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Kokoulin MS, Kuzmich AS, Romanenko LA, Chikalovets IV
Sulfated capsular polysaccharide from the marine bacterium Kangiella japonica inhibits T-47D cells growth in vitro
Carbohydrate Polymers 290 (2022)
119477
S-4)-+
|
-3)-a-D-GlcpNAc-(1-4)-b-D-ManpNA3Ac-(1-4)-b-D-GlcpNAc-(1-
|
S-6)-+ |
Show graphically |
Kangiella japonica KMM 3897
(Ancestor NCBI TaxID 647384,
species name lookup)
Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
The structure was elucidated in this paperNCBI PubMed ID: 35550752Publication DOI: 10.1016/j.carbpol.2022.119477Journal NLM ID: 8307156Publisher: Elsevier
Correspondence: M.S. Kokoulin <maxchem

mail.ru>
Institutions: G.B. Elyakov Pacific Institute of Bioorganic Chemistry, Far Eastern Branch, Russian Academy of Sciences, 159/2, Prospect 100 let Vladivostoku, Vladivostok 690022, Russia
Kangiella japonica KMM 3897 is a Gram-negative bacterium isolated from a coastal sea-water sample of the Sea of Japan. In this paper, the results about the structure and the antiproliferative effect on cancer cells of the capsular polysaccharide isolated from the Kangiella japonica KMM 3897 have been described. The carbohydrate polymer was isolated and purified by several separation techniques, and the structure was elucidated using chemical analysis and NMR spectroscopy. The following structure of the sulfated capsular polysaccharide, containing 2-amino-2-deoxy-D-mannuronic acid was established: The capsular polysaccharide exerted a selective antiproliferative effect and suppressed the colony formation of T-47D cells.
structure, capsular polysaccharide, Marine bacteria, sulfate, Antiproliferative activity, breast cancer, Kangiella japonica, T-47D
Structure type: polymer chemical repeating unit
Location inside paper: abstract, table 1, Fig. 4, CPS
Compound class: CPS
Contained glycoepitopes: IEDB_135813,IEDB_137340,IEDB_141807,IEDB_142354,IEDB_151531,IEDB_241120
Methods: 13C NMR, 1H NMR, NMR-2D, GC-MS, SDS-PAGE, sugar analysis, de-O-acetylation, FTIR, methanolysis, HPLC, HPSEC, statistical analysis, N-acetylation, dialysis, cell viability assay, TEM, soft agar assay, O-desulfation
Related record ID(s): 21024, 21025
NCBI Taxonomy refs (TaxIDs): 647384
Show glycosyltransferases
NMR conditions: in D2O at 310 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
4,4,2 Ac 174.4-175.6 23.2-23.5
4,4,4 S
4,4,6 S
4,4 aDGlcpN 97.3 53.9 76.5 75.3 69.7 67.6
4,3 Ac 174.3 21.9
4 bDManpNA 100.2 55.4 77.0 71.8 77.2 175.1
2 Ac 174.4-175.6 23.2-23.5
bDGlcpN 102.3 56.7 73.0 80.1 74.8 61.4
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
4,4,2 Ac - 1.97-2.02
4,4,4 S
4,4,6 S
4,4 aDGlcpN 5.21 4.02 4.01 4.28 4.04 4.29-4.33
4,3 Ac - 2.07
4 bDManpNA 4.96 3.99 5.01 4.14 3.91 -
2 Ac - 1.97-2.02
bDGlcpN 4.52 3.63 3.80 3.74 3.43 3.75-3.91
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
4,4,2 Ac 23.2-23.5/1.97-2.02
4,4,4 S
4,4,6 S
4,4 aDGlcpN 97.3/5.21 53.9/4.02 76.5/4.01 75.3/4.28 69.7/4.04 67.6/4.29-4.33
4,3 Ac 21.9/2.07
4 bDManpNA 100.2/4.96 55.4/3.99 77.0/5.01 71.8/4.14 77.2/3.91
2 Ac 23.2-23.5/1.97-2.02
bDGlcpN 102.3/4.52 56.7/3.63 73.0/3.80 80.1/3.74 74.8/3.43 61.4/3.75-3.91
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
4,4,2 | Ac |
| 1.97 2.02 | |
4,4,4 | S | |
4,4,6 | S | |
4,4 | aDGlcpN | 5.21 | 4.02 | 4.01 | 4.28 | 4.04 | 4.29 4.33 |
4,3 | Ac |
| 2.07 | |
4 | bDManpNA | 4.96 | 3.99 | 5.01 | 4.14 | 3.91 |
|
2 | Ac |
| 1.97 2.02 | |
| bDGlcpN | 4.52 | 3.63 | 3.80 | 3.74 | 3.43 | 3.75 3.91 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
4,4,2 | Ac | 174.4 175.6 | 23.2 23.5 | |
4,4,4 | S | |
4,4,6 | S | |
4,4 | aDGlcpN | 97.3 | 53.9 | 76.5 | 75.3 | 69.7 | 67.6 |
4,3 | Ac | 174.3 | 21.9 | |
4 | bDManpNA | 100.2 | 55.4 | 77.0 | 71.8 | 77.2 | 175.1 |
2 | Ac | 174.4 175.6 | 23.2 23.5 | |
| bDGlcpN | 102.3 | 56.7 | 73.0 | 80.1 | 74.8 | 61.4 |
|
There is only one chemically distinct structure:
Expand this record
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Kokoulin MS, Kuzmich AS, Romanenko LA, Chikalovets IV
Sulfated capsular polysaccharide from the marine bacterium Kangiella japonica inhibits T-47D cells growth in vitro
Carbohydrate Polymers 290 (2022)
119477
S-4)-+
|
-3)-a-D-GlcpNAc-(1-4)-b-D-ManpNA-(1-4)-b-D-GlcpNAc-(1-
|
S-6)-+ |
Show graphically |
Kangiella japonica KMM 3897
(Ancestor NCBI TaxID 647384,
species name lookup)
Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
The structure was elucidated in this paperNCBI PubMed ID: 35550752Publication DOI: 10.1016/j.carbpol.2022.119477Journal NLM ID: 8307156Publisher: Elsevier
Correspondence: M.S. Kokoulin <maxchem

mail.ru>
Institutions: G.B. Elyakov Pacific Institute of Bioorganic Chemistry, Far Eastern Branch, Russian Academy of Sciences, 159/2, Prospect 100 let Vladivostoku, Vladivostok 690022, Russia
Kangiella japonica KMM 3897 is a Gram-negative bacterium isolated from a coastal sea-water sample of the Sea of Japan. In this paper, the results about the structure and the antiproliferative effect on cancer cells of the capsular polysaccharide isolated from the Kangiella japonica KMM 3897 have been described. The carbohydrate polymer was isolated and purified by several separation techniques, and the structure was elucidated using chemical analysis and NMR spectroscopy. The following structure of the sulfated capsular polysaccharide, containing 2-amino-2-deoxy-D-mannuronic acid was established: The capsular polysaccharide exerted a selective antiproliferative effect and suppressed the colony formation of T-47D cells.
structure, capsular polysaccharide, Marine bacteria, sulfate, Antiproliferative activity, breast cancer, Kangiella japonica, T-47D
Structure type: polymer chemical repeating unit
Location inside paper: table 2, Fig. 4, CPS-2
Compound class: CPS
Contained glycoepitopes: IEDB_135813,IEDB_137340,IEDB_141807,IEDB_142354,IEDB_151531,IEDB_241120
Methods: 13C NMR, 1H NMR, NMR-2D, GC-MS, SDS-PAGE, sugar analysis, de-O-acetylation, FTIR, methanolysis, HPLC, HPSEC, statistical analysis, N-acetylation, dialysis, cell viability assay, TEM, soft agar assay, O-desulfation
Comments, role: O-deacetylated CPS
Related record ID(s): 8489, 21025
NCBI Taxonomy refs (TaxIDs): 647384
Show glycosyltransferases
NMR conditions: in D2O at 310 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
4,4,2 Ac 175.2-175.7 23.4-23.6
4,4,4 S
4,4,6 S
4,4 aDGlcpN 96.6 54.1 76.7 75.8 69.8 68.2
4 bDManpNA 101.3 57.0 73.3 73.3 75.4 173.5
2 Ac 175.2-175.7 23.4-23.6
bDGlcpN 102.4 56.5 73.3 80.7 74.9 61.6
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
4,4,2 Ac - 2.00-2.11
4,4,4 S
4,4,6 S
4,4 aDGlcpN 5.33 4.04 4.03 4.25 4.04 4.25-4.37
4 bDManpNA 4.91 3.79 3.97 3.84 3.94 -
2 Ac - 2.00-2.11
bDGlcpN 4.55 3.66 3.85 3.66 3.46 3.80-3.94
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
4,4,2 Ac 23.4-23.6/2.00-2.11
4,4,4 S
4,4,6 S
4,4 aDGlcpN 96.6/5.33 54.1/4.04 76.7/4.03 75.8/4.25 69.8/4.04 68.2/4.25-4.37
4 bDManpNA 101.3/4.91 57.0/3.79 73.3/3.97 73.3/3.84 75.4/3.94
2 Ac 23.4-23.6/2.00-2.11
bDGlcpN 102.4/4.55 56.5/3.66 73.3/3.85 80.7/3.66 74.9/3.46 61.6/3.80-3.94
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
4,4,2 | Ac |
| 2.00 2.11 | |
4,4,4 | S | |
4,4,6 | S | |
4,4 | aDGlcpN | 5.33 | 4.04 | 4.03 | 4.25 | 4.04 | 4.25 4.37 |
4 | bDManpNA | 4.91 | 3.79 | 3.97 | 3.84 | 3.94 |
|
2 | Ac |
| 2.00 2.11 | |
| bDGlcpN | 4.55 | 3.66 | 3.85 | 3.66 | 3.46 | 3.80 3.94 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
4,4,2 | Ac | 175.2 175.7 | 23.4 23.6 | |
4,4,4 | S | |
4,4,6 | S | |
4,4 | aDGlcpN | 96.6 | 54.1 | 76.7 | 75.8 | 69.8 | 68.2 |
4 | bDManpNA | 101.3 | 57.0 | 73.3 | 73.3 | 75.4 | 173.5 |
2 | Ac | 175.2 175.7 | 23.4 23.6 | |
| bDGlcpN | 102.4 | 56.5 | 73.3 | 80.7 | 74.9 | 61.6 |
|
There is only one chemically distinct structure:
Expand this record
Collapse this record
Kokoulin MS, Kuzmich AS, Romanenko LA, Chikalovets IV
Sulfated capsular polysaccharide from the marine bacterium Kangiella japonica inhibits T-47D cells growth in vitro
Carbohydrate Polymers 290 (2022)
119477
Kangiella japonica KMM 3897
(Ancestor NCBI TaxID 647384,
species name lookup)
Taxonomic group: bacteria / Proteobacteria
(Phylum: Proteobacteria)
The structure was elucidated in this paperNCBI PubMed ID: 35550752Publication DOI: 10.1016/j.carbpol.2022.119477Journal NLM ID: 8307156Publisher: Elsevier
Correspondence: M.S. Kokoulin <maxchem

mail.ru>
Institutions: G.B. Elyakov Pacific Institute of Bioorganic Chemistry, Far Eastern Branch, Russian Academy of Sciences, 159/2, Prospect 100 let Vladivostoku, Vladivostok 690022, Russia
Kangiella japonica KMM 3897 is a Gram-negative bacterium isolated from a coastal sea-water sample of the Sea of Japan. In this paper, the results about the structure and the antiproliferative effect on cancer cells of the capsular polysaccharide isolated from the Kangiella japonica KMM 3897 have been described. The carbohydrate polymer was isolated and purified by several separation techniques, and the structure was elucidated using chemical analysis and NMR spectroscopy. The following structure of the sulfated capsular polysaccharide, containing 2-amino-2-deoxy-D-mannuronic acid was established: The capsular polysaccharide exerted a selective antiproliferative effect and suppressed the colony formation of T-47D cells.
structure, capsular polysaccharide, Marine bacteria, sulfate, Antiproliferative activity, breast cancer, Kangiella japonica, T-47D
Structure type: polymer chemical repeating unit
Location inside paper: table 2, Fig. 4, CPS-3
Compound class: CPS
Contained glycoepitopes: IEDB_135813,IEDB_137340,IEDB_141807,IEDB_151531
Methods: 13C NMR, 1H NMR, NMR-2D, GC-MS, SDS-PAGE, sugar analysis, de-O-acetylation, FTIR, methanolysis, HPLC, HPSEC, statistical analysis, N-acetylation, dialysis, cell viability assay, TEM, soft agar assay, O-desulfation
Comments, role: O-deacetylated and O-desulfated CPS
Related record ID(s): 8489, 21024
NCBI Taxonomy refs (TaxIDs): 647384
Show glycosyltransferases
NMR conditions: in D2O at 310 K
[as TSV]
13C NMR data:
Linkage Residue C1 C2 C3 C4 C5 C6
4,4,2 Ac 174.9-175.6 23.2-23.5
4,4 aDGlcpN 98.6 53.8 79.6 69.1 72.8 61.3
4 bDManpNA 100.4 54.6 73.6 74.8 76.9 176.6
2 Ac 174.9-175.6 23.2-23.5
bDGlcpN 102.3 56.7 73.0 80.0 75.5 61.3
1H NMR data:
Linkage Residue H1 H2 H3 H4 H5 H6
4,4,2 Ac - 1.98-2.08
4,4 aDGlcpN 5.24 3.96 3.83 3.55 3.74 3.79-3.85
4 bDManpNA 4.93 4.50 4.05 3.85 3.94 -
2 Ac - 1.98-2.08
bDGlcpN 4.54 3.67 3.67 3.69 3.50 3.75-3.89
1H/13C HSQC data:
Linkage Residue C1/H1 C2/H2 C3/H3 C4/H4 C5/H5 C6/H6
4,4,2 Ac 23.2-23.5/1.98-2.08
4,4 aDGlcpN 98.6/5.24 53.8/3.96 79.6/3.83 69.1/3.55 72.8/3.74 61.3/3.79-3.85
4 bDManpNA 100.4/4.93 54.6/4.50 73.6/4.05 74.8/3.85 76.9/3.94
2 Ac 23.2-23.5/1.98-2.08
bDGlcpN 102.3/4.54 56.7/3.67 73.0/3.67 80.0/3.69 75.5/3.50 61.3/3.75-3.89
1H NMR data:
Linkage | Residue | H1 | H2 | H3 | H4 | H5 | H6 |
4,4,2 | Ac |
| 1.98 2.08 | |
4,4 | aDGlcpN | 5.24 | 3.96 | 3.83 | 3.55 | 3.74 | 3.79 3.85 |
4 | bDManpNA | 4.93 | 4.50 | 4.05 | 3.85 | 3.94 |
|
2 | Ac |
| 1.98 2.08 | |
| bDGlcpN | 4.54 | 3.67 | 3.67 | 3.69 | 3.50 | 3.75 3.89 |
|
13C NMR data:
Linkage | Residue | C1 | C2 | C3 | C4 | C5 | C6 |
4,4,2 | Ac | 174.9 175.6 | 23.2 23.5 | |
4,4 | aDGlcpN | 98.6 | 53.8 | 79.6 | 69.1 | 72.8 | 61.3 |
4 | bDManpNA | 100.4 | 54.6 | 73.6 | 74.8 | 76.9 | 176.6 |
2 | Ac | 174.9 175.6 | 23.2 23.5 | |
| bDGlcpN | 102.3 | 56.7 | 73.0 | 80.0 | 75.5 | 61.3 |
|
There is only one chemically distinct structure:
Expand this record
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