeating unit ; 1100000-1500000
Location inside paper: abstract, Fig. 6(c)
Trivial name: schizophyllan (SPG)
Compound class: EPS
Methods: 13C NMR, 1H NMR, methylation, GC-MS, GPC, UV, viscosity measurement, AFM, isolation, EPS production, cultivations
Comments, role: published polymerization frame was shifted for conformity with other records
NCBI Taxonomy refs (TaxIDs): 5334
Show glycosyltransferases
There is only one chemically distinct structure:
Expand this record
Collapse this record
Total list of record IDs on all result pages of the current query:
Execution: 8 sec